DR404146

Overview
NameDR404146
Unique NameDR404146
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DR404146 vs. ExPASy Swiss-Prot
Match: COPD_ARATH (Coatomer subunit delta OS=Arabidopsis thaliana GN=At5g05010 PE=1 SV=2)

HSP 1 Score: 319.316 bits (817), Expect = 1.254e-86
Identity = 164/198 (82.83%), Postives = 182/198 (91.92%), Query Frame = 1 
Query:  112 AASIVSKSGKILVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQPIEALCLLLVTNKQSNILEDLETLRLLSKLVPEYSYSLDEEGICKTAFELLFAFDEVISLGHKENVTVAQVKQYCEMESHEEKLHKLVVQSKINETKDVMKRKASEIDKSKIEKNRGDKGGFMSLQSMGSGRIESSFSDMSIS 705
            AA+IV KSGK++VSR +VDMSRIRIEGLLAAFPKLVG GKQHTY+ETENVRYVYQPIEAL LLLVT KQSNILEDL TL LLSKLVPEYS SLDEEGI + +FEL+FAFDEVISLGHKE+VTVAQVKQYCEMESHEEKLHKLV+QSKIN+TKDVMKRKA+EIDKSKIEKN+   GGF S+ SMGSGR+ES F+++SIS
Sbjct:    5 AAAIVVKSGKVIVSRHYVDMSRIRIEGLLAAFPKLVGMGKQHTYIETENVRYVYQPIEALFLLLVTTKQSNILEDLATLTLLSKLVPEYSMSLDEEGISRASFELIFAFDEVISLGHKESVTVAQVKQYCEMESHEEKLHKLVMQSKINDTKDVMKRKANEIDKSKIEKNK--PGGFSSMGSMGSGRLESGFNELSIS 200
[Close]
BLAST of DR404146 vs. ExPASy Swiss-Prot
Match: COPD1_ORYSJ (Coatomer subunit delta-1 OS=Oryza sativa subsp. japonica GN=Os05g0310800 PE=2 SV=1)

HSP 1 Score: 314.694 bits (805), Expect = 3.088e-85
Identity = 160/198 (80.81%), Postives = 180/198 (90.91%), Query Frame = 1 
Query:  112 AASIVSKSGKILVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQPIEALCLLLVTNKQSNILEDLETLRLLSKLVPEYSYSLDEEGICKTAFELLFAFDEVISLGHKENVTVAQVKQYCEMESHEEKLHKLVVQSKINETKDVMKRKASEIDKSKIEKNRGDKGGFMSLQSMGSGRIESSFSDMSIS 705
            AASI+SKSGK LVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQPIE L LLL+TNKQSNILEDL+TLRLLSKLVPEYS SLDEEG+CKTAFEL+FAFDE ISLG+KENVTV QVKQYCEMESHEEK HKL++QSKINET+DVMK+KASE+DK ++E+ + DKGG+ S+   G   IE +F+DMSI+
Sbjct:    5 AASIISKSGKALVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQPIEGLYLLLITNKQSNILEDLDTLRLLSKLVPEYSPSLDEEGVCKTAFELIFAFDEAISLGNKENVTVQQVKQYCEMESHEEKAHKLMMQSKINETRDVMKKKASELDKMRMERGKLDKGGYSSIS--GPRVIEKTFNDMSIT 200
[Close]
BLAST of DR404146 vs. ExPASy Swiss-Prot
Match: COPD2_ORYSJ (Coatomer subunit delta-2 OS=Oryza sativa subsp. japonica GN=Os05g0311000 PE=2 SV=1)

HSP 1 Score: 311.997 bits (798), Expect = 2.002e-84
Identity = 158/198 (79.80%), Postives = 178/198 (89.90%), Query Frame = 1 
Query:  112 AASIVSKSGKILVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQPIEALCLLLVTNKQSNILEDLETLRLLSKLVPEYSYSLDEEGICKTAFELLFAFDEVISLGHKENVTVAQVKQYCEMESHEEKLHKLVVQSKINETKDVMKRKASEIDKSKIEKNRGDKGGFMSLQSMGSGRIESSFSDMSIS 705
            AASI+SKSGK LVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQPIE L LLL+TNKQSNILEDL+TLRLLSKLVPEYS SLDEEG+CKTAFEL+FAFDE I LG+KENVTV QVKQYCEMESHEEK HKL++QSKINET+DVMK+KASE+DK K+E+ + DKGG+ ++   G   +E +F DMSI+
Sbjct:    5 AASIISKSGKALVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQPIEGLYLLLITNKQSNILEDLDTLRLLSKLVPEYSPSLDEEGVCKTAFELIFAFDEAICLGNKENVTVQQVKQYCEMESHEEKAHKLMMQSKINETRDVMKKKASELDKMKMERGKLDKGGYSAIS--GPRVVEKAFGDMSIT 200
[Close]
BLAST of DR404146 vs. ExPASy Swiss-Prot
Match: COPD3_ORYSJ (Coatomer subunit delta-3 OS=Oryza sativa subsp. japonica GN=Os01g0833700 PE=2 SV=2)

HSP 1 Score: 310.457 bits (794), Expect = 5.824e-84
Identity = 160/197 (81.22%), Postives = 177/197 (89.85%), Query Frame = 1 
Query:  112 AASIVSKSGKILVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQPIEALCLLLVTNKQSNILEDLETLRLLSKLVPEYSYSLDEEGICKTAFELLFAFDEVISLGHKENVTVAQVKQYCEMESHEEKLHKLVVQSKINETKDVMKRKASEIDKSKIEKNRGDKGGFMSLQSMGSGRIESSFSDMSI 702
            AASI+SKSGK LVSRQFVDMSRIRI+GLLAAFPKLVG+GKQHTYVETENVRYVYQPIEAL LLL+TNKQSNILEDL+TLRLLSKL+PEY+ SLDEEG+CK AFELLFAF E ISLG+KENVTVAQVKQYCEMESHEEKLHKLV+QSKINETKDVM+RK +EI+KSK ++ + DKGGF      GS R  +SFSDM I
Sbjct:    5 AASIISKSGKALVSRQFVDMSRIRIDGLLAAFPKLVGSGKQHTYVETENVRYVYQPIEALYLLLITNKQSNILEDLDTLRLLSKLIPEYAPSLDEEGVCKAAFELLFAFIEAISLGNKENVTVAQVKQYCEMESHEEKLHKLVMQSKINETKDVMRRKVTEIEKSKTDRGKPDKGGF------GSLRTPNSFSDMGI 195
[Close]
BLAST of DR404146 vs. ExPASy Swiss-Prot
Match: COPD_RAT (Coatomer subunit delta OS=Rattus norvegicus GN=Arcn1 PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 5.317e-53
Identity = 101/184 (54.89%), Postives = 144/184 (78.26%), Query Frame = 1 
Query:  112 AASIVSKSGKILVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQPIEALCLLLVTNKQSNILEDLETLRLLSKLVPEYSYSLDEEGICKTAFELLFAFDEVISLGHKENVTVAQVKQYCEMESHEEKLHKLVVQSKINETKDVMKRKASEIDKSKIEKNRGDK-----GGFMS 648
            AA++ +K+GK +VSRQFV+M+R RIEGLLAAFPKL+ TGKQHT+VETE+VRYVYQP+E L ++L+T K SNILEDLETLRL S+++PEY  +L+E  I +  F+L+FAFDE+++LG++ENV +AQ++ + EM+SHEEK+ + V +++  E K  M+RKA E+ +++ +  R  K     GGF S
Sbjct:    5 AAAVCTKAGKAIVSRQFVEMTRTRIEGLLAAFPKLMNTGKQHTFVETESVRYVYQPMEKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALEENEISEHCFDLIFAFDEIVALGYRENVNLAQIRTFTEMDSHEEKVFRAVRETQEREAKAEMRRKAKELQQARRDAERQGKKAPGFGGFGS 188
[Close]
BLAST of DR404146 vs. ExPASy Swiss-Prot
Match: COPD_PONAB (Coatomer subunit delta OS=Pongo abelii GN=ARCN1 PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 5.317e-53
Identity = 101/184 (54.89%), Postives = 144/184 (78.26%), Query Frame = 1 
Query:  112 AASIVSKSGKILVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQPIEALCLLLVTNKQSNILEDLETLRLLSKLVPEYSYSLDEEGICKTAFELLFAFDEVISLGHKENVTVAQVKQYCEMESHEEKLHKLVVQSKINETKDVMKRKASEIDKSKIEKNRGDK-----GGFMS 648
            AA++ +K+GK +VSRQFV+M+R RIEGLLAAFPKL+ TGKQHT+VETE+VRYVYQP+E L ++L+T K SNILEDLETLRL S+++PEY  +L+E  I +  F+L+FAFDE+++LG++ENV +AQ++ + EM+SHEEK+ + V +++  E K  M+RKA E+ +++ +  R  K     GGF S
Sbjct:    5 AAAVCTKAGKAIVSRQFVEMTRTRIEGLLAAFPKLMNTGKQHTFVETESVRYVYQPMEKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALEENEISEHCFDLIFAFDEIVALGYRENVNLAQIRTFTEMDSHEEKVFRAVRETQEREAKAEMRRKAKELQQARRDAERQGKKAPGFGGFGS 188
[Close]
BLAST of DR404146 vs. ExPASy Swiss-Prot
Match: COPD_MOUSE (Coatomer subunit delta OS=Mus musculus GN=Arcn1 PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 5.317e-53
Identity = 101/184 (54.89%), Postives = 144/184 (78.26%), Query Frame = 1 
Query:  112 AASIVSKSGKILVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQPIEALCLLLVTNKQSNILEDLETLRLLSKLVPEYSYSLDEEGICKTAFELLFAFDEVISLGHKENVTVAQVKQYCEMESHEEKLHKLVVQSKINETKDVMKRKASEIDKSKIEKNRGDK-----GGFMS 648
            AA++ +K+GK +VSRQFV+M+R RIEGLLAAFPKL+ TGKQHT+VETE+VRYVYQP+E L ++L+T K SNILEDLETLRL S+++PEY  +L+E  I +  F+L+FAFDE+++LG++ENV +AQ++ + EM+SHEEK+ + V +++  E K  M+RKA E+ +++ +  R  K     GGF S
Sbjct:    5 AAAVCTKAGKAIVSRQFVEMTRTRIEGLLAAFPKLMNTGKQHTFVETESVRYVYQPMEKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALEENEISEHCFDLIFAFDEIVALGYRENVNLAQIRTFTEMDSHEEKVFRAVRETQEREAKAEMRRKAKELQQARRDAERQGKKAPGFGGFGS 188
[Close]
BLAST of DR404146 vs. ExPASy Swiss-Prot
Match: COPD_HUMAN (Coatomer subunit delta OS=Homo sapiens GN=ARCN1 PE=1 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 5.317e-53
Identity = 101/184 (54.89%), Postives = 144/184 (78.26%), Query Frame = 1 
Query:  112 AASIVSKSGKILVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQPIEALCLLLVTNKQSNILEDLETLRLLSKLVPEYSYSLDEEGICKTAFELLFAFDEVISLGHKENVTVAQVKQYCEMESHEEKLHKLVVQSKINETKDVMKRKASEIDKSKIEKNRGDK-----GGFMS 648
            AA++ +K+GK +VSRQFV+M+R RIEGLLAAFPKL+ TGKQHT+VETE+VRYVYQP+E L ++L+T K SNILEDLETLRL S+++PEY  +L+E  I +  F+L+FAFDE+++LG++ENV +AQ++ + EM+SHEEK+ + V +++  E K  M+RKA E+ +++ +  R  K     GGF S
Sbjct:    5 AAAVCTKAGKAIVSRQFVEMTRTRIEGLLAAFPKLMNTGKQHTFVETESVRYVYQPMEKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALEENEISEHCFDLIFAFDEIVALGYRENVNLAQIRTFTEMDSHEEKVFRAVRETQEREAKAEMRRKAKELQQARRDAERQGKKAPGFGGFGS 188
[Close]
BLAST of DR404146 vs. ExPASy Swiss-Prot
Match: COPD_BOVIN (Coatomer subunit delta OS=Bos taurus GN=ARCN1 PE=1 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 5.317e-53
Identity = 101/184 (54.89%), Postives = 144/184 (78.26%), Query Frame = 1 
Query:  112 AASIVSKSGKILVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQPIEALCLLLVTNKQSNILEDLETLRLLSKLVPEYSYSLDEEGICKTAFELLFAFDEVISLGHKENVTVAQVKQYCEMESHEEKLHKLVVQSKINETKDVMKRKASEIDKSKIEKNRGDK-----GGFMS 648
            AA++ +K+GK +VSRQFV+M+R RIEGLLAAFPKL+ TGKQHT+VETE+VRYVYQP+E L ++L+T K SNILEDLETLRL S+++PEY  +L+E  I +  F+L+FAFDE+++LG++ENV +AQ++ + EM+SHEEK+ + V +++  E K  M+RKA E+ +++ +  R  K     GGF S
Sbjct:    5 AAAVCTKAGKAIVSRQFVEMTRTRIEGLLAAFPKLMNTGKQHTFVETESVRYVYQPMEKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALEENEISEHCFDLIFAFDEIVALGYRENVNLAQIRTFTEMDSHEEKVFRAVRETQEREAKAEMRRKAKELQQARRDAERQGKKAPGFGGFGS 188
[Close]
BLAST of DR404146 vs. ExPASy Swiss-Prot
Match: COPD_CHICK (Coatomer subunit delta OS=Gallus gallus GN=ARCN1 PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 9.069e-53
Identity = 101/184 (54.89%), Postives = 144/184 (78.26%), Query Frame = 1 
Query:  112 AASIVSKSGKILVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQPIEALCLLLVTNKQSNILEDLETLRLLSKLVPEYSYSLDEEGICKTAFELLFAFDEVISLGHKENVTVAQVKQYCEMESHEEKLHKLVVQSKINETKDVMKRKASEIDKSKIEKNRGDK-----GGFMS 648
            AA++ +K+GK +VSRQFV+M+R RIEGLLAAFPKL+ TGKQHT+VETE+VRYVYQP+E L ++L+T K SNILEDLETLRL S+++PEY  +L+E  I +  F+L+FAFDE+++LG++ENV +AQ++ + EM+SHEEK+ + V +++  E K  M+RKA E+ +++ +  R  K     GGF S
Sbjct:    5 AAAVCTKAGKAIVSRQFVEMTRTRIEGLLAAFPKLMNTGKQHTFVETESVRYVYQPMEKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALEENEISEHCFDLIFAFDEIVALGYRENVNLAQIRTFTEMDSHEEKVFRAVRETQEREAKAEMRRKAKELQQARRDAERLGKKAPGFGGFGS 188
The following BLAST results are available for this feature:
BLAST of DR404146 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
COPD_ARATH1.254e-8682.83Coatomer subunit delta OS=Arabidopsis thaliana GN=... [more]
COPD1_ORYSJ3.088e-8580.81Coatomer subunit delta-1 OS=Oryza sativa subsp. ja... [more]
COPD2_ORYSJ2.002e-8479.80Coatomer subunit delta-2 OS=Oryza sativa subsp. ja... [more]
COPD3_ORYSJ5.824e-8481.22Coatomer subunit delta-3 OS=Oryza sativa subsp. ja... [more]
COPD_RAT5.317e-5354.89Coatomer subunit delta OS=Rattus norvegicus GN=Arc... [more]
COPD_PONAB5.317e-5354.89Coatomer subunit delta OS=Pongo abelii GN=ARCN1 PE... [more]
COPD_MOUSE5.317e-5354.89Coatomer subunit delta OS=Mus musculus GN=Arcn1 PE... [more]
COPD_HUMAN5.317e-5354.89Coatomer subunit delta OS=Homo sapiens GN=ARCN1 PE... [more]
COPD_BOVIN5.317e-5354.89Coatomer subunit delta OS=Bos taurus GN=ARCN1 PE=1... [more]
COPD_CHICK9.069e-5354.89Coatomer subunit delta OS=Gallus gallus GN=ARCN1 P... [more]

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Properties
Property NameValue
Genbank descriptionCSAG-PNP1245G16 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone CSAG-PNP1245G16 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404146 ID=DR404146; Name=DR404146; organism=Citrus sinensis; type=EST; length=706bp
GGGGGCAAATTCTGTTGCTTCTGAAGAAGACTAAGACGCACGCAGAGAAG
GACACCGATCCAGGTTCTGTTGGTGGTAGTTTCTTCTTCTTAATTCAAGA
TGGTTGTTCTTGCTGCTTCTATCGTGTCCAAATCTGGCAAAATTCTTGTC
TCTAGGCAGTTTGTGGATATGTCTCGAATCAGGATTGAAGGTCTTCTTGC
TGCTTTTCCTAAGTTGGTTGGCACTGGAAAACAGCATACATATGTTGAGA
CTGAAAATGTGCGCTATGTTTACCAGCCAATAGAAGCTTTGTGTCTGCTG
CTTGTGACAAACAAACAGAGCAACATCCTTGAAGATTTGGAAACTCTGAG
GCTTCTCTCCAAGCTTGTACCTGAATATTCATACTCTCTAGATGAGGAGG
GTATCTGCAAGACAGCTTTTGAGCTGCTTTTTGCATTCGACGAAGTAATA
TCCCTTGGGCACAAGGAAAATGTGACTGTTGCACAGGTTAAGCAATACTG
TGAGATGGAGAGTCATGAAGAGAAGTTGCACAAGCTTGTGGTGCAGAGCA
AGATCAATGAAACCAAGGATGTCATGAAGCGCAAAGCTAGTGAAATTGAC
AAAAGCAAGATTGAAAAGAATAGAGGCGACAAAGGAGGGTTTATGTCCTT
ACAGTCAATGGGATCAGGAAGAATTGAAAGTAGCTTTAGCGATATGAGTA
TTTCTA
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