CX070083

Overview
NameCX070083
Unique NameCX070083
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length854
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070083 vs. ExPASy Swiss-Prot
Match: ILVH_SYNY3 (Acetolactate synthase small subunit OS=Synechocystis sp. (strain PCC 6803) GN=ilvH PE=3 SV=2)

HSP 1 Score: 183.726 bits (465), Expect = 1.118e-45
Identity = 89/164 (54.27%), Postives = 128/164 (78.05%), Query Frame = -2
Query:  161 HTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDLTHLPFAERELMLIKVAVNTTARRDVLDIATIFRAKAVDVSDHTITLELTGDLDKMVALQRLLEPYGICEVARTGRVALVRESGVDSKYLR 652
            HTLS+LV D  GVL  + G+FARRG+NI+SLAVG AE   +SRIT VVP  + +I +L +QLYKL+++ +V+D+T  P  ERELML+KV+ N   R +V+++A +FRA+ VD+S+ T+T+E+ GD  KMVA+ ++L  +GI EVARTG++ALVRESGV+++YL+
Sbjct:    3 HTLSVLVEDEAGVLTRIAGLFARRGFNIESLAVGSAEQGDVSRITMVVPGDENTIEQLTKQLYKLVNVIKVQDITETPCVERELMLVKVSANAPNRAEVIELAQVFRARIVDISEDTVTIEVVGDPGKMVAILQMLAKFGIKEVARTGKIALVRESGVNTEYLK 166          
BLAST of CX070083 vs. ExPASy Swiss-Prot
Match: ILVH_GALSU (Acetolactate synthase small subunit OS=Galdieria sulphuraria GN=ilvH PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.697e-44
Identity = 86/164 (52.44%), Postives = 124/164 (75.61%), Query Frame = -2
Query:  161 HTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDLTHLPFAERELMLIKVAVNTTARRDVLDIATIFRAKAVDVSDHTITLELTGDLDKMVALQRLLEPYGICEVARTGRVALVRESGVDSKYLR 652
            HTLS+LV D  GVL  ++G+FARRG+NI SLAVG AE  G+SRIT V+   +  I ++ + LYKL+++ +++D+T++P  ERELMLIKV      R ++L+IA IFRA+ VD+S+  I LE+TGD  K+ A+++LLE YGICE+ARTG++AL RES ++++ LR
Sbjct:    3 HTLSVLVEDESGVLTRISGLFARRGFNIDSLAVGPAEKAGISRITMVIRGDNRIIEQITKHLYKLVNVLKIQDITNIPCVERELMLIKVKTGENKRNEILEIANIFRARVVDLSESFIILEITGDPGKIAAIEKLLEKYGICEIARTGKIALTRESKINTEILR 166          
BLAST of CX070083 vs. ExPASy Swiss-Prot
Match: ILVH_CYACA (Acetolactate synthase small subunit OS=Cyanidium caldarium GN=ilvH PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 8.012e-44
Identity = 84/170 (49.41%), Postives = 130/170 (76.47%), Query Frame = -2
Query:  143 HTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDLTHLPFAERELMLIKVAVNTTARRDVLDIATIFRAKAVDVSDHTITLELTGDLDKMVALQRLLEPYGICEVARTGRVALVRESGVDSKYLRGYSFPL 652
            +TLS+LV D  GVL  + G+FARRG+NI+SLAVG AE +G+SRIT VVP  D ++ +L +QLYKL+++ +V ++T +P  EREL+L+K+  +T++R ++L I  +FRAK VD+S++ + LELTGD  K+ A+Q+LL+ +GI E+ARTG++AL R S V++++L+  S  +
Sbjct:    3 YTLSVLVEDEAGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPGDDRTVEQLTKQLYKLVNILKVDNITEIPCVERELILVKINASTSSRPEILSILQVFRAKVVDLSENLLVLELTGDPGKVAAIQQLLQKFGIIEIARTGKIALTRTSKVNTEFLKSISMEI 172          
BLAST of CX070083 vs. ExPASy Swiss-Prot
Match: ILVH_PORYE (Acetolactate synthase small subunit OS=Porphyra yezoensis GN=ilvH PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.157e-42
Identity = 84/164 (51.22%), Postives = 126/164 (76.83%), Query Frame = -2
Query:  161 HTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDLTHLPFAERELMLIKVAVNTTARRDVLDIATIFRAKAVDVSDHTITLELTGDLDKMVALQRLLEPYGICEVARTGRVALVRESGVDSKYLR 652
            HTLS+LV D  GVL+ ++G+FARRG+NI SLAVG AE  G+SRIT VV   + +I +L +QLYKL+++  V+D+T++P  ERELMLIK+ +N+  R + L+I  IFRAK VD+++  + +E+TGD  K+VA+++LL  +GI E+ARTG++ LVR S ++++YL+
Sbjct:    3 HTLSVLVQDEAGVLSRISGLFARRGFNIASLAVGPAEQIGVSRITMVVQGDNRTIEQLTKQLYKLVNILNVQDVTNIPSVERELMLIKIQINSQTRTEALEIVRIFRAKIVDIAEDLLIIEVTGDPGKIVAIEQLLTKFGIIEIARTGKILLVRTSKINTEYLK 166          
BLAST of CX070083 vs. ExPASy Swiss-Prot
Match: ILVH_GUITH (Acetolactate synthase small subunit OS=Guillardia theta GN=ilvH PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.157e-42
Identity = 86/163 (52.76%), Postives = 124/163 (76.07%), Query Frame = -2
Query:  164 HTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDLTHLPFAERELMLIKVAVNTTARRDVLDIATIFRAKAVDVSDHTITLELTGDLDKMVALQRLLEPYGICEVARTGRVALVRESGVDSKYL 652
            HTLS+LV D  GVL  + G+FARRG+NI+SLAVG  E  G+SRIT VVP+ + +I +L +QLYKL+++ +V D+T+LP  ERELMLIK+ V+T  R + LDI  IFRAK VD+S+  + +E+TGD  K+VA++++L  + I E+ RTG+++LVRES V+++ L
Sbjct:    3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPTEKLGISRITMVVPSDERTIEQLTKQLYKLVNILKVEDITNLPTVERELMLIKLRVSTFERTEALDIINIFRAKVVDLSEDFLIIEVTGDPGKIVAIEQILSKFTISEIVRTGKISLVRESNVNTRSL 165          
BLAST of CX070083 vs. ExPASy Swiss-Prot
Match: ILVH_PORPU (Acetolactate synthase small subunit OS=Porphyra purpurea GN=ilvH PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 3.366e-42
Identity = 85/164 (51.83%), Postives = 126/164 (76.83%), Query Frame = -2
Query:  161 HTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDLTHLPFAERELMLIKVAVNTTARRDVLDIATIFRAKAVDVSDHTITLELTGDLDKMVALQRLLEPYGICEVARTGRVALVRESGVDSKYLR 652
            HTLS+LV D  GVL+ ++G+FARRG+NI SLAVG AE  G+SRIT VV   + +I +L +QLYKL+++  V+D+T++P  ERELMLIK+ VN+  R + L+I  IFRA  VD+++  I +E+TGD  K+VA+++LL  +GI E+ARTG+++LVR S ++++YL+
Sbjct:    3 HTLSVLVQDEAGVLSRISGLFARRGFNIASLAVGPAEQIGVSRITMVVQGDNRTIEQLTKQLYKLVNILNVQDVTNIPSVERELMLIKIQVNSQNRIEALEIVKIFRANVVDIAEDLIIVEVTGDPGKIVAIEQLLTKFGIIEIARTGKISLVRTSKINTEYLK 166          
BLAST of CX070083 vs. ExPASy Swiss-Prot
Match: ILVH_AQUAE (Acetolactate synthase small subunit OS=Aquifex aeolicus GN=ilvH PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.955e-31
Identity = 75/162 (46.30%), Postives = 108/162 (66.67%), Query Frame = -2
Query:  179 LRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDLTHLPFAERELMLIKV-AVNTTARRDVLDIATIFRAKAVDVSDHTITLELTGDLDKMVALQRLLEPYGICEVARTGRVALVRESGV 661
            +R H +++ V +  GVL  +  + A +GYNI+ L+VG    +G+SR+T  V   D  I ++++QL +LID  +V DLT +P  EREL LIKV   ++ AR +VL I  IFR K VDVS  T T+E+TGD DK+ A+  LL+P+GI E+ARTG+VA+ RE  +
Sbjct:   25 VRKHIITVKVRNEMGVLARIATLIAGKGYNIEGLSVGETHEKGISRMTIEVIGDDIVIEQVVKQLRRLIDTLKVSDLTDVPHVERELALIKVYTPSSRARDEVLRITEIFRGKVVDVSPDTYTIEVTGDEDKINAMIELLKPFGIKEMARTGKVAMRREMSI 186          
BLAST of CX070083 vs. ExPASy Swiss-Prot
Match: ILVH_MYCLE (Acetolactate synthase small subunit OS=Mycobacterium leprae GN=ilvH PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.733e-30
Identity = 71/158 (44.94%), Postives = 107/158 (67.72%), Query Frame = -2
Query:  191 GLRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDLTHLPFAERELMLIKVAVNTTARRDVLDIATIFRAKAVDVSDHTITLELTGDLDKMVALQRLLEPYGICEVARTGRVALVR 664
            GL +HTLS+LV D+PGVL  V  +F+RRG+NI+SLAVG  E + +SR+T VV A +  + ++ +QL+KLI++ +V +        REL LIKV      R  V++   +FRA+ +DVS  ++T+E TGD  K+ AL R+LEP+G+ E+ ++G V+L R
Sbjct:    3 GLPTHTLSVLVEDTPGVLARVAALFSRRGFNIESLAVGATECKTMSRMTIVVSAEETPLEQVTKQLHKLINVIKVVEQEADNSLSRELALIKVRAEAGTRSQVIEAVHLFRARVIDVSLESLTVEATGDCSKIEALLRVLEPFGVREIVQSGVVSLSR 160          
BLAST of CX070083 vs. ExPASy Swiss-Prot
Match: ILVH_MYCTU (Acetolactate synthase small subunit OS=Mycobacterium tuberculosis GN=ilvH PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.263e-30
Identity = 70/156 (44.87%), Postives = 105/156 (67.31%), Query Frame = -2
Query:  191 RSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDLTHLPFAERELMLIKVAVNTTARRDVLDIATIFRAKAVDVSDHTITLELTGDLDKMVALQRLLEPYGICEVARTGRVALVR 658
            ++HTLS+LV D PGVL  V  +F+RRG+NI+SLAVG  E +  SR+T VV A D  + ++ +QL KLI++ ++ +        REL LIKV  +  +R  V++   +FRA  +DVS  ++T+E TG+  K+ AL R+LEP+GI E+A++G V+L R
Sbjct:    4 KTHTLSVLVEDKPGVLARVAALFSRRGFNIESLAVGATECKDRSRMTIVVSAEDTPLEQITKQLNKLINVIKIVEQDDEHSVSRELALIKVQADAGSRSQVIEAVNLFRANVIDVSPESLTVEATGNRGKLEALLRVLEPFGIREIAQSGMVSLSR 159          
BLAST of CX070083 vs. ExPASy Swiss-Prot
Match: ILVH_MYCBO (Acetolactate synthase small subunit OS=Mycobacterium bovis GN=ilvH PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.263e-30
Identity = 70/156 (44.87%), Postives = 105/156 (67.31%), Query Frame = -2
Query:  191 RSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDLTHLPFAERELMLIKVAVNTTARRDVLDIATIFRAKAVDVSDHTITLELTGDLDKMVALQRLLEPYGICEVARTGRVALVR 658
            ++HTLS+LV D PGVL  V  +F+RRG+NI+SLAVG  E +  SR+T VV A D  + ++ +QL KLI++ ++ +        REL LIKV  +  +R  V++   +FRA  +DVS  ++T+E TG+  K+ AL R+LEP+GI E+A++G V+L R
Sbjct:    4 KTHTLSVLVEDKPGVLARVAALFSRRGFNIESLAVGATECKDRSRMTIVVSAEDTPLEQITKQLNKLINVIKIVEQDDEHSVSRELALIKVQADAGSRSQVIEAVNLFRANVIDVSPESLTVEATGNRGKLEALLRVLEPFGIREIAQSGMVSLSR 159          
The following BLAST results are available for this feature:
BLAST of CX070083 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
ILVH_SYNY31.118e-4554.27Acetolactate synthase small subunit OS=Synechocyst... [more]
ILVH_GALSU4.697e-4452.44Acetolactate synthase small subunit OS=Galdieria s... [more]
ILVH_CYACA8.012e-4449.41Acetolactate synthase small subunit OS=Cyanidium c... [more]
ILVH_PORYE1.157e-4251.22Acetolactate synthase small subunit OS=Porphyra ye... [more]
ILVH_GUITH1.157e-4252.76Acetolactate synthase small subunit OS=Guillardia ... [more]
ILVH_PORPU3.366e-4251.83Acetolactate synthase small subunit OS=Porphyra pu... [more]
ILVH_AQUAE5.955e-3146.30Acetolactate synthase small subunit OS=Aquifex aeo... [more]
ILVH_MYCLE1.733e-3044.94Acetolactate synthase small subunit OS=Mycobacteri... [more]
ILVH_MYCTU2.263e-3044.87Acetolactate synthase small subunit OS=Mycobacteri... [more]
ILVH_MYCBO2.263e-3044.87Acetolactate synthase small subunit OS=Mycobacteri... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_14F08_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14F08-K16-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070083 ID=CX070083; Name=CX070083; organism=Citrus sinensis; type=EST; length=854bp
TTTTTGGAAGTGCAACCCTTTGTGTGTGGGGGGGTGGGGTTAAAAAAACA
ATATCTCTGCTAAATTGCAAGCTACAAAATTTCCTTTCTGTGAACCGGCA
AAGCATAAATAACTAATTGATTTGCTACAAGTCTCCGAATTACAAAGGAA
ATGAATATCCACGAAGATACTTGGAATCCACGCCTGATTCACGAACCAAT
GCTACTCGACCGGTTCGTGCCACCTCGCAAATTCCATAAGGCTCTAACAG
TCTCTGCAGTGCAACCATCTTGTCCAAATCTCCTGTAAGCTCAAGAGTAA
TCGTGTGATCGGATACATCAACTGCTTTGGCCCTAAATATGGTGGCAATG
TCAAGAACATCTCTTCGAGCAGTGGTATTTACAGCAACCTTTATCAACAT
CAATTCTCGTTCAGCAAATGGCAAATGAGTAAGATCCCGAACCTCATGTA
GATCTATTAGCTTATAAAGTTGCTGCATCAACTTGCTAATTGATTCATCT
GTAGCGGGAACAACTGTTGTAATTCGTGAGAGCCCCTCAGTTTCTGCATG
TCCAACAGCCAAACTCTGAATGTTATAGCCCCTTCGAGCAAAAACCCCTG
TAACAATGTTAAGAACTCCTGGAGAGTCATTCACAAGCATGGATAAAGTA
TGTGATCGAAGTCCACTTGTATCATCATCATTTAGAACACCCCAGTGCGG
ATCAAGAACTTGATTTACAGTCAAGCCATCAGATGGTTCAACCGGATAAA
CATCTCCCTCTACGGTATCAGTTTCACTGAGAAGTGGTCTATGTCCTGCC
CCAACGAGGCCGTCAATAGTAGGCGTTTCATTAAGATCTGGATATGAAGC
TGCT
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