CX070278

Overview
NameCX070278
Unique NameCX070278
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length761
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX070278_ssr28 microsatellite CX070278_ssr28:28..53. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4344 contig Csv1_Contig4344:1..763. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX070278 vs. ExPASy Swiss-Prot
Match: SDLCA_SOYBN (Dynamin-related protein 12A OS=Glycine max PE=1 SV=1)

HSP 1 Score: 320.857 bits (821), Expect = 4.889e-87
Identity = 162/182 (89.01%), Postives = 168/182 (92.31%), Query Frame = 3
Query:  216 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISP 761
            MENLISLVNKIQRACTALGDHGE SALPTLWDSLPAIA            LES+VGKDFLPRGSGIVTRRPLVLQLHK++EGSREYAEFLH+PRKRFTDF AVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIV+DIE+MVRSYIEKPNCIILAISP
Sbjct:    1 MENLISLVNKIQRACTALGDHGENSALPTLWDSLPAIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIDEGSREYAEFLHLPRKRFTDFVAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVKDIEDMVRSYIEKPNCIILAISP 182          
BLAST of CX070278 vs. ExPASy Swiss-Prot
Match: SDL5A_SOYBN (Dynamin-related protein 5A OS=Glycine max PE=2 SV=1)

HSP 1 Score: 320.472 bits (820), Expect = 6.385e-87
Identity = 161/182 (88.46%), Postives = 168/182 (92.31%), Query Frame = 3
Query:  216 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISP 761
            MENLISLVNKIQRACTALGDHGE SALPTLWDSLPAIA            LES+VGKDFLPRGSGIVTRRPLVLQLHK+EEGSREYAEFLH+PRKRFTDF AVRKEIQDETDRETGRTKQIS+VPIHLSIYSPNVVNLTL+DLPGLTKVAVEGQPDSIV+DIE+MVRSYIEKPNCIILAISP
Sbjct:    1 MENLISLVNKIQRACTALGDHGENSALPTLWDSLPAIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIEEGSREYAEFLHLPRKRFTDFVAVRKEIQDETDRETGRTKQISTVPIHLSIYSPNVVNLTLVDLPGLTKVAVEGQPDSIVKDIEDMVRSYIEKPNCIILAISP 182          
BLAST of CX070278 vs. ExPASy Swiss-Prot
Match: DRP1A_ARATH (Dynamin-related protein 1A OS=Arabidopsis thaliana GN=DRP1A PE=1 SV=3)

HSP 1 Score: 310.071 bits (793), Expect = 8.630e-84
Identity = 156/182 (85.71%), Postives = 167/182 (91.76%), Query Frame = 3
Query:  216 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISP 761
            MENLISLVNKIQRACTALGDHG++SALPTLWDSLPAIA            LESIVGKDFLPRGSGIVTRRPLVLQL K+++G+REYAEFLH+PRK+FTDFAAVRKEIQDETDRETGR+K ISSVPIHLSIYSPNVVNLTLIDLPGLTKVAV+GQ DSIV+DIENMVRSYIEKPNCIILAISP
Sbjct:    1 MENLISLVNKIQRACTALGDHGDSSALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISP 182          
BLAST of CX070278 vs. ExPASy Swiss-Prot
Match: DRP1B_ARATH (Dynamin-related protein 1B OS=Arabidopsis thaliana GN=DRP1B PE=2 SV=1)

HSP 1 Score: 290.041 bits (741), Expect = 9.242e-78
Identity = 145/183 (79.23%), Postives = 166/183 (90.71%), Query Frame = 3
Query:  216 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGR-TKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISP 761
            ME+LI+LVNKIQRACTALGDHGE S+LPTLWDSLPAIA            LES+VGKDFLPRG+GIVTRRPLVLQLH+++EG +EYAEF+H+P+K+FTDFAAVR+EI DETDRETGR +K IS+VPIHLSI+SPNVVNLTL+DLPGLTKVAV+GQP+SIVQDIENMVRS+IEKPNCIILAISP
Sbjct:    1 MESLIALVNKIQRACTALGDHGEGSSLPTLWDSLPAIAVVGGQSSGKSSVLESVVGKDFLPRGAGIVTRRPLVLQLHRIDEG-KEYAEFMHLPKKKFTDFAAVRQEISDETDRETGRSSKVISTVPIHLSIFSPNVVNLTLVDLPGLTKVAVDGQPESIVQDIENMVRSFIEKPNCIILAISP 182          
BLAST of CX070278 vs. ExPASy Swiss-Prot
Match: DRP1C_ARATH (Dynamin-related protein 1C OS=Arabidopsis thaliana GN=DRP1C PE=1 SV=2)

HSP 1 Score: 273.092 bits (697), Expect = 1.169e-72
Identity = 135/182 (74.18%), Postives = 155/182 (85.16%), Query Frame = 3
Query:  216 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISP 761
            M++LI L+NKIQRACT LGDHG      +LW++LP +A            LES+VG+DFLPRGSGIVTRRPLVLQLHK E+G+ EYAEFLH P+KRF DFAAVRKEI+DETDR TG++KQIS++PI LSIYSPNVVNLTLIDLPGLTKVAV+GQP+SIVQDIENMVRSY+EKPNCIILAISP
Sbjct:    4 MKSLIGLINKIQRACTVLGDHGGEGM--SLWEALPTVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGTTEYAEFLHAPKKRFADFAAVRKEIEDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYVEKPNCIILAISP 183          
BLAST of CX070278 vs. ExPASy Swiss-Prot
Match: DRP1E_ARATH (Dynamin-related protein 1E OS=Arabidopsis thaliana GN=DRP1E PE=1 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 3.761e-71
Identity = 132/185 (71.35%), Postives = 157/185 (84.86%), Query Frame = 3
Query:  216 MENLISLVNKIQRACTALGDHGE---ASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISP 761
            ME+LI LVN+IQRACT LGD+G    ++A  +LW++LP +A            LESIVG+DFLPRGSGIVTRRPLVLQLHK ++G+ EYAEFLH+P+K+FTDFA VR+EIQDETDR TG+ KQIS VPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQP++I +DIE+MVR+Y++KPNCIILAISP
Sbjct:    4 MESLIGLVNRIQRACTVLGDYGGGTGSNAFNSLWEALPTVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTDDGTEEYAEFLHLPKKQFTDFALVRREIQDETDRITGKNKQISPVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPETIAEDIESMVRTYVDKPNCIILAISP 188          
BLAST of CX070278 vs. ExPASy Swiss-Prot
Match: DRP1D_ARATH (Dynamin-related protein 1D OS=Arabidopsis thaliana GN=DRP1D PE=2 SV=2)

HSP 1 Score: 263.848 bits (673), Expect = 7.093e-70
Identity = 129/183 (70.49%), Postives = 157/183 (85.79%), Query Frame = 3
Query:  216 MENLISLVNKIQRACTALGDHG-EASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISP 761
            ME+LI L+N IQRACT +GDHG +++AL +LW++LP++A            LESIVG+DFLPRGSGIVTRRPLVLQLHK E G+ + AEFLH+  K+FT+F+ VRKEI+DETDR TG+ KQISS+PIHLSI+SPNVVNLTLIDLPGLTKVAVEGQP++IV+DIE+MVRSY+EKPNC+ILAISP
Sbjct:    1 MESLIVLINTIQRACTVVGDHGGDSNALSSLWEALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTENGTEDNAEFLHLTNKKFTNFSLVRKEIEDETDRITGKNKQISSIPIHLSIFSPNVVNLTLIDLPGLTKVAVEGQPETIVEDIESMVRSYVEKPNCLILAISP 183          
BLAST of CX070278 vs. ExPASy Swiss-Prot
Match: DYN_DROME (Dynamin OS=Drosophila melanogaster GN=shi PE=1 SV=2)

HSP 1 Score: 181.8 bits (460), Expect = 3.545e-45
Identity = 98/182 (53.85%), Postives = 124/182 (68.13%), Query Frame = 3
Query:  216 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISP 761
            M++LI++VNK+Q A T+LG H +          LP IA            LE+ VGKDFLPRGSGIVTRRPL+LQL     G  EY EFLHI  K+F+ F  +RKEI+DETDR TG  K IS++PI+L +YSP+V+NLTLIDLPGLTKVA+  QP  I Q I+ M+  +I K  C+ILA++P
Sbjct:    1 MDSLITIVNKLQDAFTSLGVHMQLD--------LPQIAVVGGQSAGKSSVLENFVGKDFLPRGSGIVTRRPLILQLIN---GVTEYGEFLHIKGKKFSSFDEIRKEIEDETDRVTGSNKGISNIPINLRVYSPHVLNLTLIDLPGLTKVAIGDQPVDIEQQIKQMIFQFIRKETCLILAVTP 171          
BLAST of CX070278 vs. ExPASy Swiss-Prot
Match: DYN1_RAT (Dynamin-1 OS=Rattus norvegicus GN=Dnm1 PE=1 SV=2)

HSP 1 Score: 174.481 bits (441), Expect = 5.659e-43
Identity = 96/182 (52.75%), Postives = 120/182 (65.93%), Query Frame = 3
Query:  216 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISP 761
            ME+LI LVN++Q A +A+G + +          LP IA            LE+ VG+DFLPRGSGIVTRRPLVLQL      + EYAEFLH   K+FTDF  VR EI+ ETDR TG  K IS VPI+L +YSP+V+NLTL+DLPG+TKV V  QP  I   I +M+  ++ K NC+ILA+SP
Sbjct:    6 MEDLIPLVNRLQDAFSAIGQNADLD--------LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQL---VNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSP 176          
BLAST of CX070278 vs. ExPASy Swiss-Prot
Match: DYN1_MOUSE (Dynamin-1 OS=Mus musculus GN=Dnm1 PE=1 SV=2)

HSP 1 Score: 174.481 bits (441), Expect = 5.659e-43
Identity = 96/182 (52.75%), Postives = 120/182 (65.93%), Query Frame = 3
Query:  216 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISP 761
            ME+LI LVN++Q A +A+G + +          LP IA            LE+ VG+DFLPRGSGIVTRRPLVLQL      + EYAEFLH   K+FTDF  VR EI+ ETDR TG  K IS VPI+L +YSP+V+NLTL+DLPG+TKV V  QP  I   I +M+  ++ K NC+ILA+SP
Sbjct:    6 MEDLIPLVNRLQDAFSAIGQNADLD--------LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQL---VNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSP 176          
The following BLAST results are available for this feature:
BLAST of CX070278 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
SDLCA_SOYBN4.889e-8789.01Dynamin-related protein 12A OS=Glycine max PE=1 SV... [more]
SDL5A_SOYBN6.385e-8788.46Dynamin-related protein 5A OS=Glycine max PE=2 SV=... [more]
DRP1A_ARATH8.630e-8485.71Dynamin-related protein 1A OS=Arabidopsis thaliana... [more]
DRP1B_ARATH9.242e-7879.23Dynamin-related protein 1B OS=Arabidopsis thaliana... [more]
DRP1C_ARATH1.169e-7274.18Dynamin-related protein 1C OS=Arabidopsis thaliana... [more]
DRP1E_ARATH3.761e-7171.35Dynamin-related protein 1E OS=Arabidopsis thaliana... [more]
DRP1D_ARATH7.093e-7070.49Dynamin-related protein 1D OS=Arabidopsis thaliana... [more]
DYN_DROME3.545e-4553.85Dynamin OS=Drosophila melanogaster GN=shi PE=1 SV=... [more]
DYN1_RAT5.659e-4352.75Dynamin-1 OS=Rattus norvegicus GN=Dnm1 PE=1 SV=2[more]
DYN1_MOUSE5.659e-4352.75Dynamin-1 OS=Mus musculus GN=Dnm1 PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_15H01_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-15H01-P1-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070278 ID=CX070278; Name=CX070278; organism=Citrus sinensis; type=EST; length=761bp
CCTCCCCACTTTCTTTTAAATTTCAAACTCTCTCTCTCTCTCTCTCTCTC
TCTCGTTTGTCCTACCGGCGAAGCAAAAACTAATCACACAGATCTCCTCT
GAACGTCGCCGTTTCCAGCATCAGTTGTCAGATCCAGCTGATCTGAATCT
GACAGCTGAGATCATCTACGTTGCCGCCGCCGTCTCCCGAGATATCTACT
TAGCTGCGAGAGAAAATGGAGAACTTGATTTCTTTGGTTAACAAAATACA
AAGAGCTTGTACGGCTCTTGGCGACCACGGTGAAGCCAGCGCATTGCCTA
CTCTTTGGGACTCTCTTCCTGCTATCGCCGTCGTCGGTGGCCAGAGTTCT
GGAAAGTCATCAGTGTTGGAGAGTATTGTTGGCAAGGACTTTTTACCGCG
TGGATCTGGTATCGTTACACGGCGTCCTCTGGTGTTGCAGCTTCATAAAC
TCGAAGAAGGCAGCAGAGAATATGCAGAGTTTCTTCACATTCCAAGGAAA
AGATTTACCGATTTTGCTGCTGTGAGGAAAGAGATTCAAGATGAGACTGA
TAGAGAGACTGGTCGTACCAAACAAATCTCGAGTGTACCAATTCATCTCA
GCATATATTCCCCTAATGTTGTCAACTTAACGCTGATTGATCTTCCTGGG
CTCACAAAAGTAGCAGTTGAGGGTCAACCAGACAGTATTGTGCAAGATAT
TGAGAATATGGTTCGCTCCTACATTGAGAAGCCCAACTGTATAATTCTTG
CAATTTCACCT
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