DR404155

Overview
NameDR404155
Unique NameDR404155
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length775
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR404155 vs. ExPASy Swiss-Prot
Match: ARPC4_DICDI (Actin-related protein 2/3 complex subunit 4 OS=Dictyostelium discoideum GN=arcD PE=1 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 6.122e-61
Identity = 113/168 (67.26%), Postives = 141/168 (83.93%), Query Frame = 3
Query:  102 MSNTLRLYLACIRNTLDAALCLQNFPCQEVERHNKPEVELKTSPELLLNPILICRNEAEKCLIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNYHCEEMQKHKLIDFIAQFMEDIDKEISELKMSVNTRGRLVATEYLKQF 605
            MS     YL CIRNTL A++CLQNF  Q VERHNKPEVE+KTS EL+LNP++I RN+ E+ LIETSINS+RIS+ +K++DE++ IL KKF+RFL  RAE F +LRRKPV+GYDISFL+TN+H E M KHKL+DFI QFMEDID+EIS+LK+++N RGR+VA+EYLK F
Sbjct:    1 MSTAQVPYLNCIRNTLTASMCLQNFGSQIVERHNKPEVEVKTSKELVLNPVIIARNKNERVLIETSINSIRISVSIKKSDEVDVILAKKFVRFLQQRAENFIILRRKPVEGYDISFLVTNFHTENMFKHKLVDFIIQFMEDIDREISDLKLTLNARGRIVASEYLKNF 168          
BLAST of DR404155 vs. ExPASy Swiss-Prot
Match: ARPC4_MOUSE (Actin-related protein 2/3 complex subunit 4 OS=Mus musculus GN=Arpc4 PE=1 SV=3)

HSP 1 Score: 231.491 bits (589), Expect = 3.968e-60
Identity = 113/168 (67.26%), Postives = 138/168 (82.14%), Query Frame = 3
Query:  102 MSNTLRLYLACIRNTLDAALCLQNFPCQEVERHNKPEVELKTSPELLLNPILICRNEAEKCLIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNYHCEEMQKHKLIDFIAQFMEDIDKEISELKMSVNTRGRLVATEYLKQF 605
            M+ TLR YL+ +R TL AALCL+NF  Q VERHNKPEVE+++S ELLL P+ I RNE EK LIE SINS+R+S+ VKQADE+E IL  KF+RF+ MRAE F +LRRKPV+GYDISFLITN+H E+M KHKL+DF+  FME+IDKEISE+K+SVN R R+VA E+LK F
Sbjct:    1 MTATLRPYLSAVRATLQAALCLENFSSQVVERHNKPEVEVRSSKELLLQPVTISRNEKEKVLIEGSINSVRVSIAVKQADEIEKILCHKFMRFMMMRAENFFILRRKPVEGYDISFLITNFHTEQMYKHKLVDFVIHFMEEIDKEISEMKLSVNARARIVAEEFLKNF 168          
BLAST of DR404155 vs. ExPASy Swiss-Prot
Match: ARPC4_HUMAN (Actin-related protein 2/3 complex subunit 4 OS=Homo sapiens GN=ARPC4 PE=1 SV=3)

HSP 1 Score: 231.491 bits (589), Expect = 3.968e-60
Identity = 113/168 (67.26%), Postives = 138/168 (82.14%), Query Frame = 3
Query:  102 MSNTLRLYLACIRNTLDAALCLQNFPCQEVERHNKPEVELKTSPELLLNPILICRNEAEKCLIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNYHCEEMQKHKLIDFIAQFMEDIDKEISELKMSVNTRGRLVATEYLKQF 605
            M+ TLR YL+ +R TL AALCL+NF  Q VERHNKPEVE+++S ELLL P+ I RNE EK LIE SINS+R+S+ VKQADE+E IL  KF+RF+ MRAE F +LRRKPV+GYDISFLITN+H E+M KHKL+DF+  FME+IDKEISE+K+SVN R R+VA E+LK F
Sbjct:    1 MTATLRPYLSAVRATLQAALCLENFSSQVVERHNKPEVEVRSSKELLLQPVTISRNEKEKVLIEGSINSVRVSIAVKQADEIEKILCHKFMRFMMMRAENFFILRRKPVEGYDISFLITNFHTEQMYKHKLVDFVIHFMEEIDKEISEMKLSVNARARIVAEEFLKNF 168          
BLAST of DR404155 vs. ExPASy Swiss-Prot
Match: ARPC4_BOVIN (Actin-related protein 2/3 complex subunit 4 OS=Bos taurus GN=ARPC4 PE=1 SV=3)

HSP 1 Score: 231.491 bits (589), Expect = 3.968e-60
Identity = 113/168 (67.26%), Postives = 138/168 (82.14%), Query Frame = 3
Query:  102 MSNTLRLYLACIRNTLDAALCLQNFPCQEVERHNKPEVELKTSPELLLNPILICRNEAEKCLIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNYHCEEMQKHKLIDFIAQFMEDIDKEISELKMSVNTRGRLVATEYLKQF 605
            M+ TLR YL+ +R TL AALCL+NF  Q VERHNKPEVE+++S ELLL P+ I RNE EK LIE SINS+R+S+ VKQADE+E IL  KF+RF+ MRAE F +LRRKPV+GYDISFLITN+H E+M KHKL+DF+  FME+IDKEISE+K+SVN R R+VA E+LK F
Sbjct:    1 MTATLRPYLSAVRATLQAALCLENFSSQVVERHNKPEVEVRSSKELLLQPVTISRNEKEKVLIEGSINSVRVSIAVKQADEIEKILCHKFMRFMMMRAENFFILRRKPVEGYDISFLITNFHTEQMYKHKLVDFVIHFMEEIDKEISEMKLSVNARARIVAEEFLKNF 168          
BLAST of DR404155 vs. ExPASy Swiss-Prot
Match: ARPC4_SCHPO (Actin-related protein 2/3 complex subunit 4 OS=Schizosaccharomyces pombe GN=arc4 PE=1 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 3.844e-55
Identity = 103/168 (61.31%), Postives = 135/168 (80.36%), Query Frame = 3
Query:  102 MSNTLRLYLACIRNTLDAALCLQNFPCQEVERHNKPEVELKTSPELLLNPILICRNEAEKCLIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNYHCEEMQKHKLIDFIAQFMEDIDKEISELKMSVNTRGRLVATEYLKQF 605
            MSNTLR YL  +R+TL A+L L+ F  + VER ++PEVE+  SPE+LL P+++ RNE E+CLIE+S+NS+R S+++KQ DE+E IL +KF++FL  RAE+F +LRRKPVQGYDISFLITNYH EEM KHKL+DFI +FME++D EISE+K+ +N R RLVA  YL  F
Sbjct:    1 MSNTLRPYLNAVRSTLTASLALEEFSSEIVERQSQPEVEVGRSPEILLKPLVVSRNEQEQCLIESSVNSVRFSIRIKQVDEIERILVRKFMQFLMGRAESFFILRRKPVQGYDISFLITNYHTEEMLKHKLVDFIIEFMEEVDAEISEMKLFLNGRARLVAETYLSCF 168          
BLAST of DR404155 vs. ExPASy Swiss-Prot
Match: ARPC4_CAEEL (Probable actin-related protein 2/3 complex subunit 4 OS=Caenorhabditis elegans GN=arx-6 PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 3.598e-53
Identity = 101/168 (60.12%), Postives = 132/168 (78.57%), Query Frame = 3
Query:  102 MSNTLRLYLACIRNTLDAALCLQNFPCQEVERHNKPEVELKTSPELLLNPILICRNEAEKCLIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNYHCEEMQKHKLIDFIAQFMEDIDKEISELKMSVNTRGRLVATEYLKQF 605
            MS TL+ YL  +R+TL AALCL+ F  Q VERHNKPEVE++TS ELL+ P+++ RN+ E+ LIE S+NS+RIS+ +KQ+DE+E IL  KF RF+  RA+ F VLRRKP+ GYDISFLIT  H E M KHKL+DF+  FM++IDKEISE+K+S+N R R+ A E+LK+F
Sbjct:    1 MSATLQPYLEAVRHTLQAALCLEQFSSQVVERHNKPEVEVQTSKELLMTPVVVARNKQERVLIEPSVNSVRISIAIKQSDEIEKILCHKFTRFMCQRADNFFVLRRKPLPGYDISFLITASHTEAMFKHKLVDFLLHFMQEIDKEISEMKLSLNARARVSAEEFLKRF 168          
BLAST of DR404155 vs. ExPASy Swiss-Prot
Match: ARPC4_YEAST (Actin-related protein 2/3 complex subunit 4 OS=Saccharomyces cerevisiae GN=ARC19 PE=1 SV=2)

HSP 1 Score: 204.527 bits (519), Expect = 5.195e-52
Identity = 106/170 (62.35%), Postives = 128/170 (75.29%), Query Frame = 3
Query:  102 MSNTLRLYLACIRNTLDAALCLQNFPCQEVERHNKPEVEL-KTSPELLLNPILICRNEAEKCLIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNYHCEEMQKHKLIDFIAQFMEDIDKEISELKMSVNTRGRLVATEYLKQFV 608
            MS +LR YL  +R +L+AAL L NF  QEVERHN+PEVE+  TS ELLL P+ I RNE E+ LIE S+NS+R+SL VKQADE+E IL  KF RFL  RAEAF +LRR P+ GY ISFLITN H E M+  KL+DFI +FMED+DKEISE+K+ +N R R VA  YL +FV
Sbjct:    1 MSQSLRPYLTAVRYSLEAALTLSNFSSQEVERHNRPEVEVPNTSAELLLQPMHISRNENEQVLIEPSVNSVRMSLMVKQADEIEQILVHKFTRFLEQRAEAFYILRRVPIPGYSISFLITNKHTESMKTGKLVDFIIEFMEDVDKEISEIKLFLNARARFVAEAYLDEFV 170          
The following BLAST results are available for this feature:
BLAST of DR404155 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
ARPC4_DICDI6.122e-6167.26Actin-related protein 2/3 complex subunit 4 OS=Dic... [more]
ARPC4_MOUSE3.968e-6067.26Actin-related protein 2/3 complex subunit 4 OS=Mus... [more]
ARPC4_HUMAN3.968e-6067.26Actin-related protein 2/3 complex subunit 4 OS=Hom... [more]
ARPC4_BOVIN3.968e-6067.26Actin-related protein 2/3 complex subunit 4 OS=Bos... [more]
ARPC4_SCHPO3.844e-5561.31Actin-related protein 2/3 complex subunit 4 OS=Sch... [more]
ARPC4_CAEEL3.598e-5360.12Probable actin-related protein 2/3 complex subunit... [more]
ARPC4_YEAST5.195e-5262.35Actin-related protein 2/3 complex subunit 4 OS=Sac... [more]
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Properties
Property NameValue
Genbank descriptionCSAG-PNP1245H04 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone CSAG-PNP1245H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404155 ID=DR404155; Name=DR404155; organism=Citrus sinensis; type=EST; length=775bp
GGGGACCGCACTCCCTGGTCTCACAAATAACACAACACAGACAGACGACG
ACGGCGTCTNNNNCTATTCTAGGATCATTTCAAATCGCTACACGCAGAAA
CATGTCAAACACATTGCGATTGTATTTGGCTTGCATAAGGAACACGCTAG
ACGCCGCCCTGTGTTTGCAGAATTTTCCTTGTCAAGAAGTTGAAAGGCAT
AATAAACCAGAGGTTGAACTAAAGACCAGCCCAGAACTTCTACTGAATCC
TATTTTGATATGTCGAAACGAGGCTGAAAAATGCTTAATAGAGACATCTA
TCAACTCACTTCGAATAAGCCTTAAGGTAAAGCAGGCAGATGAACTTGAA
AACATACTAACTAAAAAATTTCTTAGATTTTTGTCAATGAGAGCAGAAGC
ATTTCAAGTTTTGAGGAGAAAACCAGTGCAGGGTTATGATATCAGCTTTC
TTATCACTAACTACCATTGTGAGGAGATGCAGAAACACAAGCTCATAGAT
TTTATTGCGCAGTTCATGGAGGATATCGATAAAGAGATAAGTGAATTGAA
AATGTCTGTGAACACGCGTGGGAGGTTGGTGGCTACTGAGTATCTGAAGC
AATTTGTATGAATTTTTGTGCTTTTTTTGCATCATTGTTGCTGGTTACTT
GTTTTCCTCTAGGGATCGCTGTTGTCAATTGTGTTGTTTATCTACCCATC
AAGATGCAACAATTCACTGTATTATTATTATGATTATGATTTTCGTTTTC
ATTTTTAAGTCTTACTTGAAATGAA
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