CX070279

Overview
NameCX070279
Unique NameCX070279
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length832
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4637 contig Csv1_Contig4637:319..1150. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX070279 vs. ExPASy Swiss-Prot
Match: GLGB_ASHGO (1,4-alpha-glucan-branching enzyme OS=Ashbya gossypii GN=GLC3 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.564e-20
Identity = 56/136 (41.18%), Postives = 81/136 (59.56%), Query Frame = -3
Query:  429 FSLANRHWDLLANRL--HSNLYSFDQELMKLDENAKVLLRGSPSVHHVNDAKMVICYMRGPLVFIFNFHPTDSYEDYSVGVEEAGEYQIILNTDESKFGGQGLIKEHQYLQRTISKRVDGLRNCIEVPLPSRTAQV 830
            +  A R ++L+ + L  + +LY+FD+ + + +   K L      V   ++   VI + R  LVFIFNFHPT S+ DY +GV+EAG Y+IILN+D  +FGG   I+E   +  T     +G RN I+V LPSRTA V
Sbjct:  563 YQYARRQFNLVDDGLLRYKHLYAFDKAMQEAEGKHKWLNTPQAYVSLKHETDKVISFERNGLVFIFNFHPTQSFTDYRIGVDEAGAYRIILNSDREEFGGHRRIEEENSVFHTTDLEWNGRRNFIQVYLPSRTALV 698          
BLAST of CX070279 vs. ExPASy Swiss-Prot
Match: GLGB_DEBHA (1,4-alpha-glucan-branching enzyme OS=Debaryomyces hansenii GN=GLC3 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.240e-17
Identity = 56/145 (38.62%), Postives = 83/145 (57.24%), Query Frame = -3
Query:  420 FSLANRHWDLLANRL--HSNLYSFDQELMKLDENAKVLLRGSPSVHHVNDAKMVICYMRGPLVFIFNFHPTDSYEDYSVGVEEAGEYQIILNTDESKFGGQGLIKE-----HQYLQ-RTISKRVDGLRNCIEVPLPSRTAQVYKL 830
            ++ A R ++L+ + L  +  L++FD  +  LD    +LL     V   N+   VI + R  L+FIFNFHPT+SY DY +GVE  G YQI+LN+D   FGG G I+E      + LQ  T ++R +   N +   +PSRTA V ++
Sbjct:  562 YAYARRQFNLIEDDLLRYKFLFAFDGAMQHLDTKYGILLSSQAYVSLKNENDKVIVFERNGLLFIFNFHPTNSYADYKIGVETPGVYQIVLNSDSLSFGGHGRIEETNKETGEKLQFFTNNERWNDRSNALFCYIPSRTAIVLQV 706          
BLAST of CX070279 vs. ExPASy Swiss-Prot
Match: GLGB_KLULA (1,4-alpha-glucan-branching enzyme OS=Kluyveromyces lactis GN=GLC3 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.114e-17
Identity = 52/144 (36.11%), Postives = 81/144 (56.25%), Query Frame = -3
Query:  405 FSLANRHWDLLANRL--HSNLYSFDQELMKLDENAKVLLRGSPSVHHVNDAKMVICYMRGPLVFIFNFHPTDSYEDYSVGVEEAGEYQIILNTDESKFGGQGLIKEHQYLQRTISKRVDGLRNCIEVPLPSRTAQVYKLSRILR 830
            +  A R ++L+ + L  +  LY FD+ +   ++N K L      V   ++   VI + R  L+FIFNFHPT+S+ DY +GV E G Y+I+LN+D+ ++GG   I E Q    T   + +   N I+V +P+RTA V  L   +R
Sbjct:  573 YHYARRQFNLVDDPLLRYQYLYQFDKAMQTTEKNYKWLNTPQAYVSLKHEVDKVIAFERNGLLFIFNFHPTESFTDYRIGVNEPGCYRIVLNSDKHEYGGWDRIDESQSKYFTTDLKWNERNNFIQVYIPNRTALVLALDSRVR 716          
BLAST of CX070279 vs. ExPASy Swiss-Prot
Match: GLGB_YEAST (1,4-alpha-glucan-branching enzyme OS=Saccharomyces cerevisiae GN=GLC3 PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 2.338e-16
Identity = 51/139 (36.69%), Postives = 76/139 (54.68%), Query Frame = -3
Query:  420 FSLANRHWDLLANRL--HSNLYSFDQELMKLDENAKVLLRGSPSVHHVNDAKMVICYMRGPLVFIFNFHPTDSYEDYSVGVEEAGEYQIILNTDESKFGGQGLIKEHQYLQRTISKRVDGLRNCIEVPLPSRTAQVYKL 830
            +  A R ++L  + L  + NL  FD+ +   ++  K L      V   ++   +I + R  L+FIFNFHPT+SY DY VGVE+AG Y I+LN+D ++FGG   I E      T     +  +N ++V +PSR A V  L
Sbjct:  565 YKYARRQFNLADDPLLRYQNLNEFDRSMQLCEKRHKWLNTKQAYVSLKHEGDKMIVFERNNLLFIFNFHPTNSYSDYRVGVEKAGTYHIVLNSDRAEFGGHNRINESSEF-FTTDLEWNNRKNFLQVYIPSRVALVLAL 702          
BLAST of CX070279 vs. ExPASy Swiss-Prot
Match: GLGB_CRYNE (1,4-alpha-glucan-branching enzyme OS=Cryptococcus neoformans GN=GLC3 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.208e-16
Identity = 53/140 (37.86%), Postives = 80/140 (57.14%), Query Frame = -3
Query:  420 FSLANRHWDLLANRL--HSNLYSFDQELMKLDENAKVLLRGSPSVHHVNDAKMVICYMRGPLVFIFNFHPTDSYEDYSVGVEEAGEYQIILNTDESKFGGQGLI-KEHQYLQRTISKRVDGLRNCIEVPLPSRTAQVYKL 830
            F+ A R ++L+ ++L  +  LY FD  +  L++  K L      V   ++   +I + R  L+FIFNFHPT S+ DY VGV+ AGEY++IL +DE++FGG   I    +Y   T     +G +N ++V  PSRT  V  L
Sbjct:  545 FAHARRQFNLVDDKLLRYKYLYEFDVAMNWLEDKYKWLNSPQAYVSLKHEGDKMIVFERAGLLFIFNFHPTQSFTDYRVGVDTAGEYKVILTSDETRFGGHNRIDMGGRYF--TTPMEWNGRKNWLQVYSPSRTVLVLGL 682          
BLAST of CX070279 vs. ExPASy Swiss-Prot
Match: GLGB_YARLI (1,4-alpha-glucan-branching enzyme OS=Yarrowia lipolytica GN=GLC3 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.515e-15
Identity = 44/137 (32.12%), Postives = 71/137 (51.82%), Query Frame = -3
Query:  426 FSLANRHWDLLANRL--HSNLYSFDQELMKLDENAKVLLRGSPSVHHVNDAKMVICYMRGPLVFIFNFHPTDSYEDYSVGVEEAGEYQIILNTDESKFGGQGLIKEHQYLQRTISKRVDGLRNCIEVPLPSRTAQVY 830
            F    R W ++ ++L  + +L  FD  +    ++   L      V   N+   V+ Y R  LVF+FNFHP  S+ DY +GV++ G Y ++L++D  +FGG G I   +    T     +G  NC+ + +PSR A V+
Sbjct:  546 FHYCRRQWPVVDDKLLRYQHLNEFDAAMQHRGDHYGWLSADQAYVSLKNEDDKVVVYERAGLVFVFNFHPNKSFTDYRIGVDQPGTYTLVLDSDSPEFGGFGRIDHEKTRCHTEPLEWNGRANCMHIYIPSRVALVF 682          
BLAST of CX070279 vs. ExPASy Swiss-Prot
Match: GLGB_CANGA (1,4-alpha-glucan-branching enzyme OS=Candida glabrata GN=GLC3 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.520e-15
Identity = 49/136 (36.03%), Postives = 74/136 (54.41%), Query Frame = -3
Query:  429 FSLANRHWDLLANRL--HSNLYSFDQELMKLDENAKVLLRGSPSVHHVNDAKMVICYMRGPLVFIFNFHPTDSYEDYSVGVEEAGEYQIILNTDESKFGGQGLIKEHQYLQRTISKRVDGLRNCIEVPLPSRTAQV 830
            +  A R ++L+ + L  + +L  FD  +   +   + L      V   ++   VI + R   +F+FNFHPT S+ DY +GV+ AG Y+I+LNTD ++FGG   I E Q    T     +  RN I+V +PSRTA V
Sbjct:  567 YHYARRQFNLVDDDLLRYRHLNEFDAAMQNCESKHQWLNTPQAYVSLKHEVDKVIAFERNGHLFVFNFHPTQSFTDYRIGVDVAGTYKIVLNTDRAEFGGHNRIDEAQEF-FTTDLEWNNRRNFIQVYIPSRTAIV 701          
BLAST of CX070279 vs. ExPASy Swiss-Prot
Match: GLGB_ASPOR (1,4-alpha-glucan-branching enzyme OS=Aspergillus oryzae GN=gbeA PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.675e-14
Identity = 51/144 (35.42%), Postives = 79/144 (54.86%), Query Frame = -3
Query:  408 FSLANRHWDLLANRL--HSNLYSFDQELMKLDENAKVLLRGSPSVHHVNDAKMVICYMRGPLVFIFNFHPTDSYEDYSVGVEEAGEYQIILNTDESKFGGQGL-IKEHQYLQRTISKRVDGLRNCIEVPLPSRTAQVYKLSRIL 830
            F  A R  +L  + L  +  L  FD+ +   +E    L      V   N+   V+ + R  L++IFNFHPT+S+ DY VGVE++G Y+I+L+TD+  FGG    +KE ++    +S   +G  N ++V +P+RTA V  L   L
Sbjct:  548 FWYARRQLNLTEDHLLRYKFLNDFDRAMQLTEEKYGWLHSPQAYVSLKNETDKVLVFERAGLLWIFNFHPTNSFTDYRVGVEQSGTYRIVLDTDDPAFGGLNRNLKETRFFTTDLS--WNGRSNFLQVYIPTRTALVLALEETL 689          
BLAST of CX070279 vs. ExPASy Swiss-Prot
Match: GLGB_EMENI (1,4-alpha-glucan-branching enzyme OS=Emericella nidulans GN=be1 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 3.732e-14
Identity = 48/143 (33.57%), Postives = 75/143 (52.45%), Query Frame = -3
Query:  408 FSLANRHWDLLANRL--HSNLYSFDQELMKLDENAKVLLRGSPSVHHVNDAKMVICYMRGPLVFIFNFHPTDSYEDYSVGVEEAGEYQIILNTDESKFGGQGLIKEHQYLQRTISKRVDGLRNCIEVPLPSRTAQVYKLSRIL 830
            F  A R  +L  + L  +  L  FD+ +   +     L      +   ++   V+ + R  L++IFNFHPT+S+ DY VGVE+AG Y+++L+TD+  FGG G I +      T     +G RN ++V +P+RTA    L   L
Sbjct:  545 FWYARRQLNLTEDHLLRYRFLNEFDRAMQLTESKYGWLHAPQAYISLKHEGDKVLVFERADLLWIFNFHPTESFTDYRVGVEQAGTYRVVLDTDDQAFGGLGRIDQGTRF-FTTDMEWNGRRNYLQVYIPTRTALALALEETL 686          
BLAST of CX070279 vs. ExPASy Swiss-Prot
Match: GLGB_GLOIN (1,4-alpha-glucan-branching enzyme OS=Glomus intraradices GN=GLC3 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.314e-14
Identity = 47/136 (34.56%), Postives = 70/136 (51.47%), Query Frame = -3
Query:  429 FSLANRHWDLLANRL--HSNLYSFDQELMKLDENAKVLLRGSPSVHHVNDAKMVICYMRGPLVFIFNFHPTDSYEDYSVGVEEAGEYQIILNTDESKFGGQGLIKEHQYLQRTISKRVDGLRNCIEVPLPSRTAQV 830
            F  A R W+++ + L  +  L  FD+ +  L+E    L      +   ++   ++ + RG L++IFNF PT S+ DY +G E AG+Y I LNTD   FGG   I E      +     DG +N I+V +P R A V
Sbjct:  545 FHYARRQWNVVDDDLLRYKYLNEFDKAMQHLEEQYGWLSSPQAYISLKHNENKLVAFERGNLLWIFNFLPTQSFADYKIGTEWAGKYSIALNTDRKIFGGHDRIDE-SISYHSQPHEWDGRKNYIQVYIPCRVAPV 679          
The following BLAST results are available for this feature:
BLAST of CX070279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
GLGB_ASHGO1.564e-2041.181,4-alpha-glucan-branching enzyme OS=Ashbya gossyp... [more]
GLGB_DEBHA1.240e-1738.621,4-alpha-glucan-branching enzyme OS=Debaryomyces ... [more]
GLGB_KLULA2.114e-1736.111,4-alpha-glucan-branching enzyme OS=Kluyveromyces... [more]
GLGB_YEAST2.338e-1636.691,4-alpha-glucan-branching enzyme OS=Saccharomyces... [more]
GLGB_CRYNE5.208e-1637.861,4-alpha-glucan-branching enzyme OS=Cryptococcus ... [more]
GLGB_YARLI1.515e-1532.121,4-alpha-glucan-branching enzyme OS=Yarrowia lipo... [more]
GLGB_CANGA7.520e-1536.031,4-alpha-glucan-branching enzyme OS=Candida glabr... [more]
GLGB_ASPOR1.675e-1435.421,4-alpha-glucan-branching enzyme OS=Aspergillus o... [more]
GLGB_EMENI3.732e-1433.571,4-alpha-glucan-branching enzyme OS=Emericella ni... [more]
GLGB_GLOIN8.314e-1434.561,4-alpha-glucan-branching enzyme OS=Glomus intrar... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_15H02_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-15H02-P3-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070279 ID=CX070279; Name=CX070279; organism=Citrus sinensis; type=EST; length=832bp
TTTTTTTTTTTTTTTTTACTAAATCAATATTTTTTATTTTTTTACGAATT
CACGAATTTTTGAGAATTTACAGAAGTGAATCCATATCTAATCCACCAAC
TACGGATTTTCAAATTTTCAATCAAATCCAATCCATCAATTTACAGATCG
AATTTTTACGAATCAAATTTCTACAGATTGAGCGGATCAGATTGGATTCT
GAACACCCATACCAGCTAGTGTAGCAAAATATCGGTGGACAAATGCATTT
CTTTCTCTTCACAAGCTGATTGGGGTTCTGAAGTACAGAACATCTCTCCA
TCAATGAGAAAATTTCTCATTTGAGTGACTTAACAAAGATGTAATTAGTC
TTCTCGTTCTCGAATTTCTGCAAGTATCTGTTCGGAATGCAAAATGACTT
AGATTCTTAAGATCCGGCTCAGTTTATAAACCTGGGCAGTCCTACTAGGT
AGAGGCACCTCTATGCAGTTTCGCAAACCATCAACTCTTTTGCTGATGGT
CCTTTGAAGATATTGGTGCTCCTTAATAAGTCCTTGACCTCCAAACTTAC
TTTCATCAGTATTTAGTATTATTTGATACTCTCCAGCTTCTTCCACGCCC
ACAGAGTAGTCTTCATAAGAATCTGTTGGATGAAAGTTGAATATGAAGAC
AAGAGGACCTCTCATATAACATATTACCATCTTGGCATCATTCACATGGT
GAACGCTAGGCGAACCTCTCAGAAGCACCTTTGCATTTTCATCCAACTTC
ATCAGTTCCTGATCAAAGGAATATAAGTTGGAATGTAGTCTGTTGGCTAG
CAAATCCCAGTGACGATTGGCAAGAGAAAATG
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