CX070263

Overview
NameCX070263
Unique NameCX070263
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length781
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4342 contig Csv1_Contig4342:1..781. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX070263 vs. ExPASy Swiss-Prot
Match: CPL4_ARATH (RNA polymerase II C-terminal domain phosphatase-like 4 OS=Arabidopsis thaliana GN=CPL4 PE=1 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 9.385e-41
Identity = 100/231 (43.29%), Postives = 139/231 (60.17%), Query Frame = 2
Query:    5 ETAKLLDPRREYFNARVIS*DDGTQRHQKGLDVVLGQESAVLILDDTENAST*QGDNLILMERYHFFASSCRQFGYHCQSLSQLRSVVCELEGALASILKDLKRIHNMFFK-------------VLKMVRGKS*RGVNLSSVMLFQANFQ----HIFTICGRWWSS*ELRAR*NLIHQ*HTWFQTNAQTKKSHWAAKEAKFLVDPRWIEAANCLWQGQLEEKFPVKQTKPE 646
            + AKLLDP+ EYF  RVIS DDGT RH+K LDVVLGQESAVLILDDTENA     DNLI++ERYHFF+SSCRQF +  +SLS+L+S   E +GALA++LK LK+ H +FF+             +LK VR +  +G  +    +F    +     ++ +     ++       ++ H        +  T+K+ WA +E K++V   WI+AAN LW  Q EE F ++Q K +
Sbjct:  209 QMAKLLDPKGEYFGDRVISRDDGTVRHEKSLDVVLGQESAVLILDDTENAWPKHKDNLIVIERYHFFSSSCRQFDHRYKSLSELKSDESEPDGALATVLKVLKQAHALFFENVDEGISNRDVRLMLKQVRKEILKGCKIVFSRVFPTKAKPEDHPLWKMAEELGATCATEVDASVTHV----VAMDVGTEKARWAVREKKYVVHRGWIDAANYLWMKQPEENFGLEQLKKQ 435          
BLAST of CX070263 vs. ExPASy Swiss-Prot
Match: CPL3_ARATH (RNA polymerase II C-terminal domain phosphatase-like 3 OS=Arabidopsis thaliana GN=CPL3 PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.155e-14
Identity = 75/231 (32.47%), Postives = 108/231 (46.75%), Query Frame = 2
Query:    5 ETAKLLDPRREYFNARVIS*DD------GTQRHQKGLDV--VLGQESAVLILDDTENAST*QGDNLILMERYHFFASSCRQFGYHCQSLSQLRSVVCELEGALASILKDLKRIHNMFF-----------KVLKMVRGKS*RGVNL--SSVMLFQANFQHIFTICGRWWSS*ELRAR*NLIHQ*H-TWFQTNA-QTKKSHWAAKEAKFLVDPRWIEAANCLWQGQLEEKFPV 628
            E AKLLDP+   FN RVIS  D      G +R  K  D+  V+G ES+V+I+DD+         NLI +ERY +F  S RQFG    SL +L       EG LAS L  +++IH  FF            +L   + K   G  +  S ++       H+  +   W ++ +  A        H T   TN+  T K +WA    +F+V P W+EA+  L+Q   E  + +
Sbjct: 1012 EMAKLLDPKGVLFNGRVISKGDDGDPLDGDERVPKSKDLEGVMGMESSVVIIDDSVRVWPQHKMNLIAVERYLYFPCSRRQFGLLGPSLLELDRDEVPEEGTLASSLAVIEKIHQNFFSHTSLDEVDVRNILASEQRKILAGCRIVFSRIIPVGEAKPHLHPL---WQTAEQFGAVCTTQVDEHVTHVVTNSLGTDKVNWALTRGRFVVHPGWVEASAFLYQRANENLYAI 1239          
The following BLAST results are available for this feature:
BLAST of CX070263 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
CPL4_ARATH9.385e-4143.29RNA polymerase II C-terminal domain phosphatase-li... [more]
CPL3_ARATH1.155e-1432.47RNA polymerase II C-terminal domain phosphatase-li... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_15G04_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-15G04-N7-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070263 ID=CX070263; Name=CX070263; organism=Citrus sinensis; type=EST; length=781bp
CTTAGAAACAGCTAAGTTGCTTGATCCCAGGAGAGAGTACTTCAACGCTA
GAGTGATTTCATGAGATGATGGCACTCAAAGACATCAGAAGGGTCTTGAT
GTGGTGTTGGGGCAAGAAAGTGCCGTTCTGATTCTTGATGACACAGAAAA
TGCATCGACATAGCAGGGGGACAATTTGATACTAATGGAAAGATATCATT
TCTTTGCTTCAAGTTGTCGGCAATTTGGCTACCACTGTCAATCTTTATCT
CAGTTAAGGAGTGTTGTATGTGAGCTGGAGGGTGCACTTGCATCCATTCT
TAAAGATCTCAAGCGAATCCACAATATGTTCTTCAAGGTACTGAAAATGG
TCAGAGGGAAGTCTTAAAGGGGTGTAAACTTGTCTTCAGTCATGCTTTTC
CAAGCAAATTTCCAGCACATATTCACTATCTGTGGAAGGTGGTGGAGCAG
TTAGGAGCTACGCGCTCGATAGAACTTGATCCATCAGTGACACACGTGGT
TTCAAACAAATGCTCAAACGAAAAAGTCTCACTGGGCAGCAAAGGAGGCC
AAGTTTTTGGTGGATCCACGGTGGATAGAGGCAGCCAACTGTTTGTGGCA
AGGGCAACTCGAAGAGAAGTTTCCTGTGAAGCAAACCAAACCTGAAGAGA
ACTTTCAAGCGAAACAAACGAAGGACCAATAACCGATACGTTTATGTAGT
TGCTAACCCTCCAGTGAATCTTTATGAATGTCTTGGTTCTTTCCTAGCAT
CATTATCGGTGCATGATCGATGTGCATCAAT
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