CX070149

Overview
NameCX070149
Unique NameCX070149
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length785
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070149 vs. ExPASy Swiss-Prot
Match: DBR1_ARATH (Lariat debranching enzyme OS=Arabidopsis thaliana GN=DBR1 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.412e-36
Identity = 79/144 (54.86%), Postives = 99/144 (68.75%), Query Frame = -2
Query:  353 DSPVTKFLALDKCLPRRKFLQVFEIESGQGPYEIQYDEEWLAITRTFNSVFPLTSQSANFGGVQHDMNDCRQWVRSRLQERGAKPFEFVRTVPCYDASQSLSIGAFAENPQNPQTESFLQFLELPNLFENALESREPTQSPATL 784
            D  VTKFLALDKCLP +KFLQ+ EIES  GP+E+ YDEEWLAITR FNS+FPLT +  N       + + R+WVR +L+ER  KPFEF RTVP Y+ SQ +   +  E PQNPQT S L+ L LP L +++  + E T  PA+L
Sbjct:  240 DGSVTKFLALDKCLPGKKFLQIIEIESEPGPFEVLYDEEWLAITRKFNSIFPLTRRYTNV-STAGTIQESREWVRKKLEERQFKPFEFARTVPAYNPSQRV-FDSIPEIPQNPQTLSLLELLGLPYLLDSSPVTGERTDIPASL 381          
BLAST of CX070149 vs. ExPASy Swiss-Prot
Match: DBR1_ORYSJ (Lariat debranching enzyme OS=Oryza sativa subsp. japonica GN=DBR1 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.012e-34
Identity = 75/129 (58.14%), Postives = 88/129 (68.22%), Query Frame = -2
Query:  392 PVTKFLALDKCLPRRKFLQVFEIESGQGPYEIQYDEEWLAITRTFNSVFPLTSQSANFGGVQHDMNDCRQWVRSRLQERGAKPFEFVRTVPCYDASQSLSIGAFAENPQNPQTESFLQFLELPNLFENA 778
            P TKFLALDKCLPRR FLQV +I SG GP+EIQYDEEWLAITR FN+VF LT         Q D  D  QWVR++L  RGAKP +FV+T   YD S   S  +   + +NPQTESFLQ L LP L +++
Sbjct:  242 PTTKFLALDKCLPRRGFLQVIDIPSGPGPHEIQYDEEWLAITRKFNNVFSLTRMPFTMLDEQVDTQDDLQWVRNKLNARGAKPIDFVQTAASYDPSCQASNPSITVHCRNPQTESFLQLLNLPYLLDSS 370          
BLAST of CX070149 vs. ExPASy Swiss-Prot
Match: DBR1_DROME (Lariat debranching enzyme OS=Drosophila melanogaster GN=ldbr PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.217e-12
Identity = 50/136 (36.76%), Postives = 72/136 (52.94%), Query Frame = -2
Query:  431 PVTKFLALDKCLPRRKFLQVFEIESG--QGPYEIQYDEEWLAITRTFNSVFPLT--------------SQSANFGGVQHDMNDCRQWVRSRLQERGAKPFEFVRTVPCYD-ASQSLSIGAFAENPQ---NPQTESF 778
            PVTKFLALDKCLPRR FLQV E+ S   +G   ++YD EWLAI  + N +  +               ++ +NF   + ++    + V ++ Q+    P  F RTVP +D A QS     F + P+   NPQ+ +F
Sbjct:  279 PVTKFLALDKCLPRRAFLQVVEVPSDPIEGTPRLEYDAEWLAILHSTNHLISVKENYYYLPGKKAGEFTERSNFTPTEEEL----EAVTAKFQKLQV-PENFERTVPAFDPAEQSDYKHMFVDQPKVQLNPQSNTF 409          
The following BLAST results are available for this feature:
BLAST of CX070149 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
DBR1_ARATH1.412e-3654.86Lariat debranching enzyme OS=Arabidopsis thaliana ... [more]
DBR1_ORYSJ1.012e-3458.14Lariat debranching enzyme OS=Oryza sativa subsp. j... [more]
DBR1_DROME9.217e-1236.76Lariat debranching enzyme OS=Drosophila melanogast... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_15A09_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-15A09-B17-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070149 ID=CX070149; Name=CX070149; organism=Citrus sinensis; type=EST; length=785bp
TTTTTTTTGGTTGTCACAATCACATAAACACCAAATAGGGTTTACCATTT
CGACAAATTGATCAGTTTACAGATTACAAAGTGATGCATTGCCAGCAAGC
ACACAAAAAGGTCAATGAGAAGCCAAAAGCCTGACAATTCTCAGTGAAAT
GGTAACAGCCACACATTTCATCTGGGGTAAGAAAAATGTTTTTACAGAGA
AGAAGAGATAGTGATAGTGACTTATTATGTACAAAGAATCTTCATAACTT
TTCACTCTCCGCAGCTGCATCATCCTATTCATCAAGTTCTTCTAATTCAT
CCTCATCATCAATAGGAATTTCTTCAGGATCAAGATCAGGACCTTTATGA
TCCAAAGTGGCAGGACTCTGGGTTGGCTCTCTTGATTCTAATGCATTTTC
AAAAAGATTCGGAAGTTCTAGAAACTGCAAGAAAGACTCTGTTTGTGGAT
TCTGAGGATTTTCAGCAAAGGCACCAATAGACAGAGATTGAGAGGCATCA
TAACAGGGAACTGTCCGTACAAACTCGAAAGGTTTGGCTCCTCTTTCTTG
TAGCCTGCTTCTGACCCATTGACGACAATCATTCATGTCATGCTGAACAC
CCCCGAAATTTGCACTTTGCGAGGTCAAAGGGAAGACAGAGTTGAAGGTC
CGTGTTATAGCCAGCCATTCCTCGTCATACTGAATCTCATAAGGTCCTTG
TCCCGATTCAATTTCAAAAACCTGTAAGAATTTGCGCCTTGGAAGACACT
TATCAAGCGCAAGAAATTTTGTAACTGGACTGTCT
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