CX070274

Overview
NameCX070274
Unique NameCX070274
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length791
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX070274 vs. ExPASy Swiss-Prot
Match: UBP26_ARATH (Ubiquitin carboxyl-terminal hydrolase 26 OS=Arabidopsis thaliana GN=UBP26 PE=1 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 1.251e-40
Identity = 83/135 (61.48%), Postives = 103/135 (76.30%), Query Frame = -2 
Query:  389 VFLVRGKEAPRSILEASESMFEPDXXXXXXXXXXXS--FVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSEIHEHRDIADELSDQKMNVQHVEEGFRGTLLTSNL 787
            V  VRGK AP+++LEAS+S FE D                +LKVSA+T++YQLKMMIWE L V+KENQ LHKG ++IDQE ATLAD+NIFPGD+LWV+D+E+HEHRDIADEL ++K   Q +EEGFRGTLLT N+
Sbjct:  928 VCFVRGKGAPKAMLEASDSSFEVDRRTSKRSRRTNYGNLTSLKVSATTTVYQLKMMIWELLEVMKENQELHKGSKVIDQESATLADMNIFPGDRLWVRDTEMHEHRDIADELCEKKPGAQDIEEGFRGTLLTGNI 1062
[Close]
BLAST of CX070274 vs. ExPASy Swiss-Prot
Match: UBP26_ORYSJ (Ubiquitin carboxyl-terminal hydrolase 26 OS=Oryza sativa subsp. japonica GN=UBP26 PE=2 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 2.442e-36
Identity = 84/134 (62.69%), Postives = 103/134 (76.87%), Query Frame = -2 
Query:  392 VFLVRGKEAPRSILEASESMFEPDXXXXXXXXXXXS--FVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSEIHEHRDIADELSDQKMNVQHVEEGFRGTLLTSN 787
            V+LVRGKEAP+SI EAS ++  PD           S   ++LKVS ST++YQLK+MIWESLG+VKENQ LHKG   I+ + ATLAD  IFPGD LWV+DSEI+E+RDIADE+S+QK+ VQ  EEGFRGTLLTS+
Sbjct:  934 VYLVRGKEAPKSIREASAAVPVPDRRTSKRSRRTTSGNSISLKVSGSTTVYQLKLMIWESLGIVKENQELHKGSVEIEDDFATLADKCIFPGDVLWVKDSEIYENRDIADEISEQKVVVQ-TEEGFRGTLLTSS 1066
[Close]
BLAST of CX070274 vs. ExPASy Swiss-Prot
Match: UBP26_ORYSI (Ubiquitin carboxyl-terminal hydrolase 26 OS=Oryza sativa subsp. indica GN=UBP26 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.442e-36
Identity = 84/134 (62.69%), Postives = 103/134 (76.87%), Query Frame = -2 
Query:  392 VFLVRGKEAPRSILEASESMFEPDXXXXXXXXXXXS--FVNLKVSASTSIYQLKMMIWESLGVVKENQILHKGQRIIDQECATLADLNIFPGDKLWVQDSEIHEHRDIADELSDQKMNVQHVEEGFRGTLLTSN 787
            V+LVRGKEAP+SI EAS ++  PD           S   ++LKVS ST++YQLK+MIWESLG+VKENQ LHKG   I+ + ATLAD  IFPGD LWV+DSEI+E+RDIADE+S+QK+ VQ  EEGFRGTLLTS+
Sbjct:  934 VYLVRGKEAPKSIREASAAVPVPDRRTSKRSRRTTSGNSISLKVSGSTTVYQLKLMIWESLGIVKENQELHKGSVEIEDDFATLADKCIFPGDVLWVKDSEIYENRDIADEISEQKVVVQ-TEEGFRGTLLTSS 1066
The following BLAST results are available for this feature:
BLAST of CX070274 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
UBP26_ARATH1.251e-4061.48Ubiquitin carboxyl-terminal hydrolase 26 OS=Arabid... [more]
UBP26_ORYSJ2.442e-3662.69Ubiquitin carboxyl-terminal hydrolase 26 OS=Oryza ... [more]
UBP26_ORYSI2.442e-3662.69Ubiquitin carboxyl-terminal hydrolase 26 OS=Oryza ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_15G11_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-15G11-N21-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070274 ID=CX070274; Name=CX070274; organism=Citrus sinensis; type=EST; length=791bp
TTTTTTTTTTTCCAGAAATACCTATTACATTGATGGGGACCAGGAACAAT
GGAATGTACATGAGATTAATAAACAAGGCAATACATCCATAACCATATGC
TAAGCTCCAATCCAAAACTTACAAAAGCTAGACAAAGCAGGAGATTTCCA
ATGTTTCACATCTTCCTGAAGTGCCAAATAATAATGCAACTGTTACAAAA
TGCTGCTGAGCTCTATATTTACAATATAACCAGCCCTTCCAGAGAAAATA
AATGCTCACAAACCTTTTATTTGAGCAGTAGATCTCCCATTGCAGGTTAA
AATATTATAAGTTCACACTCGCAGCACCAATATCTACAGAAACTTGGATG
TAATAAACAACTTATACTTCTCAAACAACTTGGGATGAGAGGTTTGATGT
CAAAAGTGTTCCCCGGAAGCCTTCTTCCACATGCTGCACATTCATTTTCT
GGTCAGAAAGCTCATCAGCTATATCTCGATGCTCATGTATTTCTGAATCT
TGCACCCAAAGCTTATCACCAGGGAATATATTCAAGTCTGCAAGAGTAGC
ACATTCCTGGTCAATTATTCTCTGACCCTTGTGAAGTATCTGGTTTTCTT
TAACAACCCCAAGAGATTCCCATATCATCATTTTTAACTGGTATATGGAT
GTTGAAGCAGAAACTTTTAAATTTACGAAACTCCTGGTCTTCCTAGAGCG
CTTTGAGGCTCGTCGATCTGGCTCAAACATGGACTCAGATGCCTCCAAAA
TTGACCTTGGAGCTTCCTTTCCACGTACAAGGAATACAGAT
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