CX070001

Overview
NameCX070001
Unique NameCX070001
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length693
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070001 vs. ExPASy Swiss-Prot
Match: LEA2_CICAR (Late embryogenesis abundant protein 2 OS=Cicer arietinum PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.079e-22
Identity = 61/137 (44.53%), Postives = 74/137 (54.01%), Query Frame = 2
Query:   74 MASHDQSYRAGEVKGQTEERTKQTMENVRDKAQAAKDRTYEAAQQAKDKTSETAQQAKQRAAETAEAGKQKTQ----------------------XXXXXXXXXXXXXXXXXXXILKQTEEKVKDAAQSAADAVKHT 418
            M SHDQSYRAGE KG+TEE+T Q + N+ DKAQAAK++  +AAQ AKDKTS+TAQ AK++  +TA+A K KTQ                                          L+QT EK K  AQ A DAVK T
Sbjct:    1 MTSHDQSYRAGEAKGRTEEKTNQMIGNIEDKAQAAKEKAQQAAQTAKDKTSQTAQAAKEKTQQTAQAAKDKTQQTTQATKEKAQDTTGRAKEKGSEMGQSTKETAQSGKDNSAGFLQQTGEKAKGMAQGATDAVKQT 137          
BLAST of CX070001 vs. ExPASy Swiss-Prot
Match: LEA1_CICAR (Late embryogenesis abundant protein 1 OS=Cicer arietinum PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.146e-21
Identity = 52/106 (49.06%), Postives = 68/106 (64.15%), Query Frame = 2
Query:   74 MASHDQSYRAGEVKGQTEERTKQTMENVRDKAQAAKDRTYEAAQQAKDKTSETAQQAKQRAAETAEAGKQKTQXXXXXXXXXXXXXXXXXXXILKQTEEKVKDAAQ 391
            MASHDQSY+AGE  G+TEE+T Q + N+ DKAQAAK++  +AAQ AKDKTS+TAQ AK++  +TA+A K+KTQ                     +QT E  K+ AQ
Sbjct:    1 MASHDQSYKAGETMGRTEEKTNQMIGNIEDKAQAAKEKAQQAAQTAKDKTSQTAQAAKEKTQQTAQAAKEKTQQTAQAAKDETQQTAQAAKDKTQQTTEATKEKAQ 106          
BLAST of CX070001 vs. ExPASy Swiss-Prot
Match: LEAD7_GOSHI (Late embryogenesis abundant protein D-7 OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.690e-20
Identity = 51/115 (44.35%), Postives = 70/115 (60.87%), Query Frame = 2
Query:   74 MASHDQSYRAGEVKGQTEERTKQTMENVRDKAQAAKDRTYEAAQQAKDKTSETAQQAKQRAAETAEAGKQKTQXXXXXXXXXXXXXXXXXXXILKQTEEKVKDAAQSAADAVKHT 418
            MASH+QSY+AG  +G+  E+ +Q  E++++KA+AAK +T E A+ AK KT ETA+ AKQ+    AE    KT+                   IL+Q  EKV++AAQ A DAVKHT
Sbjct:    1 MASHEQSYKAGRAEGRAHEKGEQMKESMKEKAEAAKQKTMETAEAAKQKTMETAEAAKQKTRGAAETTNDKTKQTAGAARGKAEETKETSGGILQQAGEKVRNAAQGATDAVKHT 115          
BLAST of CX070001 vs. ExPASy Swiss-Prot
Match: LEA76_BRANA (Late embryogenesis abundant protein 76 OS=Brassica napus PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 7.198e-15
Identity = 48/121 (39.67%), Postives = 67/121 (55.37%), Query Frame = 2
Query:   74 MASHDQSYRAGEVKGQTEERTKQTMENVRDKAQAAKDRT-----------YEAAQQAKDKTSETAQQAKQRAAETAEAGKQKTQXXXXXXXXXXXXXXXXXXXILKQTEEKVKDAAQSAAD 403
            MAS+ QSY+AGE +G+T+E+T Q M  +RDKA+  KD+T            E AQ AKDKTS+ AQ  +Q+A ETA+A K KT                      + T++K ++ AQ+A D
Sbjct:    1 MASNQQSYKAGETRGKTQEKTGQAMGAMRDKAEEGKDKTSQTAQKAQQKAQETAQAAKDKTSQAAQTTQQKAQETAQAAKDKTS------------------QAAQTTQQKAQETAQAAKD 103          
BLAST of CX070001 vs. ExPASy Swiss-Prot
Match: LEAD3_DAUCA (Late embryogenesis abundant protein Dc3 OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.039e-13
Identity = 50/138 (36.23%), Postives = 66/138 (47.83%), Query Frame = 2
Query:   74 MASH-DQSYRAGEVKGQTEERTKQTMENVRDKAQAAKDRTYEAAQQA----------------------KDKTSETAQQAKQRAAETAEAGKQKTQXXXXXXXXXXXXXXXXXXXILKQTEEKVKDAAQSAADAVKHT 418
            MASH DQSY+AGE KG  +E+T Q  + ++DKAQAAKD+  E A  A                      KDKT ETAQ AK++     +A K+K                     ++    E+VK  AQ A +AVK+T
Sbjct:    1 MASHQDQSYKAGEPKGHAQEKTGQMADTMKDKAQAAKDKASEMAGSARDRTVESKDQTGSYVSDKAGAVKDKTCETAQAAKEKTGGAMQATKEKASEMGESAKETAVAGKEKTGGLMSSAAEQVKGMAQGATEAVKNT 138          
BLAST of CX070001 vs. ExPASy Swiss-Prot
Match: LEA3_ORYSJ (Late embryogenesis abundant protein, group 3 OS=Oryza sativa subsp. japonica GN=LEA3 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.024e-13
Identity = 50/122 (40.98%), Postives = 58/122 (47.54%), Query Frame = 2
Query:   74 MASHDQ--SYRAGEVKGQTEERTKQTMENVRDKAQAAKDRTYEAA-------QQAKDKTSETAQQAKQRAAETAEAGKQKTQXXXXXXXXXXXXXXXXXXXILKQTEEKVKDAAQSAADAVK 412
            MASH    SYRAGE K  TEE+  Q M   +DKA  AKDR  EAA       Q  K+ T E AQ AK+RA+ETA+A K KT                     L +  E+ K  A   A A K
Sbjct:    1 MASHQDQASYRAGETKAHTEEKAGQVMGASKDKASEAKDRASEAAGHAAGKGQDTKEATKEKAQAAKERASETAQAAKDKTSSTSQAARDKAAESKDQTGGFLGEKTEQAKQKAAETAGAAK 122          
BLAST of CX070001 vs. ExPASy Swiss-Prot
Match: LEA3_ORYSI (Late embryogenesis abundant protein, group 3 OS=Oryza sativa subsp. indica GN=LEA3 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.024e-13
Identity = 50/122 (40.98%), Postives = 58/122 (47.54%), Query Frame = 2
Query:   74 MASHDQ--SYRAGEVKGQTEERTKQTMENVRDKAQAAKDRTYEAA-------QQAKDKTSETAQQAKQRAAETAEAGKQKTQXXXXXXXXXXXXXXXXXXXILKQTEEKVKDAAQSAADAVK 412
            MASH    SYRAGE K  TEE+  Q M   +DKA  AKDR  EAA       Q  K+ T E AQ AK+RA+ETA+A K KT                     L +  E+ K  A   A A K
Sbjct:    1 MASHQDQASYRAGETKAHTEEKAGQVMGASKDKASEAKDRASEAAGHAAGKGQDTKEATKEKAQAAKERASETAQAAKDKTSGTAQAARDKAAESKDQTGGFLGEKTEQAKQKAAETAGAAK 122          
The following BLAST results are available for this feature:
BLAST of CX070001 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
LEA2_CICAR6.079e-2244.53Late embryogenesis abundant protein 2 OS=Cicer ari... [more]
LEA1_CICAR5.146e-2149.06Late embryogenesis abundant protein 1 OS=Cicer ari... [more]
LEAD7_GOSHI5.690e-2044.35Late embryogenesis abundant protein D-7 OS=Gossypi... [more]
LEA76_BRANA7.198e-1539.67Late embryogenesis abundant protein 76 OS=Brassica... [more]
LEAD3_DAUCA1.039e-1336.23Late embryogenesis abundant protein Dc3 OS=Daucus ... [more]
LEA3_ORYSJ3.024e-1340.98Late embryogenesis abundant protein, group 3 OS=Or... [more]
LEA3_ORYSI3.024e-1340.98Late embryogenesis abundant protein, group 3 OS=Or... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_14B10_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14B10-C20-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070001 ID=CX070001; Name=CX070001; organism=Citrus sinensis; type=EST; length=693bp
AAACGATCAAATACTCGTCCACTAAATCTTTCAGCAAATTAATCTCTTTT
AAGCACCCTTTTCAGATATCAAAATGGCATCCCACGATCAGAGCTACAGA
GCTGGTGAAGTCAAAGGCCAGACCGAGGAGAGGACGAAACAGACGATGGA
GAATGTGAGGGACAAGGCGCAGGCAGCCAAGGACAGGACTTACGAGGCAG
CTCAGCAGGCCAAGGACAAGACCTCTGAGACGGCACAGCAGGCGAAGCAG
AGGGCTGCAGAAACGGCAGAGGCGGGGAAGCAGAAAACCCAGGAGACGGG
ACAGGCAACCGGGGAGAAGGCGGAGGCAGCCAAGGAGAAGACAGGAGGCA
TTCTTAAACAGACCGAAGAGAAAGTGAAGGACGCTGCTCAGAGTGCTGCT
GACGCCGTGAAGCACACTTTCGGATTCGGTGGCGCTGGTGAAGAGGAGGA
ACGTTATGGTGATCGAGACAGGAACACTTACACAAAGGGTTAATTAATTA
ATAGTACTCATTCAAGTCTGATCTAACCAGCTGCTGATTCAAGTCTGATA
TCAGCAGGCGCTGCTTTGTGTTGTGTGTTTTGTTTTCAGAGTCGTCATGT
AATAATGTTTTGTCTCTCATTTTGGGCATGTTCTTTCAGAGTCCCTTCAT
TAGGTTATAAATGATGAAGGATAGTTTAATACTGTTACTCTTT
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