CX070160

Overview
NameCX070160
Unique NameCX070160
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length772
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2610 contig Csv1_Contig2610:596..1365. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX070160 vs. ExPASy Swiss-Prot
Match: CCD25_PONAB (Coiled-coil domain-containing protein 25 OS=Pongo abelii GN=CCDC25 PE=2 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 1.471e-30
Identity = 70/133 (52.63%), Postives = 83/133 (62.41%), Query Frame = 1
Query:   10 VLEDCAQLVKANSIQGNKVNNIDVVYTPWANLKKTASMDVGQVGFHNPKMVRTVKVEKRINEIVNRLNKTKVERKPDLKXXXXXXXXXXXXXXKLQLXXXXXXXXXXXXXXXXQAEVRSYKGLMVAEKMTSNK 408
            VL DCA LVKANSIQG K+NN++VVYTPW+NLKKTA MDVGQ+GFH  K V+ V VEK++NEI+NRL KTKVER PDL               K Q+                  E+RSY  LM  E M+SN+
Sbjct:   67 VLMDCAHLVKANSIQGCKMNNVNVVYTPWSNLKKTADMDVGQIGFHRQKDVKIVTVEKKVNEILNRLEKTKVERFPDLAAEKECRDREERNEKKAQIQEMKRREKEEMKKKREMDELRSYSSLMKVENMSSNQ 199          
BLAST of CX070160 vs. ExPASy Swiss-Prot
Match: CCD25_HUMAN (Coiled-coil domain-containing protein 25 OS=Homo sapiens GN=CCDC25 PE=1 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 1.471e-30
Identity = 70/133 (52.63%), Postives = 83/133 (62.41%), Query Frame = 1
Query:   10 VLEDCAQLVKANSIQGNKVNNIDVVYTPWANLKKTASMDVGQVGFHNPKMVRTVKVEKRINEIVNRLNKTKVERKPDLKXXXXXXXXXXXXXXKLQLXXXXXXXXXXXXXXXXQAEVRSYKGLMVAEKMTSNK 408
            VL DCA LVKANSIQG K+NN++VVYTPW+NLKKTA MDVGQ+GFH  K V+ V VEK++NEI+NRL KTKVER PDL               K Q+                  E+RSY  LM  E M+SN+
Sbjct:   67 VLMDCAHLVKANSIQGCKMNNVNVVYTPWSNLKKTADMDVGQIGFHRQKDVKIVTVEKKVNEILNRLEKTKVERFPDLAAEKECRDREERNEKKAQIQEMKKREKEEMKKKREMDELRSYSSLMKVENMSSNQ 199          
BLAST of CX070160 vs. ExPASy Swiss-Prot
Match: CCD25_BOVIN (Coiled-coil domain-containing protein 25 OS=Bos taurus GN=CCDC25 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.921e-30
Identity = 69/133 (51.88%), Postives = 84/133 (63.16%), Query Frame = 1
Query:   10 VLEDCAQLVKANSIQGNKVNNIDVVYTPWANLKKTASMDVGQVGFHNPKMVRTVKVEKRINEIVNRLNKTKVERKPDLKXXXXXXXXXXXXXXKLQLXXXXXXXXXXXXXXXXQAEVRSYKGLMVAEKMTSNK 408
            VL DCA LVKANSIQG K+NN++VVYTPW+NLKKTA MDVGQ+GFH  K V+ V VEK++NEI+NRL KTK+ER PDL+              K Q+                  E+RSY  LM  E M+SN+
Sbjct:   67 VLMDCAHLVKANSIQGCKMNNVNVVYTPWSNLKKTADMDVGQIGFHRQKDVKIVTVEKKVNEILNRLEKTKMERFPDLEAEKECRDHEERNEKKAQIQEMKRREKEEMKKKREMDELRSYSSLMKVENMSSNQ 199          
BLAST of CX070160 vs. ExPASy Swiss-Prot
Match: CCD25_MOUSE (Coiled-coil domain-containing protein 25 OS=Mus musculus GN=Ccdc25 PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 7.299e-30
Identity = 68/133 (51.13%), Postives = 83/133 (62.41%), Query Frame = 1
Query:   10 VLEDCAQLVKANSIQGNKVNNIDVVYTPWANLKKTASMDVGQVGFHNPKMVRTVKVEKRINEIVNRLNKTKVERKPDLKXXXXXXXXXXXXXXKLQLXXXXXXXXXXXXXXXXQAEVRSYKGLMVAEKMTSNK 408
            VL DCA LVKANSIQG K+NN++VVYTPW+NLKKTA MDVGQ+GFH  K V+ V VEK++NEI+NRL KTK+E+ PDL               K Q+                  E+RSY  LM  E M+SN+
Sbjct:   67 VLMDCAHLVKANSIQGCKMNNVNVVYTPWSNLKKTADMDVGQIGFHRQKDVKIVTVEKKVNEILNRLEKTKLEKFPDLAAEKEGRDREERNEKKAQIQEMKRKEKEEMKKKREMDELRSYSSLMKVENMSSNQ 199          
BLAST of CX070160 vs. ExPASy Swiss-Prot
Match: CCD25_XENTR (Coiled-coil domain-containing protein 25 OS=Xenopus tropicalis GN=ccdc25 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.054e-28
Identity = 70/133 (52.63%), Postives = 84/133 (63.16%), Query Frame = 1
Query:   10 VLEDCAQLVKANSIQGNKVNNIDVVYTPWANLKKTASMDVGQVGFHNPKMVRTVKVEKRINEIVNRLNKTKVERKPDLKXXXXXXXXXXXXXXKLQLXXXXXXXXXXXXXXXXQAEVRSYKGLMVAEKMTSNK 408
            VL DCAQLVKANSIQG K+NNI+VVYTPWANLKKTA MD+GQ+GFH  K V+T+ VEK +++IVNRL KTK ER PDL               K Q+                  E+RSY  LM +E M+SN+
Sbjct:   66 VLLDCAQLVKANSIQGCKMNNINVVYTPWANLKKTADMDIGQIGFHRQKDVKTMTVEK-VSKIVNRLEKTKDERFPDLAAEKEARDREERNEKKAQIQEIKRKEKEEMKKKKEMDELRSYSSLMKSENMSSNQ 197          
BLAST of CX070160 vs. ExPASy Swiss-Prot
Match: CCD25_DANRE (Coiled-coil domain-containing protein 25 OS=Danio rerio GN=ccdc25 PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.377e-28
Identity = 65/133 (48.87%), Postives = 82/133 (61.65%), Query Frame = 1
Query:   10 VLEDCAQLVKANSIQGNKVNNIDVVYTPWANLKKTASMDVGQVGFHNPKMVRTVKVEKRINEIVNRLNKTKVERKPDLKXXXXXXXXXXXXXXKLQLXXXXXXXXXXXXXXXXQAEVRSYKGLMVAEKMTSNK 408
            VL DC QLVK NSIQG K+NNI++VYTPW+NLKKTA MD+GQ+GFH  K V+ V VEK+INEIVNRL KTK ER PDL               K Q+                  ++++Y  LM ++ MT+N+
Sbjct:   66 VLIDCVQLVKNNSIQGCKMNNINIVYTPWSNLKKTADMDIGQIGFHRQKEVKIVAVEKKINEIVNRLEKTKEERYPDLAAEKESRDREERNEKKAQIQEQKKKEKEEVKKKKEMEDLKNYTSLMKSDNMTTNE 198          
BLAST of CX070160 vs. ExPASy Swiss-Prot
Match: CCD25_DICDI (Coiled-coil domain-containing protein 25 homolog OS=Dictyostelium discoideum GN=ccdc25 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.439e-19
Identity = 51/150 (34.00%), Postives = 80/150 (53.33%), Query Frame = 1
Query:   10 VLEDCAQLVKANSIQGNKVNNIDVVYTPWANLKKTASMDVGQVGFHNPKMVRTVKVEKRINEIVNRLNKTKVERKPDLKXXXXXXXXXXXXXXKLQLXXXXXXXXXXXXXXXXQAEVRSYKGLMVAEKMTSNKQIASESKSLQELEEDFM 459
            +LE+C QLVK NSIQG K  ++D+VYTPWANLKKTA M+ GQV +HN + V+ V+  ++ ++I+NR+ KT+ +R+ DL               + +                   +++ Y  +M  + M  NK   ++       E+DFM
Sbjct:   64 ILEECCQLVKQNSIQGCKEASVDIVYTPWANLKKTAGMEAGQVLYHNEREVKYVRNVRKDSKIINRIEKTREKREVDLMHERDSRDKSERHEKRKEQEEKRRAEKKAYEEKQKMEDIKKYTSIMKTDNMKFNKYNPTD-------EDDFM 206          
BLAST of CX070160 vs. ExPASy Swiss-Prot
Match: JLP2_YEAST (Protein JLP2 OS=Saccharomyces cerevisiae GN=JLP2 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.811e-11
Identity = 33/73 (45.21%), Postives = 48/73 (65.75%), Query Frame = 1
Query:   10 VLEDCAQLVKANSIQGNKVNNIDVVYTPWANLKKTASMDVGQVGFHNPKMVRTVKVEKRINEIVNRLNKTKVE 228
            V+ DC QL K+ SIQGNK+    ++ TPW NL+K   M+ G+V F + +  R ++   R N+I+NRL KT+VE
Sbjct:   71 VICDCLQLCKSESIQGNKMPQCTILITPWHNLRKNRYMNPGEVSFKSLRQCRKMECGARDNKILNRLAKTRVE 143          
The following BLAST results are available for this feature:
BLAST of CX070160 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
CCD25_PONAB1.471e-3052.63Coiled-coil domain-containing protein 25 OS=Pongo ... [more]
CCD25_HUMAN1.471e-3052.63Coiled-coil domain-containing protein 25 OS=Homo s... [more]
CCD25_BOVIN1.921e-3051.88Coiled-coil domain-containing protein 25 OS=Bos ta... [more]
CCD25_MOUSE7.299e-3051.13Coiled-coil domain-containing protein 25 OS=Mus mu... [more]
CCD25_XENTR1.054e-2852.63Coiled-coil domain-containing protein 25 OS=Xenopu... [more]
CCD25_DANRE1.377e-2848.87Coiled-coil domain-containing protein 25 OS=Danio ... [more]
CCD25_DICDI4.439e-1934.00Coiled-coil domain-containing protein 25 homolog O... [more]
JLP2_YEAST5.811e-1145.21Protein JLP2 OS=Saccharomyces cerevisiae GN=JLP2 P... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_15B06_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-15B06-D11-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070160 ID=CX070160; Name=CX070160; organism=Citrus sinensis; type=EST; length=772bp
AGTGAAGGCGTATTGGAAGATTGTGCTCAGCTTGTCAAAGCTAATTCCAT
TCAAGGCAATAAGGTGAATAACATTGATGTTGTTTATACACCTTGGGCCA
ATTTGAAGAAAACTGCTTCCATGGATGTTGGCCAAGTTGGTTTCCACAAT
CCGAAGATGGTTCGGACAGTGAAAGTGGAGAAAAGAATAAATGAGATAGT
TAATAGATTGAACAAAACAAAAGTGGAGAGGAAACCTGATTTGAAAGCGG
AAAGAGAGGCTGCAAATGCTGCAGAAAGAGCTGAGAGAAAGCTTCAGCTG
AGAGATAAAAAACGGCGGGAGGAAATGGAAAGGCTTGAGAAGGAGAGACA
AGCTGAGGTAAGGAGCTACAAGGGACTGATGGTTGCCGAAAAGATGACAT
CTAACAAACAAATTGCATCAGAGAGCAAGTCCTTACAGGAACTGGAAGAG
GACTTTATGTAAGCACATAACTATTACCCGTTGAGTTAAGAGCATCTAGA
TTTGCTGCCTTAGAAAAATGTGAGAGTTTGGCATTCAGTTTTTGTAAGTT
ATCATCCCTCTGTAGTAATAAATCACCTTAATCCTAATCTGTCACCCGAG
GATTTAGTAACAAATATAAATATGCAACCTTGGGGAGGGAGATGGGGGAG
TTAAGAGGGGGAAGATGAACTTCATTATATCGCCCATCCATATGCTGTAC
TTTGATAATGACGAAACATGATCTGAATCTGTATGTGTGATTGATGGATG
ATGAACCTGTGCTTTTGTCGTC
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