CX070068
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX070068 vs. ExPASy Swiss-Prot
Match: LSM4_TOBAC (Probable U6 snRNA-associated Sm-like protein LSm4 OS=Nicotiana tabacum PE=2 SV=1) HSP 1 Score: 194.897 bits (494), Expect = 4.116e-49 Identity = 89/92 (96.74%), Postives = 91/92 (98.91%), Query Frame = 2 Query: 191 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRSDRKPP 466 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY+RGNTIKYLRVPDEVIDKVQEE KSR+DRKPP Sbjct: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYVRGNTIKYLRVPDEVIDKVQEEAKSRTDRKPP 92
BLAST of CX070068 vs. ExPASy Swiss-Prot
Match: LSM4_FAGSY (Probable U6 snRNA-associated Sm-like protein LSm4 OS=Fagus sylvatica GN=LSM4 PE=2 SV=1) HSP 1 Score: 194.126 bits (492), Expect = 7.021e-49 Identity = 89/92 (96.74%), Postives = 92/92 (100.00%), Query Frame = 2 Query: 191 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRSDRKPP 466 MLPLSLLKTAQGHPMLVELK+GETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMP+CYIRGNTIKYLRVPDEVIDKVQEETKSR+DRKPP Sbjct: 1 MLPLSLLKTAQGHPMLVELKSGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPDCYIRGNTIKYLRVPDEVIDKVQEETKSRADRKPP 92
BLAST of CX070068 vs. ExPASy Swiss-Prot
Match: LSM4_ORYSJ (Probable U6 snRNA-associated Sm-like protein LSm4 OS=Oryza sativa subsp. japonica GN=Os01g0256900 PE=2 SV=1) HSP 1 Score: 191.43 bits (485), Expect = 4.551e-48 Identity = 90/93 (96.77%), Postives = 92/93 (98.92%), Query Frame = 2 Query: 191 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEET-KSRSDRKPP 466 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGD+FWRMPECYIRGNTIKYLRVPDEVIDKVQEET KSRSDR+PP Sbjct: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYIRGNTIKYLRVPDEVIDKVQEETSKSRSDRRPP 93
BLAST of CX070068 vs. ExPASy Swiss-Prot
Match: LSM4_MOUSE (U6 snRNA-associated Sm-like protein LSm4 OS=Mus musculus GN=Lsm4 PE=2 SV=1) HSP 1 Score: 161.384 bits (407), Expect = 5.043e-39 Identity = 73/92 (79.35%), Postives = 81/92 (88.04%), Query Frame = 2 Query: 191 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRSDRKPP 466 MLPLSLLKTAQ HPMLVELKNGETYNGHLV+CD WMNI+LREVICTS+DGD+FWRMPECYIRG+TIKYLR+PDE+ID V+EE R P Sbjct: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDEIIDMVREEAAKGRGRGGP 92
BLAST of CX070068 vs. ExPASy Swiss-Prot
Match: LSM4_HUMAN (U6 snRNA-associated Sm-like protein LSm4 OS=Homo sapiens GN=LSM4 PE=1 SV=1) HSP 1 Score: 160.614 bits (405), Expect = 8.602e-39 Identity = 71/86 (82.56%), Postives = 81/86 (94.19%), Query Frame = 2 Query: 191 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSR 448 MLPLSLLKTAQ HPMLVELKNGETYNGHLV+CD WMNI+LREVICTS+DGD+FWRMPECYIRG+TIKYLR+PDE+ID V+EE ++ Sbjct: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDEIIDMVKEEVVAK 86
BLAST of CX070068 vs. ExPASy Swiss-Prot
Match: LSM4_BOVIN (U6 snRNA-associated Sm-like protein LSm4 OS=Bos taurus GN=LSM4 PE=2 SV=1) HSP 1 Score: 160.614 bits (405), Expect = 8.602e-39 Identity = 71/86 (82.56%), Postives = 81/86 (94.19%), Query Frame = 2 Query: 191 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSR 448 MLPLSLLKTAQ HPMLVELKNGETYNGHLV+CD WMNI+LREVICTS+DGD+FWRMPECYIRG+TIKYLR+PDE+ID V+EE ++ Sbjct: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDEIIDMVKEEVVAK 86
BLAST of CX070068 vs. ExPASy Swiss-Prot
Match: LSM4_DICDI (Probable U6 snRNA-associated Sm-like protein LSm4 OS=Dictyostelium discoideum GN=lsm4 PE=3 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 8.622e-31 Identity = 60/85 (70.59%), Postives = 72/85 (84.71%), Query Frame = 2 Query: 191 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKS 445 MLPLSLL+T QGH ++VELKNGETYNG LVNCD WMNI+L+ VI TSKD D+FW++ CYIRGNTIKY+ VPDE+ID V EE ++ Sbjct: 1 MLPLSLLRTGQGHQIMVELKNGETYNGLLVNCDNWMNINLKNVIRTSKDSDKFWKIQSCYIRGNTIKYISVPDEIIDLVAEEEQT 85
BLAST of CX070068 vs. ExPASy Swiss-Prot
Match: LSM4_CAEEL (Probable U6 snRNA-associated Sm-like protein LSm4 OS=Caenorhabditis elegans GN=lsm-4 PE=3 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 2.509e-30 Identity = 60/82 (73.17%), Postives = 72/82 (87.80%), Query Frame = 2 Query: 191 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEE 436 +LPLSLLKTAQ HPMLVELKNGETYNGHL CD+WMNIHL +VI TSKDGD+F++M E Y+RG+TIKYLR+P+ V+D V+ E Sbjct: 2 VLPLSLLKTAQNHPMLVELKNGETYNGHLKACDSWMNIHLVDVIFTSKDGDKFFKMSEAYVRGSTIKYLRIPETVVDLVKTE 83
BLAST of CX070068 vs. ExPASy Swiss-Prot
Match: LSM4_SCHPO (Probable U6 snRNA-associated Sm-like protein LSm4 OS=Schizosaccharomyces pombe GN=lsm4 PE=2 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 8.923e-28 Identity = 57/90 (63.33%), Postives = 73/90 (81.11%), Query Frame = 2 Query: 191 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKV-QEETKSRSDR 457 MLPL+LL QG P+LVELKNGET+NGHL NCD +MN+ LREVI T DGD+F+R+PECYIRGN IKYLR+ DEV+ +V +++ + R +R Sbjct: 1 MLPLTLLNATQGRPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECYIRGNNIKYLRIQDEVLSQVAKQQAQQRENR 90
BLAST of CX070068 vs. ExPASy Swiss-Prot
Match: LSM4_YEAST (U6 snRNA-associated Sm-like protein LSm4 OS=Saccharomyces cerevisiae GN=LSM4 PE=1 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 6.864e-12 Identity = 38/98 (38.78%), Postives = 56/98 (57.14%), Query Frame = 2 Query: 191 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSK----------DGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRSD 454 MLPL LL A+G M +ELKNGE G L N D WMN+ L V S+ + + ++ E YIRG IK++++ D +IDKV+++ S ++ Sbjct: 1 MLPLYLLTNAKGQQMQIELKNGEIIQGILTNVDNWMNLTLSNVTEYSEESAINSEDNAESSKAVKLNEIYIRGTFIKFIKLQDNIIDKVKQQINSNNN 98 The following BLAST results are available for this feature:
BLAST of CX070068 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 10
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX070068 ID=CX070068; Name=CX070068; organism=Citrus sinensis; type=EST; length=773bpback to top |