CX070139

Overview
NameCX070139
Unique NameCX070139
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length850
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX070139_ssr93 microsatellite CX070139_ssr93:93..104. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4882 contig Csv1_Contig4882:959..1808. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX070139 vs. ExPASy Swiss-Prot
Match: STS3_ARATH (Strictosidine synthase 3 OS=Arabidopsis thaliana GN=SS3 PE=2 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 1.196e-23
Identity = 80/228 (35.09%), Postives = 108/228 (47.37%), Query Frame = -1
Query:  179 LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDKSGRLLKYDPLKKNVTVMYNGLSFPNGVXXXXXXXXXXXXXXATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKS-DSKGEFWIA--MNSARGKIE-SNKKTAFCEETAKPWFLRDPVGVKFXXXXXXXXXXXXXXXNTLNSVSEVQEYGEYLYTGSSVQPYVVVIK 850
            L V+   GG A+++A S GG PF F + LD+DP TG+VYFT  S  F  R    ++AT D +G+  KYDP KK VTV+  GLS   G                   I R+W++G +   T + F      PDNIK   S G FW+A  +NSA G    S  K +   +  +   L+D  G                  +TL  VSEV EY   LY G+   P+  ++K
Sbjct:  122 LHVIPRRGGLAKKIADSVGGKPFLFLDGLDVDPTTGVVYFTSFSSTFGPRDVLKAVATKDSTGKFFKYDPSKKVVTVLMEGLSGSAGCAVSSDGSFVLVGQFTKSNIKRYWIKGSKAG-TSEDFTNSVSNPDNIKRIGSTGNFWVASVVNSATGPTNPSAVKVSSAGKVLQTIPLKDKFG------------------DTL--VSEVNEYKGQLYIGALFGPFAGILK 328          
BLAST of CX070139 vs. ExPASy Swiss-Prot
Match: STSY_RAUSE (Strictosidine synthase OS=Rauvolfia serpentina GN=STR1 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.023e-22
Identity = 65/214 (30.37%), Postives = 100/214 (46.73%), Query Frame = -1
Query:  209 LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDKSGRLLKYDPLKKNVTVMYNGLSFPNGVXXXXXXXXXXXXXXATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFXXXXXXXXXXXXXXXNTLNSVSEVQEYGEYLYTGS 850
            L VVG  GG A QLA+S  G+PF++   + +D  TGIVYFTD S  +  R     + T DK+GRL+KYDP  K  T++   L  P G                + +I+++WL+G +   T ++  ++P  P NIK ++ G FW+   S+  +++ N                DP G+KF                      ++QE+   LY G+
Sbjct:  125 LSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKG-TAEVLVKIPN-PGNIKRNADGHFWV---SSSEELDGNMHGRV-----------DPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGT 322          
BLAST of CX070139 vs. ExPASy Swiss-Prot
Match: STSY_RAUMA (Strictosidine synthase (Fragment) OS=Rauvolfia mannii GN=STR1 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.023e-22
Identity = 65/214 (30.37%), Postives = 100/214 (46.73%), Query Frame = -1
Query:  209 LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDKSGRLLKYDPLKKNVTVMYNGLSFPNGVXXXXXXXXXXXXXXATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFXXXXXXXXXXXXXXXNTLNSVSEVQEYGEYLYTGS 850
            L VVG  GG A QLA+S  G+PF++   + +D  TGIVYFTD S  +  R     + T DK+GRL+KYDP  K  T++   L  P G                + +I+++WL+G +   T ++  ++P  P NIK ++ G FW+   S+  +++ N                DP G+KF                      ++QE+   LY G+
Sbjct:  123 LSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKG-TAEVLVKIPN-PGNIKRNADGHFWV---SSSEELDGNMHGRV-----------DPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGT 320          
BLAST of CX070139 vs. ExPASy Swiss-Prot
Match: STS1_ARATH (Strictosidine synthase 1 OS=Arabidopsis thaliana GN=SS1 PE=2 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 2.333e-19
Identity = 73/234 (31.20%), Postives = 104/234 (44.44%), Query Frame = -1
Query:  179 LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDKSGRLLKYDPLKKNVTVMYNGLSFPNGVXXXXXXXXXXXXXXATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKS-DSKGEFWIA---------MNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFXXXXXXXXXXXXXXXNTLNSVSEVQEYGEYLYTGSSVQPYVVVIK 850
            L V+ P GG A ++  S  G PF+F + LD+DP TG+VYFT  S  F   Q  +++   D +G+L KYDP  K VTV+  GLS   G                   I R+W++G +   + + F      PDNIK   S G FW+A          N +  K+ SN       E  +   L+D  G                  +TL  +SEV E+   LY G+   P+  ++K
Sbjct:  120 LHVISPAGGLATKITDSVDGKPFKFLDGLDVDPTTGVVYFTSFSSRFSPIQVLIALGLKDATGKLYKYDPSTKVVTVLMEGLSGSAGCAVSSDGSFVLVSQFTKSNIKRYWIKGPKAG-SSEDFTNSVSNPDNIKRIGSTGNFWVASVVNKIIVPTNPSAVKVNSN------GEVLQTIPLKDKFG------------------DTL--LSEVNEFEGNLYIGTLTGPFAGILK 326          
BLAST of CX070139 vs. ExPASy Swiss-Prot
Match: APMAP_CHICK (Adipocyte plasma membrane-associated protein OS=Gallus gallus GN=APMAP PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.158e-18
Identity = 70/240 (29.17%), Postives = 96/240 (40.00%), Query Frame = -1
Query:  191 LMVVGPNGGQAQQLASSAG---GIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDKSGRLLKYDPLKKNVTVMYNGLSFPNGVXXXXXXXXXXXXXXATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLR-----------------DPVGVKFXXXXXXXXXXXXXXXNTLNSVSEVQEYGEYLYTGSSVQPYV 850
            L  V P  G+ + L S+     G    F NDL +  +   +YFTDSS  +QRR +   +  G   GRLL+YD + K V V+  GL FPNGV              A  +I R+++ G            MP  PDNI+  S G +W+AM   R     +      E   KPW  R                   + V+                 T+  VSE  E+  YLY GS   P++
Sbjct:  171 LYEVNPGTGETKMLVSTKTLIEGQKLSFLNDLTVTQDGRKIYFTDSSSKWQRRDFLFLVMEGTDDGRLLEYDTVTKEVKVLMVGLRFPNGVQLSPAEDFVLVLETAMARIRRYYVSGLMKGGADMFVENMPGLPDNIRLSSSGGYWVAMPVVRPNPGFSMLDFLSE---KPWIKRMIFKLLSQETVTKLLPKRSLVVELSETGSYRRSFHDPTGLTVPYVSEAHEHNGYLYLGSFRSPFI 407          
BLAST of CX070139 vs. ExPASy Swiss-Prot
Match: STSY_CATRO (Strictosidine synthase OS=Catharanthus roseus GN=STR1 PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.975e-18
Identity = 54/147 (36.73%), Postives = 80/147 (54.42%), Query Frame = -1
Query:  416 LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTD-SSIYFQRRQYFMSIA-TGDKSGRLLKYDPLKKNVTVMYNGLSFPNGVXXXXXXXXXXXXXXATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIA 850
            L VVG  GG A QLA+S  G+PF++   + +D  TGIVYFTD SSI+    +    I  T D++GRL+KYDP  K  T++   L  P G                + +I+++WL+G +   + +    +P  P NIK +S G FW++
Sbjct:  129 LCVVGKEGGYATQLATSVQGVPFKWLYAVTVDQRTGIVYFTDVSSIHDDSPEGVEEIMNTSDRTGRLMKYDPSTKETTLLLKELHVPGGAEISADGSFVVVAEFLSNRIVKYWLEGPKKG-SAEFLVTIPN-PGNIKRNSDGHFWVS 273          
BLAST of CX070139 vs. ExPASy Swiss-Prot
Match: APMAP_RAT (Adipocyte plasma membrane-associated protein OS=Rattus norvegicus GN=Apmap PE=2 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 2.580e-18
Identity = 69/237 (29.11%), Postives = 96/237 (40.51%), Query Frame = -1
Query:  191 LMVVGPNGGQAQQLASSAG---GIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDKSGRLLKYDPLKKNVTVMYNGLSFPNGVXXXXXXXXXXXXXXATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNSARGK--------------IESNKKTAFCEETAKPWFLRDPVGVKFXXXXXXXXXXXXXXXNTLNSVSEVQEYGEYLYTGSSVQPYV 850
            L  V P     + L SS     G    F NDL I  +   +YFTDSS  +QRR Y + +  G   GRLL+YD + K V V+ + L FPNGV              A  +I R ++ G            MP FPDNI+  S G +W+A  + R                I+      F +ET   +  R  + ++                  +  VSE  E+  YLY GS   P++
Sbjct:  132 LFEVNPQKRSVKLLLSSETPIEGKKMSFVNDLTITRDGRKIYFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDTVTKEVKVLLDQLQFPNGVQLSPEEDFVLVAETAMARIRRVYVSGLMKGGADMFVENMPGFPDNIRPSSSGGYWVAAATIRANPGFSMLDFLSDKPFIKRMIFKLFSQETVMKFVPRYSLVLEVSDSGAFRRSLHDPDGQVVTYVSEAHEHDGYLYLGSFRSPFI 368          
BLAST of CX070139 vs. ExPASy Swiss-Prot
Match: APMAP_BOVIN (Adipocyte plasma membrane-associated protein OS=Bos taurus GN=APMAP PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.400e-18
Identity = 68/237 (28.69%), Postives = 101/237 (42.62%), Query Frame = -1
Query:  191 LMVVGPNGGQAQQLASSAGGIPFR---FTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDKSGRLLKYDPLKKNVTVMYNGLSFPNGVXXXXXXXXXXXXXXATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNSARGK--------------IESNKKTAFCEETAKPWFLRDPVGVKFXXXXXXXXXXXXXXXNTLNSVSEVQEYGEYLYTGSSVQPYV 850
            L  V P   + + L SS   I  R   F NDL +  +   +YFTDSS  +QRR Y + +  G   GRLL+YD   K V V+ + L FPNGV              A ++I RF++ G            +P FPDNI++ S G +W++M + R                ++      F +ET   +  R  + ++                  +  VSE  E+  +LY GS   PY+
Sbjct:  171 LFEVNPWKREVKLLLSSETPIEGRKMSFLNDLTVTRDGRKIYFTDSSSKWQRRDYLLLLMEGTDDGRLLEYDTQTKEVKVLLDHLRFPNGVQLSPAEDFVLVVELAMVRIRRFYVSGLMKGGADVFVENLPGFPDNIRASSSGGYWVSMAAIRANPGFSMLDFLSERPFLKKVIFKLFSQETVMKFVPRYSLVLELSDSGTFLRSLHDPEGQVVTYVSEAHEHSGHLYLGSFRAPYL 407          
BLAST of CX070139 vs. ExPASy Swiss-Prot
Match: APMAP_MOUSE (Adipocyte plasma membrane-associated protein OS=Mus musculus GN=Apmap PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.672e-17
Identity = 66/237 (27.85%), Postives = 94/237 (39.66%), Query Frame = -1
Query:  191 LMVVGPNGGQAQQLASSAG---GIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDKSGRLLKYDPLKKNVTVMYNGLSFPNGVXXXXXXXXXXXXXXATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNSARGK--------------IESNKKTAFCEETAKPWFLRDPVGVKFXXXXXXXXXXXXXXXNTLNSVSEVQEYGEYLYTGSSVQPYV 850
            L  V P     + L SS     G    F NDL +  +   +YFTDSS  +QRR Y + +      GRLL+YD + K V V+ + L FPNGV                 +I R ++ G            MP FPDNI+  S G +W+A  + R                I+      F +ET   +  R  + ++                  +  VSE  E+  YLY GS   P++
Sbjct:  171 LFEVNPQKRSVKLLLSSETPIEGKKMSFVNDLTVTRDGRKIYFTDSSSKWQRRDYLLLVMEATDDGRLLEYDTVTKEVKVLLDQLQFPNGVQLSPEEDFVLVAETTMARIRRVYVSGLMKGGADMFVENMPGFPDNIRPSSSGGYWVAAATIRANPGFSMLDFLSDKPFIKRMIFKMFSQETVMKFVPRYSLVLEVSDSGAFRRSLHDPDGQVVTYVSEAHEHDGYLYLGSFRSPFI 407          
BLAST of CX070139 vs. ExPASy Swiss-Prot
Match: APMAP_DANRE (Adipocyte plasma membrane-associated protein OS=Danio rerio GN=apmap PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.725e-17
Identity = 67/237 (28.27%), Postives = 94/237 (39.66%), Query Frame = -1
Query:  191 LMVVGPNGGQAQQLASSAGGIPFR---FTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDKSGRLLKYDPLKKNVTVMYNGLSFPNGVXXXXXXXXXXXXXXATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNSARGK--------------IESNKKTAFCEETAKPWFLRDPVGVKFXXXXXXXXXXXXXXXNTLNSVSEVQEYGEYLYTGSSVQPYV 850
            L  V P  G+ + L S+   I  R   F NDLD+  +   VYFTDSS  +QRR +   I      GR+L+YD   K V VM   L FPNG+                 +I R  + G            +P FPDNI+  S G +W+AM++ R                ++      F ++T   +  R  + V+                      SE  EY  +LY GS   PY+
Sbjct:  171 LFEVNPVTGEVKSLVSTEKRIAGRRLGFVNDLDVTQDGKKVYFTDSSSRWQRRDFMHLIMEATADGRVLEYDTETKEVNVMMENLRFPNGIQLFPDEESVLVAETTMARIKRVHVSGLNKGGMDTFIENLPGFPDNIRRSSSGGYWVAMSAVRPNPGFSMLDFLSQRPWLKKLIFKLFSQDTLLKFVPRYSLVVELQSDGTCVRSFHDPQGLVSAYSSEAHEYSGHLYLGSFRSPYL 407          
The following BLAST results are available for this feature:
BLAST of CX070139 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
STS3_ARATH1.196e-2335.09Strictosidine synthase 3 OS=Arabidopsis thaliana G... [more]
STSY_RAUSE5.023e-2230.37Strictosidine synthase OS=Rauvolfia serpentina GN=... [more]
STSY_RAUMA5.023e-2230.37Strictosidine synthase (Fragment) OS=Rauvolfia man... [more]
STS1_ARATH2.333e-1931.20Strictosidine synthase 1 OS=Arabidopsis thaliana G... [more]
APMAP_CHICK1.158e-1829.17Adipocyte plasma membrane-associated protein OS=Ga... [more]
STSY_CATRO1.975e-1836.73Strictosidine synthase OS=Catharanthus roseus GN=S... [more]
APMAP_RAT2.580e-1829.11Adipocyte plasma membrane-associated protein OS=Ra... [more]
APMAP_BOVIN4.400e-1828.69Adipocyte plasma membrane-associated protein OS=Bo... [more]
APMAP_MOUSE1.672e-1727.85Adipocyte plasma membrane-associated protein OS=Mu... [more]
APMAP_DANRE3.725e-1728.27Adipocyte plasma membrane-associated protein OS=Da... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_15A04_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-15A04-B7-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070139 ID=CX070139; Name=CX070139; organism=Citrus sinensis; type=EST; length=850bp
TTTTTTTTTTTTTTTTTATCGAAAGAGATTATCAGAATATTTATATTAAT
ACTTGAAAATCAAACAAAAATATGTATTTAGAGTTTGCTTACTAATTAAT
TAATTTGTGTTTTTAACCAAACAAGAGGGGATGGCAAGACAGAAAATCTT
CTGAGGAAATAGCAAGACTAGACTAGGCCTTTATTACGACAACATAAGGC
TGCACAGAAGATCCCGTGTACAAATATTCACCGTATTCTTGAACTTCACT
GACAGAATTGAGTGTATTTCCTTCGTTTCCATCCAACACATCCACAACAT
TACCATTCACATCAAACTTAACCCCAACAGGGTCTCTTAGAAACCATGGC
TTCGCAGTTTCTTCACAGAAAGCCGTCTTCTTATTGCTTTCAATCTTTCC
CCTCGCAGAGTTCATTGCAATCCAAAATTCTCCCTTGCTGTCACTCTTGA
TGTTGTCAGGAAATCTCGGCATCTCAGCAAAAAGCTGCGGAGTGTATGTA
GTTCTCTCACCTTGAAGCCAAAACCGTAAAATCTTCAGTGTGGCTGACTC
AGCAAGTAGGAGGAACGAGTTATTATTGCTTAGTGCAACACCATTTGGAA
ATGATAAGCCGTTATACATTACTGTCACGTTCTTCTTGAGTGGATCATAT
TTCAATAACCTCCCACTTTTATCTCCGGTAGCAATCGACATAAAATATTG
CCTTCTTTGGAAATAAATGCTGCTGTCGGTAAAATAGACTATCCCTGTGT
TCGGATCGATGTCCAAGTCGTTTGTGAAACGAAAAGGGATTCCTCCGGCT
GAAGAAGCAAGTTGTTGAGCCTGACCACCATTTGGACCGACCACCATCAA
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