CX070098

Overview
NameCX070098
Unique NameCX070098
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length770
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070098 vs. ExPASy Swiss-Prot
Match: TBG1_ARATH (Tubulin gamma-1 chain OS=Arabidopsis thaliana GN=TUBG1 PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.920e-46
Identity = 87/95 (91.58%), Postives = 92/95 (96.84%), Query Frame = -1
Query:  486 MLASHTSIRHLFSKCLSQYEKLRKKQAFLDNYRKFPMFADNDLSEFDESRDIIESLVDEYKACESPDYIKWGMEDPDHILTGEGNATGSVDPNLA 770
            MLASHTSIRHLFSKCLSQY+KLRKKQAFLDNYRKFPMFADNDLSEFDESRDIIESLVDEYKACESPDYIKWGMEDP+ ++TGEGNA+G VDP LA
Sbjct:  379 MLASHTSIRHLFSKCLSQYDKLRKKQAFLDNYRKFPMFADNDLSEFDESRDIIESLVDEYKACESPDYIKWGMEDPEQLMTGEGNASGVVDPKLA 473          
BLAST of CX070098 vs. ExPASy Swiss-Prot
Match: TBG2_ARATH (Tubulin gamma-2 chain OS=Arabidopsis thaliana GN=TUBG2 PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.773e-45
Identity = 85/95 (89.47%), Postives = 90/95 (94.74%), Query Frame = -1
Query:  486 MLASHTSIRHLFSKCLSQYEKLRKKQAFLDNYRKFPMFADNDLSEFDESRDIIESLVDEYKACESPDYIKWGMEDPDHILTGEGNATGSVDPNLA 770
            MLASHTSIRHLFS+CLSQY+KLRKKQAFLDNYRKFPMFADNDLSEFDESRDIIESLVDEYKACESPDYIKWGMEDP  ++TGEGNA+G  DP LA
Sbjct:  379 MLASHTSIRHLFSRCLSQYDKLRKKQAFLDNYRKFPMFADNDLSEFDESRDIIESLVDEYKACESPDYIKWGMEDPGQLMTGEGNASGVADPKLA 473          
BLAST of CX070098 vs. ExPASy Swiss-Prot
Match: TBG_PHYPA (Tubulin gamma chain OS=Physcomitrella patens GN=TUBG1 PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 7.813e-40
Identity = 76/91 (83.52%), Postives = 85/91 (93.41%), Query Frame = -1
Query:  498 MLASHTSIRHLFSKCLSQYEKLRKKQAFLDNYRKFPMFADNDLSEFDESRDIIESLVDEYKACESPDYIKWGMEDPDHILTGEGNATGSVD 770
            MLASHTSIRHLFSKC+SQYEKLRKKQAFLDNYRKFPMFADNDLSEFDESR+I+++LVDEYKACES DYIKWGMED    ++GEGN +G+VD
Sbjct:  379 MLASHTSIRHLFSKCISQYEKLRKKQAFLDNYRKFPMFADNDLSEFDESREIVQNLVDEYKACESADYIKWGMEDRGKQVSGEGNTSGTVD 469          
BLAST of CX070098 vs. ExPASy Swiss-Prot
Match: TBG3_MAIZE (Tubulin gamma-3 chain (Fragment) OS=Zea mays GN=TUBG3 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.741e-39
Identity = 79/96 (82.29%), Postives = 83/96 (86.46%), Query Frame = -1
Query:  483 MLASHTSIRHLFSKCLSQYEKLRKKQAFLDNYRKFPMFADNDLSEFDESRDIIESLVDEYKACESPDYIKWGMEDPDHILTGEGNATGSVDPNLAV 770
            MLA+HTSIRHLFSKCL QYEKLRKKQAFLDNYRKFPMFADNDLSEFDESR+IIESLVDEYKACESPDYIKWGMEDP     GE N   ++D  L V
Sbjct:  331 MLANHTSIRHLFSKCLGQYEKLRKKQAFLDNYRKFPMFADNDLSEFDESREIIESLVDEYKACESPDYIKWGMEDP-----GEANVVAALDSKLVV 421          
BLAST of CX070098 vs. ExPASy Swiss-Prot
Match: TBG1_MAIZE (Tubulin gamma-1 chain OS=Zea mays GN=TUBG1 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.741e-39
Identity = 79/96 (82.29%), Postives = 83/96 (86.46%), Query Frame = -1
Query:  483 MLASHTSIRHLFSKCLSQYEKLRKKQAFLDNYRKFPMFADNDLSEFDESRDIIESLVDEYKACESPDYIKWGMEDPDHILTGEGNATGSVDPNLAV 770
            MLA+HTSIRHLFSKCL QYEKLRKKQAFLDNYRKFPMFADNDLSEFDESR+IIESLVDEYKACESPDYIKWGMEDP     GE N   ++D  L V
Sbjct:  379 MLANHTSIRHLFSKCLGQYEKLRKKQAFLDNYRKFPMFADNDLSEFDESREIIESLVDEYKACESPDYIKWGMEDP-----GEANVVAALDSKLVV 469          
BLAST of CX070098 vs. ExPASy Swiss-Prot
Match: TBG2_MAIZE (Tubulin gamma-2 chain OS=Zea mays GN=TUBG2 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 6.615e-39
Identity = 78/96 (81.25%), Postives = 81/96 (84.38%), Query Frame = -1
Query:  483 MLASHTSIRHLFSKCLSQYEKLRKKQAFLDNYRKFPMFADNDLSEFDESRDIIESLVDEYKACESPDYIKWGMEDPDHILTGEGNATGSVDPNLAV 770
            MLA+HTSIRHLF KCL QYEKLRKKQAFLDNYRKFPMFADNDLSEFDESR+IIESLVDEYKACESPDYIKWGMEDP     GE N    +D  L V
Sbjct:  379 MLANHTSIRHLFGKCLGQYEKLRKKQAFLDNYRKFPMFADNDLSEFDESREIIESLVDEYKACESPDYIKWGMEDP-----GEANVAADLDSKLVV 469          
BLAST of CX070098 vs. ExPASy Swiss-Prot
Match: TBG2_ORYSJ (Tubulin gamma-2 chain OS=Oryza sativa subsp. japonica GN=TUBG2 PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.287e-38
Identity = 77/96 (80.21%), Postives = 81/96 (84.38%), Query Frame = -1
Query:  483 MLASHTSIRHLFSKCLSQYEKLRKKQAFLDNYRKFPMFADNDLSEFDESRDIIESLVDEYKACESPDYIKWGMEDPDHILTGEGNATGSVDPNLAV 770
            MLA+HTSIRHLFSKCL QYEKLRKKQAFLDNYRKFPMF DNDLSEFDESR+IIESLVDEYKACESPDYIKWGMED      GE N   ++D  L V
Sbjct:  379 MLANHTSIRHLFSKCLGQYEKLRKKQAFLDNYRKFPMFEDNDLSEFDESREIIESLVDEYKACESPDYIKWGMED-----AGEANVAAALDSKLVV 469          
BLAST of CX070098 vs. ExPASy Swiss-Prot
Match: TBG_ANEPH (Tubulin gamma chain OS=Anemia phyllitidis GN=TUBG PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.353e-36
Identity = 70/84 (83.33%), Postives = 78/84 (92.86%), Query Frame = -1
Query:  519 MLASHTSIRHLFSKCLSQYEKLRKKQAFLDNYRKFPMFADNDLSEFDESRDIIESLVDEYKACESPDYIKWGMEDPDHILTGEG 770
            MLASHTSIRHLFSKC++QYEKLRKKQAFLDNYRKFPMFADNDL+EFDESR+I++SLVDEYKACES DYIKWGMED    L+ +G
Sbjct:  380 MLASHTSIRHLFSKCINQYEKLRKKQAFLDNYRKFPMFADNDLTEFDESREIVQSLVDEYKACESADYIKWGMEDRSKTLSADG 463          
BLAST of CX070098 vs. ExPASy Swiss-Prot
Match: TBG_COPC7 (Tubulin gamma chain OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=TUB4 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.585e-16
Identity = 40/77 (51.95%), Postives = 56/77 (72.73%), Query Frame = -1
Query:  540 MLASHTSIRHLFSKCLSQYEKLRKKQAFLDNYRKFPMFADNDLSEFDESRDIIESLVDEYKACESPDYIKWGMEDPD 770
            MLA+HTS+  LF + L Q+++LRK+ AF++ Y+K  MFA N L EFD++R   + L+ EYKACESPDY+ +G  D D
Sbjct:  376 MLANHTSVASLFKRMLDQFDRLRKRNAFIEQYKKEKMFA-NGLEEFDDARATCDELLKEYKACESPDYVSFGGPDGD 451          
BLAST of CX070098 vs. ExPASy Swiss-Prot
Match: TBG1_HUMAN (Tubulin gamma-1 chain OS=Homo sapiens GN=TUBG1 PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 2.071e-16
Identity = 39/75 (52.00%), Postives = 53/75 (70.67%), Query Frame = -1
Query:  546 MLASHTSIRHLFSKCLSQYEKLRKKQAFLDNYRKFPMFADNDLSEFDESRDIIESLVDEYKACESPDYIKWGMED 770
            M+A+HTSI  LF +   QY+KLRK++AFL+ +RK  MF DN   E D SR+I++ L+DEY A   PDYI WG ++
Sbjct:  377 MMANHTSISSLFERTCRQYDKLRKREAFLEQFRKEDMFKDN-FDEMDTSREIVQQLIDEYHAATRPDYISWGTQE 450          
The following BLAST results are available for this feature:
BLAST of CX070098 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
TBG1_ARATH1.920e-4691.58Tubulin gamma-1 chain OS=Arabidopsis thaliana GN=T... [more]
TBG2_ARATH2.773e-4589.47Tubulin gamma-2 chain OS=Arabidopsis thaliana GN=T... [more]
TBG_PHYPA7.813e-4083.52Tubulin gamma chain OS=Physcomitrella patens GN=TU... [more]
TBG3_MAIZE1.741e-3982.29Tubulin gamma-3 chain (Fragment) OS=Zea mays GN=TU... [more]
TBG1_MAIZE1.741e-3982.29Tubulin gamma-1 chain OS=Zea mays GN=TUBG1 PE=2 SV... [more]
TBG2_MAIZE6.615e-3981.25Tubulin gamma-2 chain OS=Zea mays GN=TUBG2 PE=2 SV... [more]
TBG2_ORYSJ4.287e-3880.21Tubulin gamma-2 chain OS=Oryza sativa subsp. japon... [more]
TBG_ANEPH2.353e-3683.33Tubulin gamma chain OS=Anemia phyllitidis GN=TUBG ... [more]
TBG_COPC71.585e-1651.95Tubulin gamma chain OS=Coprinopsis cinerea (strain... [more]
TBG1_HUMAN2.071e-1652.00Tubulin gamma-1 chain OS=Homo sapiens GN=TUBG1 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_14G03_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14G03-M6-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070098 ID=CX070098; Name=CX070098; organism=Citrus sinensis; type=EST; length=770bp
TGGTACGCACAATGCACCACATGCTATGTTTTGCTCTAACGAATGACGAC
AATAGGGTACATGGGAAGTATGGTAGCATGACAGAATTTTCTCAAAAATA
TTTAGATGATGCAAAATCCTGACCAAGAATTAAATAATACATCAATAGAA
TAAGGAAAACGAGAAACATATCAGCCATCAGTTGTAAGAAGAGGTCAATC
CACGCCAGAAATTTTGAAATTCTGGCTCCAGCTGTGCTGCCTGGATTTCT
TTAGATTTTAGGGGAAAACAAAGGCAATCTGATGAAAACAGTGACATTCT
GCATTTCTCAGACTTGGGTATCAATAAATATCAGTTGAAACAAAAACACC
CAAAACTTGAATGCACTATAAATCACTCAACGTTCCACACAACAGGAACA
ACTTCAAATACAAACACCCATGTTTAATTACAATTCTCCTTCCAGCATGC
TTTCACCAAAAGGCTACATCCTGGTTTATTCACACTGCTAAGTTTGGATC
CACTGATCCAGTGGCATTGCCTTCTCCTGTTAGAATGTGGTCAGGATCCT
CCATTCCCCATTTGATGTAATCTGGGGATTCACAAGCCTTATATTCATCA
ACCAAGCTCTCAATTATGTCCCTTGATTCATCAAATTCTGAAAGATCATT
GTCAGCAAACATTGGAAACTTTCGGTAGTTGTCAAGAAAGGCTTGCTTTT
TTCGCAACTTCTCATATTGGCTCAAACATTTGCTGAAGAGATGCCTGATA
CTAGTATGGCTTGCCAGCAT
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