CX070074

Overview
NameCX070074
Unique NameCX070074
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length793
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070074 vs. ExPASy Swiss-Prot
Match: LSM7_HUMAN (U6 snRNA-associated Sm-like protein LSm7 OS=Homo sapiens GN=LSM7 PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.072e-27
Identity = 55/100 (55.00%), Postives = 76/100 (76.00%), Query Frame = -3
Query:  210 KMSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLIVCRGTAVMLVSPTDGTDEIANPFMQPDGA 509
            K   +KE++LDL+K++DK ++VK  GGR+ +G LKG+D LLNLVLD  +E++RD DD  K T+ TRQLGL+VCRGT+V+L+ P DG + I NPF+Q   A
Sbjct:    4 KEKKKKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGLVVCRGTSVVLICPQDGMEAIPNPFIQQQDA 103          
BLAST of CX070074 vs. ExPASy Swiss-Prot
Match: LSM7_MOUSE (U6 snRNA-associated Sm-like protein LSm7 OS=Mus musculus GN=Lsm7 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 6.028e-27
Identity = 54/96 (56.25%), Postives = 75/96 (78.12%), Query Frame = -3
Query:  222 KMSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLIVCRGTAVMLVSPTDGTDEIANPFMQ 509
            K   +KE++LDL+K++DK ++VK  GGR+ +G LKG+D LLNLVLD  +E++RD DD  K T+ TRQLGL+VCRGT+V+L+ P DG + I NPF+Q
Sbjct:    4 KEKKKKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTMEYMRDPDDQYKLTEDTRQLGLVVCRGTSVVLICPQDGMEAIPNPFVQ 99          
BLAST of CX070074 vs. ExPASy Swiss-Prot
Match: LSM7_DICDI (Probable U6 snRNA-associated Sm-like protein LSm7 OS=Dictyostelium discoideum GN=lsm7 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.291e-26
Identity = 54/90 (60.00%), Postives = 73/90 (81.11%), Query Frame = -3
Query:  228 RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLIVCRGTAVMLVSPTDGTDEIANPF 497
            +KE++LDL KF+ K + VK TGGR+V G LKGYDQL+N+ LD+  EF+RDA+DPL TTD+ R LGL+VCRG++VM+V PT+G + I NP+
Sbjct:    8 KKESILDLQKFLGKEICVKFTGGREVQGILKGYDQLVNITLDQTQEFIRDAEDPLITTDEKRFLGLVVCRGSSVMMVCPTEGCEPIDNPY 97          
BLAST of CX070074 vs. ExPASy Swiss-Prot
Match: AB3C_ARATH (ABC transporter C family member 3 OS=Arabidopsis thaliana GN=ABCC3 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 8.202e-24
Identity = 52/70 (74.29%), Postives = 59/70 (84.29%), Query Frame = -2
Query:  520 QQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIAGAMEWL 729
            Q+YYI + RELSRL+GVCKAP+IQ FSETISG+TTIRS  QE RFR  NM+L D YSRPKF+ AGAMEWL
Sbjct: 1105 QRYYIAAARELSRLVGVCKAPLIQHFSETISGATTIRSFSQEFRFRSDNMRLSDGYSRPKFYTAGAMEWL 1174          
BLAST of CX070074 vs. ExPASy Swiss-Prot
Match: LSM7_SCHPO (U6 snRNA-associated Sm-like protein LSm7 OS=Schizosaccharomyces pombe GN=lsm7 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.176e-22
Identity = 50/94 (53.19%), Postives = 73/94 (77.66%), Query Frame = -3
Query:  216 RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLIVCRGTAVMLVSPTDGTDEIANPFMQPD 497
            RKE++LDL+++ D+ +Q   TGGRQ+TG LKG+DQL+NLVLD+  E LR+ +D  K T   R+LGL+V RGT ++L++P DG++EI NPF+Q +
Sbjct:   21 RKESILDLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDG-KLTGAIRKLGLVVVRGTTLVLIAPMDGSEEIPNPFVQAE 113          
BLAST of CX070074 vs. ExPASy Swiss-Prot
Match: AB6C_ARATH (ABC transporter C family member 6 OS=Arabidopsis thaliana GN=ABCC6 PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 3.943e-18
Identity = 44/70 (62.86%), Postives = 54/70 (77.14%), Query Frame = -2
Query:  520 QQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIAGAMEWL 729
            +QYYI++ REL+RL G+ ++PV+  FSET+SG TTIRS DQE RFR   M+L D YSR KFH  GAMEWL
Sbjct: 1055 RQYYISAARELARLAGISRSPVVHHFSETLSGITTIRSFDQEPRFRGDIMRLSDCYSRLKFHSTGAMEWL 1124          
BLAST of CX070074 vs. ExPASy Swiss-Prot
Match: AB7C_ARATH (ABC transporter C family member 7 OS=Arabidopsis thaliana GN=ABCC7 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.359e-17
Identity = 42/70 (60.00%), Postives = 54/70 (77.14%), Query Frame = -2
Query:  520 QQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIAGAMEWL 729
            +QYYI++ REL+RL G+ ++P++Q FSET+SG TTIRS DQE RFR   M+L D YSR +FH   AMEWL
Sbjct: 1077 RQYYISAARELARLSGISRSPLVQHFSETLSGITTIRSFDQEPRFRTDIMRLNDCYSRLRFHAISAMEWL 1146          
BLAST of CX070074 vs. ExPASy Swiss-Prot
Match: LSM7_YEAST (U6 snRNA-associated Sm-like protein LSm7 OS=Saccharomyces cerevisiae GN=LSM7 PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 3.666e-16
Identity = 42/87 (48.28%), Postives = 61/87 (70.11%), Query Frame = -3
Query:  246 RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKT---TDQTRQLGLIVCRGTAVMLVSPTDGTD 497
            ++E +LDLAK+ D  ++VKL GG+ V G LKGYDQL+NLVLD+ VE++ + DD   T   +   R+LGL V RGT ++ +S  +G+D
Sbjct:   23 KREAILDLAKYKDSKIRVKLMGGKLVIGVLKGYDQLMNLVLDDTVEYMSNPDDENNTELISKNARKLGLTVIRGTILVSLSSAEGSD 109          
BLAST of CX070074 vs. ExPASy Swiss-Prot
Match: AB9C_ARATH (ABC transporter C family member 9 OS=Arabidopsis thaliana GN=ABCC9 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.690e-16
Identity = 38/70 (54.29%), Postives = 54/70 (77.14%), Query Frame = -2
Query:  520 QQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIAGAMEWL 729
            Q+YY  + RELSR+ GV +AP++  F+E+++G+TTIR+ DQ  RF  +N+ LID +SRP FH+A AMEWL
Sbjct: 1075 QRYYTPTARELSRMSGVERAPILHHFAESLAGATTIRAFDQRDRFISSNLVLIDSHSRPWFHVASAMEWL 1144          
BLAST of CX070074 vs. ExPASy Swiss-Prot
Match: AB15C_ARATH (Putative ABC transporter C family member 15 OS=Arabidopsis thaliana GN=ABCC15 PE=5 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.820e-16
Identity = 38/70 (54.29%), Postives = 54/70 (77.14%), Query Frame = -2
Query:  520 QQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIAGAMEWL 729
            Q+YY  + RELSR+ GV +AP++  F+E+++G+TTIR+ DQ  RF  +N+ LID +SRP FH+A AMEWL
Sbjct:  622 QRYYTPTERELSRMSGVERAPILHHFAESLAGATTIRAFDQRDRFISSNLVLIDSHSRPWFHVASAMEWL 691          
The following BLAST results are available for this feature:
BLAST of CX070074 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
LSM7_HUMAN2.072e-2755.00U6 snRNA-associated Sm-like protein LSm7 OS=Homo s... [more]
LSM7_MOUSE6.028e-2756.25U6 snRNA-associated Sm-like protein LSm7 OS=Mus mu... [more]
LSM7_DICDI2.291e-2660.00Probable U6 snRNA-associated Sm-like protein LSm7 ... [more]
AB3C_ARATH8.202e-2474.29ABC transporter C family member 3 OS=Arabidopsis t... [more]
LSM7_SCHPO1.176e-2253.19U6 snRNA-associated Sm-like protein LSm7 OS=Schizo... [more]
AB6C_ARATH3.943e-1862.86ABC transporter C family member 6 OS=Arabidopsis t... [more]
AB7C_ARATH4.359e-1760.00ABC transporter C family member 7 OS=Arabidopsis t... [more]
LSM7_YEAST3.666e-1648.28U6 snRNA-associated Sm-like protein LSm7 OS=Saccha... [more]
AB9C_ARATH3.690e-1654.29ABC transporter C family member 9 OS=Arabidopsis t... [more]
AB15C_ARATH4.820e-1654.29Putative ABC transporter C family member 15 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_14F03_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14F03-K6-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070074 ID=CX070074; Name=CX070074; organism=Citrus sinensis; type=EST; length=793bp
CACATTTCAACTTAAGCACAAAGAGGTTACAGATTTACTGCTTAAATTCA
TACAATAGAAAGATTCACGGGCTAAGAGTAGACTAAAACAAACTTCATAA
GAAATTATCTATTTTGCAATAAGGCATTTGTAAAGAAGAATGACCGGCAG
GCAACAAAAGGGCATACAGATCCAGGTTAGCAATTTCAAAAGAGAAACAA
GACACATCAGGCTCCATCTGGCTGCATGAAAGGGTTGGCAATCTCATCTG
TACCATCAGTTGGTGACACAAGCATCACAGCAGTTCCCCTACATACTATT
AGGCCAAGTTGCCTGGTCTGATCAGTAGTCTTCAATGGATCATCAGCATC
TCTTAGAAACTCTACAGCTTCATCCAGGACAAGATTTAGCAACTGATCAT
ACCCTTTTAGAGTCCCGGTCACTTGTCTACCACCAGTGAGCTTCACTTGA
ACACCTTTGTCTACAAACTTTGCCAAATCCAGAACTGTTTCTTTTCTTCC
TGACATCTTGAGTGATTTCAAGCCATTCCATGGCACCAGCAATATGGAAT
TTTGGCCGAGAATATTCATCAATCAGTTTCATATTTGTGTCTCGAAACCT
CAATTCTTGATCAAGGCTCCTGATAGTTGTTGACCCTGAAATTGTTTCGG
AAAACTGTTGTATCACTGGAGCTTTGCATACTCCAATCAACCGCGAAAGC
TCCCGAGTTGAAGTTATGTAATATTGCTGCACAAACTTAAAATTGTGAGA
TATCTTCTATTCAGTAACAGTAAATTTGTAAGCATGTTTTACA
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