CX070086

Overview
NameCX070086
Unique NameCX070086
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length595
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX070086 vs. ExPASy Swiss-Prot
Match: PSBN_WHEAT (Protein psbN OS=Triticum aestivum GN=psbN PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.855e-15
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = -1 
Query:  422 METATLVAISISGLLVSFTGYALYTAFGQPSQQVRDPXEEHG 547
            METATLVAISISGLLVSFTGYALYTAFGQPSQQ+RDP EEHG
Sbjct:    1 METATLVAISISGLLVSFTGYALYTAFGQPSQQLRDPFEEHG 42
[Close]
BLAST of CX070086 vs. ExPASy Swiss-Prot
Match: PSBN_VITVI (Protein psbN OS=Vitis vinifera GN=psbN PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.855e-15
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = -1 
Query:  422 METATLVAISISGLLVSFTGYALYTAFGQPSQQVRDPXEEHG 547
            METATLVAISISGLLVSFTGYALYTAFGQPSQQ+RDP EEHG
Sbjct:    1 METATLVAISISGLLVSFTGYALYTAFGQPSQQLRDPFEEHG 42
[Close]
BLAST of CX070086 vs. ExPASy Swiss-Prot
Match: PSBN_TYPAN (Protein psbN OS=Typha angustifolia GN=psbN PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.855e-15
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = -1 
Query:  422 METATLVAISISGLLVSFTGYALYTAFGQPSQQVRDPXEEHG 547
            METATLVAISISGLLVSFTGYALYTAFGQPSQQ+RDP EEHG
Sbjct:    1 METATLVAISISGLLVSFTGYALYTAFGQPSQQLRDPFEEHG 42
[Close]
BLAST of CX070086 vs. ExPASy Swiss-Prot
Match: PSBN_SPAWA (Protein psbN OS=Spathiphyllum wallisii GN=psbN PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.855e-15
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = -1 
Query:  422 METATLVAISISGLLVSFTGYALYTAFGQPSQQVRDPXEEHG 547
            METATLVAISISGLLVSFTGYALYTAFGQPSQQ+RDP EEHG
Sbjct:    1 METATLVAISISGLLVSFTGYALYTAFGQPSQQLRDPFEEHG 42
[Close]
BLAST of CX070086 vs. ExPASy Swiss-Prot
Match: PSBN_SORBI (Protein psbN OS=Sorghum bicolor GN=psbN PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.855e-15
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = -1 
Query:  422 METATLVAISISGLLVSFTGYALYTAFGQPSQQVRDPXEEHG 547
            METATLVAISISGLLVSFTGYALYTAFGQPSQQ+RDP EEHG
Sbjct:    1 METATLVAISISGLLVSFTGYALYTAFGQPSQQLRDPFEEHG 42
[Close]
BLAST of CX070086 vs. ExPASy Swiss-Prot
Match: PSBN_SECCE (Protein psbN OS=Secale cereale GN=psbN PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.855e-15
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = -1 
Query:  422 METATLVAISISGLLVSFTGYALYTAFGQPSQQVRDPXEEHG 547
            METATLVAISISGLLVSFTGYALYTAFGQPSQQ+RDP EEHG
Sbjct:    1 METATLVAISISGLLVSFTGYALYTAFGQPSQQLRDPFEEHG 42
[Close]
BLAST of CX070086 vs. ExPASy Swiss-Prot
Match: PSBN_SAUCE (Protein psbN OS=Saururus cernuus GN=psbN PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.855e-15
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = -1 
Query:  422 METATLVAISISGLLVSFTGYALYTAFGQPSQQVRDPXEEHG 547
            METATLVAISISGLLVSFTGYALYTAFGQPSQQ+RDP EEHG
Sbjct:    1 METATLVAISISGLLVSFTGYALYTAFGQPSQQLRDPFEEHG 42
[Close]
BLAST of CX070086 vs. ExPASy Swiss-Prot
Match: PSBN_SACOF (Protein psbN OS=Saccharum officinarum GN=psbN PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.855e-15
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = -1 
Query:  422 METATLVAISISGLLVSFTGYALYTAFGQPSQQVRDPXEEHG 547
            METATLVAISISGLLVSFTGYALYTAFGQPSQQ+RDP EEHG
Sbjct:    1 METATLVAISISGLLVSFTGYALYTAFGQPSQQLRDPFEEHG 42
[Close]
BLAST of CX070086 vs. ExPASy Swiss-Prot
Match: PSBN_SACHY (Protein psbN OS=Saccharum hybrid GN=psbN PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.855e-15
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = -1 
Query:  422 METATLVAISISGLLVSFTGYALYTAFGQPSQQVRDPXEEHG 547
            METATLVAISISGLLVSFTGYALYTAFGQPSQQ+RDP EEHG
Sbjct:    1 METATLVAISISGLLVSFTGYALYTAFGQPSQQLRDPFEEHG 42
[Close]
BLAST of CX070086 vs. ExPASy Swiss-Prot
Match: PSBN_POPTR (Protein psbN OS=Populus trichocarpa GN=psbN PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.855e-15
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = -1 
Query:  422 METATLVAISISGLLVSFTGYALYTAFGQPSQQVRDPXEEHG 547
            METATLVAISISGLLVSFTGYALYTAFGQPSQQ+RDP EEHG
Sbjct:    1 METATLVAISISGLLVSFTGYALYTAFGQPSQQLRDPFEEHG 42
The following BLAST results are available for this feature:
BLAST of CX070086 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 160
Match NameE-valueIdentityDescription
PSBN_WHEAT1.855e-1595.24Protein psbN OS=Triticum aestivum GN=psbN PE=3 SV=... [more]
PSBN_VITVI1.855e-1595.24Protein psbN OS=Vitis vinifera GN=psbN PE=3 SV=1[more]
PSBN_TYPAN1.855e-1595.24Protein psbN OS=Typha angustifolia GN=psbN PE=3 SV... [more]
PSBN_SPAWA1.855e-1595.24Protein psbN OS=Spathiphyllum wallisii GN=psbN PE=... [more]
PSBN_SORBI1.855e-1595.24Protein psbN OS=Sorghum bicolor GN=psbN PE=3 SV=1[more]
PSBN_SECCE1.855e-1595.24Protein psbN OS=Secale cereale GN=psbN PE=3 SV=1[more]
PSBN_SAUCE1.855e-1595.24Protein psbN OS=Saururus cernuus GN=psbN PE=3 SV=1[more]
PSBN_SACOF1.855e-1595.24Protein psbN OS=Saccharum officinarum GN=psbN PE=3... [more]
PSBN_SACHY1.855e-1595.24Protein psbN OS=Saccharum hybrid GN=psbN PE=3 SV=1[more]
PSBN_POPTR1.855e-1595.24Protein psbN OS=Populus trichocarpa GN=psbN PE=3 S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_14F09_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14F09-K18-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070086 ID=CX070086; Name=CX070086; organism=Citrus sinensis; type=EST; length=595bp
CAAAAACTTGGAGATCCAACTACAAGAAGACAAGTAGTCTGATGCAGCAT
TGCTCTACTATTTTAGTTTCTCACTTCTGCTTCTATTTTCGATTTGTGCT
TTTTATTTAAAATAAGGTATAAGGTACTGGAGAAATATGGATTTAAATCG
CCGCCCTTTTTGATTCTTTTTTTCTTTAATCCGGGGGATGATCCCAAATA
AACAGGTATGGAAGCTATAATTGGAAACCACGATCGAATTTATGGAAGCA
TTGGTTTATACATTCCTCTTAGTCTCGACTCTAGGGATCATTTTTTTCGC
TATCTTTTTTCGAGAACCGCCTAAAGTTCCAACTAAAAAAACAAAATGAT
TTTTTTTTATCTCAATGAAAGTAATGGGCCTCCCNNNATTGNNAGGCCCA
TTACTTCTACTTCAACTANTCCCCGTGTTCCTCNAATGGATCTCTTACTT
GTTGAGAGGGTTGCCCAAAAGCAGTATATAAGGCGTACCCAGTAAAACTT
ACAAGTAACCCAGATATAGAGATGGCGACTAGGGTTGCTGTTTCCATTAT
TATAGAATTTCAAGACCACACTGGATCCATGATAAGATCGTTTAT
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