CX070032

Overview
NameCX070032
Unique NameCX070032
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length262
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13340 contig Csv1_Contig13340:160..421. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX070032 vs. ExPASy Swiss-Prot
Match: RL27_PEA (60S ribosomal protein L27 OS=Pisum sativum GN=RPL27 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 7.820e-32
Identity = 70/86 (81.40%), Postives = 73/86 (84.88%), Query Frame = -3
Query:    3 DDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTLDVDLKVVVTADSLQSKDKKMIACKETKK 260
            DD TRE+P GHCLVAGIKK P KVI KDSAKKTAK SRVKAFVKLV+YQHLMPTRYTLDVDLK  V  D LQSKDKK+ A KETKK
Sbjct:   30 DDGTREKPYGHCLVAGIKKFPSKVIKKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKDAVVPDVLQSKDKKVTALKETKK 115          
BLAST of CX070032 vs. ExPASy Swiss-Prot
Match: RL273_ARATH (60S ribosomal protein L27-3 OS=Arabidopsis thaliana GN=RPL27C PE=2 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 1.926e-30
Identity = 65/85 (76.47%), Postives = 71/85 (83.53%), Query Frame = -3
Query:    6 DDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTLDVDLKVVVTADSLQSKDKKMIACKETK 260
            DD  R+RP GHCLVAG+KK P KVI KDSAKKTAK SRVK F+KLV+YQHLMPTRYTLDVDLK V T D+LQSKDKK+ A KE K
Sbjct:   30 DDGNRDRPYGHCLVAGLKKYPSKVIRKDSAKKTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALQSKDKKVAALKEAK 114          
BLAST of CX070032 vs. ExPASy Swiss-Prot
Match: RL272_ARATH (60S ribosomal protein L27-2 OS=Arabidopsis thaliana GN=RPL27B PE=2 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 8.093e-29
Identity = 63/85 (74.12%), Postives = 70/85 (82.35%), Query Frame = -3
Query:    6 DDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTLDVDLKVVVTADSLQSKDKKMIACKETK 260
            DD T +R  GHCLVAG+KK P KVI KDSAKKTAK SRVK F+KLV+YQHLMPTRYTLDVDLK V T D+L+SKDKK+ A KE K
Sbjct:   30 DDGTSDRRYGHCLVAGLKKYPSKVIRKDSAKKTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALKSKDKKVTALKEAK 114          
BLAST of CX070032 vs. ExPASy Swiss-Prot
Match: RL271_ARATH (60S ribosomal protein L27-1 OS=Arabidopsis thaliana GN=RPL27A PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.400e-27
Identity = 59/85 (69.41%), Postives = 70/85 (82.35%), Query Frame = -3
Query:    6 DDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTLDVDLKVVVTADSLQSKDKKMIACKETK 260
            DD T E+  GHCLVAG+KK P KVI KDSAKKTAK SRVK F K+++YQH+MPTRYTLD+DLK VV+AD++ SKDKK+ A KE K
Sbjct:   30 DDGTVEKKYGHCLVAGLKKYPSKVIRKDSAKKTAKKSRVKCFFKVINYQHVMPTRYTLDLDLKNVVSADAISSKDKKVTALKEAK 114          
BLAST of CX070032 vs. ExPASy Swiss-Prot
Match: RL27_SOLTU (60S ribosomal protein L27 OS=Solanum tuberosum GN=RPL27 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.746e-23
Identity = 56/84 (66.67%), Postives = 65/84 (77.38%), Query Frame = -3
Query:   21 DDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTLDVDL----KVVVTADSLQSKDKKMIA 260
            D+ TR+RP GHCLVAGI + P KVI KDSAKK  K SRVKAF+KLV+Y H+MPTRYTLD DL    K VV AD LQ++DKK+ A
Sbjct:   30 DEGTRDRPYGHCLVAGISRYPKKVIRKDSAKKAGKKSRVKAFIKLVNYNHIMPTRYTLDEDLKDVVKDVVNADVLQARDKKVTA 113          
BLAST of CX070032 vs. ExPASy Swiss-Prot
Match: RL27_PYRST (60S ribosomal protein L27 OS=Pyrobotrys stellata GN=RPL27 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.442e-17
Identity = 47/86 (54.65%), Postives = 58/86 (67.44%), Query Frame = -3
Query:    3 DDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTLDVDLKVVVTADSLQSKDKKMIACKETKK 260
            DD T  RP GH LV G++K P KV  + S KK AK S +K F+K V+Y HLMPTRYTLDVD K  V A++ ++  KK+ A KE KK
Sbjct:   30 DDGTSSRPYGHALVVGLQKEPRKVTKRQSQKKQAKKSTLKTFIKTVNYNHLMPTRYTLDVDFK-GVAAEAQENPTKKVEARKECKK 114          
BLAST of CX070032 vs. ExPASy Swiss-Prot
Match: RL27B_YEAST (60S ribosomal protein L27-B OS=Saccharomyces cerevisiae GN=RPL27B PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.985e-15
Identity = 40/87 (45.98%), Postives = 59/87 (67.82%), Query Frame = -3
Query:    3 DDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTLDVD-LKVVVTADSLQSKDKKMIACKETKK 260
            D+ ++  P GH LVAGI++ P KV  K  AKK AK +++K F+K+V+Y HL+PTRYTLDV+  K VV+ ++ +   ++  A K  KK
Sbjct:   30 DEGSKSHPFGHALVAGIERYPSKVTKKHGAKKVAKRTKIKPFIKVVNYNHLLPTRYTLDVEAFKSVVSTETFEQPSQREEAKKVVKK 116          
BLAST of CX070032 vs. ExPASy Swiss-Prot
Match: RL27A_YEAST (60S ribosomal protein L27-A OS=Saccharomyces cerevisiae GN=RPL27A PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.686e-15
Identity = 40/87 (45.98%), Postives = 59/87 (67.82%), Query Frame = -3
Query:    3 DDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTLDVD-LKVVVTADSLQSKDKKMIACKETKK 260
            D+ ++  P GH LVAGI++ P KV  K  AKK AK +++K F+K+V+Y HL+PTRYTLDV+  K VV+ ++ +   ++  A K  KK
Sbjct:   30 DEGSKSHPFGHALVAGIERYPLKVTKKHGAKKVAKRTKIKPFIKVVNYNHLLPTRYTLDVEAFKSVVSTETFEQPSQREEAKKVVKK 116          
BLAST of CX070032 vs. ExPASy Swiss-Prot
Match: RL27_CANAL (60S ribosomal protein L27 OS=Candida albicans GN=RPL27 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.935e-14
Identity = 42/87 (48.28%), Postives = 58/87 (66.67%), Query Frame = -3
Query:    3 DDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTLDVD-LKVVVTADSLQSKDKKMIACKETKK 260
            D+ T+  P  H +VAGI++ P KV  K  AKK  K ++VK FVKLV+Y HLMPTRY+LDV+  K  VT+++L+   ++  A K  KK
Sbjct:   30 DEGTKSHPFPHAIVAGIERAPLKVTKKMDAKKVTKRTKVKPFVKLVNYNHLMPTRYSLDVESFKSAVTSEALEEPSQREEAKKVVKK 116          
BLAST of CX070032 vs. ExPASy Swiss-Prot
Match: RL27A_SCHPO (60S ribosomal protein L27-A OS=Schizosaccharomyces pombe GN=rpl27a PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 3.301e-14
Identity = 39/87 (44.83%), Postives = 58/87 (66.67%), Query Frame = -3
Query:    3 DDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTLDVD-LKVVVTADSLQSKDKKMIACKETKK 260
            D  ++  P GH +VAG+++ P KV     AK+ A+ SRVK F+K+V+Y HLMPTRY L++D LK ++TAD+ +   ++  A K  KK
Sbjct:   30 DQGSKSHPFGHAVVAGVERYPLKVTKSMGAKRIARRSRVKPFIKVVNYNHLMPTRYALELDNLKGLITADTFKEPTQRSAARKTVKK 116          
The following BLAST results are available for this feature:
BLAST of CX070032 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
RL27_PEA7.820e-3281.4060S ribosomal protein L27 OS=Pisum sativum GN=RPL2... [more]
RL273_ARATH1.926e-3076.4760S ribosomal protein L27-3 OS=Arabidopsis thalian... [more]
RL272_ARATH8.093e-2974.1260S ribosomal protein L27-2 OS=Arabidopsis thalian... [more]
RL271_ARATH3.400e-2769.4160S ribosomal protein L27-1 OS=Arabidopsis thalian... [more]
RL27_SOLTU1.746e-2366.6760S ribosomal protein L27 OS=Solanum tuberosum GN=... [more]
RL27_PYRST2.442e-1754.6560S ribosomal protein L27 OS=Pyrobotrys stellata G... [more]
RL27B_YEAST2.985e-1545.9860S ribosomal protein L27-B OS=Saccharomyces cerev... [more]
RL27A_YEAST8.686e-1545.9860S ribosomal protein L27-A OS=Saccharomyces cerev... [more]
RL27_CANAL1.935e-1448.2860S ribosomal protein L27 OS=Candida albicans GN=R... [more]
RL27A_SCHPO3.301e-1444.8360S ribosomal protein L27-A OS=Schizosaccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_14D04_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14D04-G8-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070032 ID=CX070032; Name=CX070032; organism=Citrus sinensis; type=EST; length=262bp
CGTTTCTTGGTCTCCTTGCAAGCTATCATCTTCTTGTCCTTGCTCTGGAG
GGAATCAGCCGTCACGACTACCTTCAAATCGACGTCGAGAGTGTAGCGCG
TGGGCATCAGGTGCTGGTAGCTGACCAACTTGACGAAGGCCTTGACGCGT
GACTACTTCGCTGTCTTCTTCGCCGAGTCCTTGTGGATCACTTTGCCCGG
TTACTTCTTTATCCCCGCTACCAGACAGTGCCCGTTCGGCCTCTCGCGGG
TCCTGTCGTCGA
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