CX069972

Overview
NameCX069972
Unique NameCX069972
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length749
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069972 vs. ExPASy Swiss-Prot
Match: COPE1_ARATH (Coatomer subunit epsilon-1 OS=Arabidopsis thaliana GN=At1g30630 PE=2 SV=1)

HSP 1 Score: 417.157 bits (1071), Expect = 4.868e-116
Identity = 203/248 (81.85%), Postives = 225/248 (90.73%), Query Frame = 3
Query:    6 AAPDHLFNLRNNFYLGAYQAAINNSDLTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDESAATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGXXXXXXXXXXXXPETLANLVVCSLH 749
            A PDHLFNLRN+FYLGAYQAAINNS++ NL  +D VERDCLV+R+YIALGSYQLVISEIDE+AATPLQAVKLLA+YLSSP+NKESTISSL+EWL+DP +G+NA +RLIAG IFMHEEDYNEALKHT++GGTM+LHALNVQIF+KMHRSD+AE+QLR MQQIDEDHTLTQLA+AWLNLAVGGSKIQEAYLIFQDFSEKYPMT LILNGKAVCCMHMGNF+EAE             PETLANLVVCSLH
Sbjct:    5 AGPDHLFNLRNHFYLGAYQAAINNSEIPNLSQEDIVERDCLVHRAYIALGSYQLVISEIDEAAATPLQAVKLLAMYLSSPENKESTISSLREWLADPTVGNNAIIRLIAGTIFMHEEDYNEALKHTHSGGTMDLHALNVQIFIKMHRSDFAEKQLRVMQQIDEDHTLTQLASAWLNLAVGGSKIQEAYLIFQDFSEKYPMTSLILNGKAVCCMHMGNFEEAETLLLEALNKDAKDPETLANLVVCSLH 252          
BLAST of CX069972 vs. ExPASy Swiss-Prot
Match: COPE2_ARATH (Coatomer subunit epsilon-2 OS=Arabidopsis thaliana GN=At2g34840 PE=2 SV=1)

HSP 1 Score: 415.231 bits (1066), Expect = 1.850e-115
Identity = 205/248 (82.66%), Postives = 223/248 (89.92%), Query Frame = 3
Query:    6 AAPDHLFNLRNNFYLGAYQAAINNSDLTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDESAATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGXXXXXXXXXXXXPETLANLVVCSLH 749
            A PDHLFNLRNNFYLGAYQ AINNS++ NL P++AVERDCLV+RSYIALGSYQLVISEIDESAATPLQAVKLLA+YLS+P NKESTISSLKEWL+D  IG+N TLRLIAGIIFMHEEDYNE LKHT+AGGTM+L+ALNVQIF+KMHR++YAE+QLR MQQIDEDHTLTQLA+AWLNLAVGGSKIQEAYLIF+DFSEKYPMT LILNGKAVCCM MGNFDEAE             PETLANLVVCSLH
Sbjct:    6 AGPDHLFNLRNNFYLGAYQTAINNSEIANLSPENAVERDCLVFRSYIALGSYQLVISEIDESAATPLQAVKLLAMYLSTPQNKESTISSLKEWLADSTIGNNDTLRLIAGIIFMHEEDYNETLKHTHAGGTMDLYALNVQIFIKMHRAEYAEKQLRVMQQIDEDHTLTQLASAWLNLAVGGSKIQEAYLIFEDFSEKYPMTCLILNGKAVCCMQMGNFDEAETLLLEALNKDAKDPETLANLVVCSLH 253          
BLAST of CX069972 vs. ExPASy Swiss-Prot
Match: COPE1_ORYSJ (Coatomer subunit epsilon-1 OS=Oryza sativa subsp. japonica GN=COPE1 PE=2 SV=1)

HSP 1 Score: 381.333 bits (978), Expect = 2.960e-105
Identity = 190/248 (76.61%), Postives = 214/248 (86.29%), Query Frame = 3
Query:    6 AAPDHLFNLRNNFYLGAYQAAINNSDLTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDESAATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGXXXXXXXXXXXXPETLANLVVCSLH 749
            A+PD LFNLRN FYLGAYQAAINNSD+  L  D A ERD +V+RSY+ALGSYQLVISEID SAAT LQAVKLLALYLS   +KES I SLKEWLSD A+GSN  LRLIAGIIFMHE+DY EALKHT++GGT++LHALNVQIF+KMHRSDYAE+QL+ MQQIDEDHTLTQLANAWL++AVGGSKI+EAYLIFQDF+EKYPMTG++LNGKAVCCMHMG+FDEAE             PETLANL+VC+LH
Sbjct:    2 ASPDLLFNLRNLFYLGAYQAAINNSDVPGLDADAAAERDAIVFRSYVALGSYQLVISEIDSSAATSLQAVKLLALYLSG--DKESAIVSLKEWLSDSAVGSNPVLRLIAGIIFMHEQDYTEALKHTHSGGTLDLHALNVQIFIKMHRSDYAEKQLKIMQQIDEDHTLTQLANAWLDIAVGGSKIREAYLIFQDFAEKYPMTGMVLNGKAVCCMHMGSFDEAETLLLEALNKDAKDPETLANLIVCNLH 247          
BLAST of CX069972 vs. ExPASy Swiss-Prot
Match: COPE2_ORYSJ (Coatomer subunit epsilon-2 OS=Oryza sativa subsp. japonica GN=Os04g0644700 PE=3 SV=1)

HSP 1 Score: 318.161 bits (814), Expect = 3.078e-86
Identity = 166/254 (65.35%), Postives = 192/254 (75.59%), Query Frame = 3
Query:    3 AAAPDHLFNLRNNFYLGAYQAAINNSDL----TNLPPDDAVERDCLVYRSYIALGSYQLVISEIDESAATPLQAVKLLALYLSS-PDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGXXXXXXXXXXXXPETLANLVVCSLH 749
            AA+PDHLF LRN+FY+GAYQA I           L PD   ERD L+YRSYIA+GS+QLVI EI   AATPLQAV+LL +YLS     KES I  L E L+D A+GSN  LRL+AG + MHE DY  ALKHTN+GGTMEL A+NVQI L+MHRSD+AE+QLR MQQ+DEDHTLTQLANAW++L +GGSKIQEA+LIFQD SEKYP T LILNGKA+C MHMGNF++AEG             ETLANLVVCSL+
Sbjct:    4 AASPDHLFGLRNSFYVGAYQAVITGVQAIPARAALSPDALAERDSLLYRSYIAIGSHQLVIDEIGPGAATPLQAVRLLTVYLSGGAGGKESAIRKLNELLADDAVGSNPILRLVAGTVLMHERDYAGALKHTNSGGTMELLAMNVQICLQMHRSDHAEKQLRIMQQLDEDHTLTQLANAWVDLVMGGSKIQEAHLIFQDLSEKYPATCLILNGKALCLMHMGNFEDAEGLLLESLNKDAKDAETLANLVVCSLN 257          
BLAST of CX069972 vs. ExPASy Swiss-Prot
Match: COPE2_ORYSI (Coatomer subunit epsilon-2 OS=Oryza sativa subsp. indica GN=H0413E07.10 PE=3 SV=2)

HSP 1 Score: 316.62 bits (810), Expect = 8.955e-86
Identity = 166/254 (65.35%), Postives = 192/254 (75.59%), Query Frame = 3
Query:    3 AAAPDHLFNLRNNFYLGAYQAAINNSDL----TNLPPDDAVERDCLVYRSYIALGSYQLVISEIDESAATPLQAVKLLALYLSS-PDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGXXXXXXXXXXXXPETLANLVVCSLH 749
            AA+PDHLF LR +FY+GAYQA I           L PD   ERD L+YRSYIA+GS+QLVI EI   AATPLQAV+LLA+YLS     KES I  L E L+D A+GSN  LRL+AG + MHE DY  ALKHTN+GGTMEL A+NVQI L+MHRSD+AE+QLR MQQ+DEDHTLTQLANAW++L +GGSKIQEA+LIFQD SEKYP T LILNGKA+C MHMGNF++AEG             ETLANLVVCSL+
Sbjct:    4 AASPDHLFGLRYSFYVGAYQAVITGVQAIPARAALSPDALAERDSLLYRSYIAIGSHQLVIDEIGPGAATPLQAVRLLAVYLSGGAGGKESAIRKLNELLADDAVGSNPILRLVAGTVLMHERDYAGALKHTNSGGTMELLAMNVQICLQMHRSDHAEKQLRIMQQLDEDHTLTQLANAWVDLVMGGSKIQEAHLIFQDLSEKYPATCLILNGKALCLMHMGNFEDAEGLLLESLNKDAKDAETLANLVVCSLN 257          
BLAST of CX069972 vs. ExPASy Swiss-Prot
Match: COPE_CHICK (Coatomer subunit epsilon OS=Gallus gallus GN=COPE PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 3.215e-51
Identity = 104/246 (42.28%), Postives = 158/246 (64.23%), Query Frame = 3
Query:   15 DHLFNLRNNFYLGAYQAAINNSD-LTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDESAATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGXXXXXXXXXXXXPETLANLVVCSLH 749
            D LF+++N+FY+GAYQAAIN +  +    P+   ERD  ++RSYIA   Y +V+ EI  +A+  LQAV++ A YLS+   +++ ++ L + ++     +N T  L+A  I+ H+++ + AL+  + G ++E  A+ +QI LK+ R D A ++L+ MQ+ DED TLTQLA AW+NLA+GG K+Q+AY IFQ+ ++K   T L+LNG+A C M  G +D+AEG            PETL N VV S H
Sbjct:   17 DELFDVKNSFYIGAYQAAINEAQRIKPSNPEKETERDVFLFRSYIAQRKYGVVLDEIKANASPELQAVRMFAEYLSNESQRDAIVADLDKKMAKSVDVANTTFLLMAASIYFHDKNPDAALRTLHQGESLECMAMMIQILLKLDRLDLARKELKKMQEQDEDATLTQLATAWVNLAIGGEKLQDAYYIFQEMADKCSSTLLLLNGQAACYMAQGKWDDAEGVLQEALDKDSGHPETLINFVVLSQH 262          
BLAST of CX069972 vs. ExPASy Swiss-Prot
Match: COPE_CRIGR (Coatomer subunit epsilon OS=Cricetulus griseus GN=COPE PE=2 SV=2)

HSP 1 Score: 197.978 bits (502), Expect = 4.642e-50
Identity = 104/246 (42.28%), Postives = 153/246 (62.20%), Query Frame = 3
Query:   15 DHLFNLRNNFYLGAYQAAINNSDLTNLP-PDDAVERDCLVYRSYIALGSYQLVISEIDESAATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGXXXXXXXXXXXXPETLANLVVCSLH 749
            D LF+++N FY+G+YQ  IN +    L  PD  VERD  +YR+YIA   Y +V+ EI  S+A  LQAV++ A YL++ + +++ +  L   +S     +N T  L+A  ++ H+++ + AL+  + G ++E  A+ +QI LK+ R D A ++L+ MQ  DED TLTQLA AW+NLAVGG K+QEAY IFQ+ ++K   T L+LNG+A C    G ++ AEG            PETL NL+V S H
Sbjct:   17 DELFDVKNAFYIGSYQQCINEAQRVKLSSPDREVERDVFLYRAYIAQRKYGVVLDEIKPSSAPELQAVRMFADYLATENRRDAIVVELDREMSRSVDVTNTTFLLMAASVYFHDQNPDAALRTLHQGDSLECMAMTIQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVNLAVGGEKLQEAYYIFQELADKCSPTLLLLNGQAACHSAQGRWETAEGVLQEALDKDSGHPETLINLIVLSQH 262          
BLAST of CX069972 vs. ExPASy Swiss-Prot
Match: COPE_MOUSE (Coatomer subunit epsilon OS=Mus musculus GN=Cope PE=2 SV=3)

HSP 1 Score: 197.593 bits (501), Expect = 6.063e-50
Identity = 105/246 (42.68%), Postives = 152/246 (61.79%), Query Frame = 3
Query:   15 DHLFNLRNNFYLGAYQAAINNSDLTNLP-PDDAVERDCLVYRSYIALGSYQLVISEIDESAATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGXXXXXXXXXXXXPETLANLVVCSLH 749
            D LF+++N FY+G+YQ  IN +    L  P+  VERD  +YR+Y+A   Y +V+ EI  S+A  LQAV++ A YL+S + ++S +  L   +S     +N T  L+A  I+ H+++ + AL+  + G  +E  A+ +QI LK+ R D A ++L+ MQ  DED TLTQLA AW+NLAVGG K+QEAY IFQ+ ++K   T L+LNG+A C    G ++ AEG            PETL NL+V S H
Sbjct:   17 DELFDVKNAFYIGSYQQCINEAQRVKLSSPEREVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASENQRDSIVLELDREMSRSVDVTNTTFLLMAASIYFHDQNPDAALRTLHQGDGLECMAMTIQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVNLAVGGEKLQEAYYIFQELADKCSPTLLLLNGQAACHSAQGRWETAEGVLQEALDKDSGHPETLINLIVLSQH 262          
BLAST of CX069972 vs. ExPASy Swiss-Prot
Match: COPE_PONAB (Coatomer subunit epsilon OS=Pongo abelii GN=COPE PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.034e-49
Identity = 102/246 (41.46%), Postives = 154/246 (62.60%), Query Frame = 3
Query:   15 DHLFNLRNNFYLGAYQAAINNSDLTNLP-PDDAVERDCLVYRSYIALGSYQLVISEIDESAATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGXXXXXXXXXXXXPETLANLVVCSLH 749
            D LF+++N FY+G+YQ  IN +    L  P+  VERD  +YR+Y+A   + +V+ EI  S+A  LQAV++ A YL+    ++S ++ L   +S     +N T  L+A  I++H+++ + AL+  + G ++E  A+ VQI LK+ R D A ++L+ MQ +DED TLTQLA AW++LA GG K+Q+AY IFQ+ ++K   T L+LNG+A C M  G ++ AEG            PETL NL+V S H
Sbjct:   17 DELFDVKNAFYIGSYQQCINEAQRVKLSSPETDVERDVFLYRAYLAQRKFGVVLDEIKPSSAPELQAVRMFADYLAHESRRDSIVAELDREMSRSVDVTNTTFLLMAASIYLHDQNPDAALRALHQGDSLECTAMTVQILLKLDRLDLARKELKRMQDLDEDATLTQLATAWVSLATGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGLLQEALDKDSGYPETLVNLIVLSQH 262          
BLAST of CX069972 vs. ExPASy Swiss-Prot
Match: COPE_HUMAN (Coatomer subunit epsilon OS=Homo sapiens GN=COPE PE=1 SV=3)

HSP 1 Score: 196.438 bits (498), Expect = 1.351e-49
Identity = 102/246 (41.46%), Postives = 154/246 (62.60%), Query Frame = 3
Query:   15 DHLFNLRNNFYLGAYQAAINNSDLTNLP-PDDAVERDCLVYRSYIALGSYQLVISEIDESAATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGXXXXXXXXXXXXPETLANLVVCSLH 749
            D LF+++N FY+G+YQ  IN +    L  P+  VERD  +YR+Y+A   + +V+ EI  S+A  LQAV++ A YL+    ++S ++ L   +S     +N T  L+A  I++H+++ + AL+  + G ++E  A+ VQI LK+ R D A ++L+ MQ +DED TLTQLA AW++LA GG K+Q+AY IFQ+ ++K   T L+LNG+A C M  G ++ AEG            PETL NL+V S H
Sbjct:   17 DELFDVKNAFYIGSYQQCINEAQRVKLSSPERDVERDVFLYRAYLAQRKFGVVLDEIKPSSAPELQAVRMFADYLAHESRRDSIVAELDREMSRSVDVTNTTFLLMAASIYLHDQNPDAALRALHQGDSLECTAMTVQILLKLDRLDLARKELKRMQDLDEDATLTQLATAWVSLATGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGLLQEALDKDSGYPETLVNLIVLSQH 262          
The following BLAST results are available for this feature:
BLAST of CX069972 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
COPE1_ARATH4.868e-11681.85Coatomer subunit epsilon-1 OS=Arabidopsis thaliana... [more]
COPE2_ARATH1.850e-11582.66Coatomer subunit epsilon-2 OS=Arabidopsis thaliana... [more]
COPE1_ORYSJ2.960e-10576.61Coatomer subunit epsilon-1 OS=Oryza sativa subsp. ... [more]
COPE2_ORYSJ3.078e-8665.35Coatomer subunit epsilon-2 OS=Oryza sativa subsp. ... [more]
COPE2_ORYSI8.955e-8665.35Coatomer subunit epsilon-2 OS=Oryza sativa subsp. ... [more]
COPE_CHICK3.215e-5142.28Coatomer subunit epsilon OS=Gallus gallus GN=COPE ... [more]
COPE_CRIGR4.642e-5042.28Coatomer subunit epsilon OS=Cricetulus griseus GN=... [more]
COPE_MOUSE6.063e-5042.68Coatomer subunit epsilon OS=Mus musculus GN=Cope P... [more]
COPE_PONAB1.034e-4941.46Coatomer subunit epsilon OS=Pongo abelii GN=COPE P... [more]
COPE_HUMAN1.351e-4941.46Coatomer subunit epsilon OS=Homo sapiens GN=COPE P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_14A06_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14A06-A12-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069972 ID=CX069972; Name=CX069972; organism=Citrus sinensis; type=EST; length=749bp
CGGCAGCAGCACCAGATCACTTGTTCAATCTGAGAAACAACTTCTACTTG
GGGGCGTATCAGGCCGCTATCAACAACAGCGACCTCACCAATCTTCCACC
AGACGACGCCGTTGAGCGTGACTGCCTCGTCTACCGCTCTTACATTGCCC
TTGGCAGTTACCAGCTTGTGATCAGTGAGATCGATGAGTCGGCTGCTACT
CCTCTCCAAGCCGTGAAGTTGCTTGCTCTCTATCTCTCTAGCCCTGACAA
CAAGGAATCAACAATTTCAAGTTTAAAAGAGTGGTTGTCAGATCCAGCCA
TTGGGAGCAATGCGACATTACGCTTGATTGCTGGTATCATATTCATGCAT
GAAGAGGATTATAATGAGGCACTCAAACACACCAATGCTGGAGGGACCAT
GGAATTACATGCATTGAATGTCCAAATATTCCTTAAGATGCACAGGTCTG
ACTATGCAGAGAGACAGCTGAGGGCCATGCAACAGATTGATGAGGACCAC
ACCCTAACTCAACTTGCAAATGCTTGGTTGAATTTGGCAGTGGGTGGTTC
CAAGATACAGGAAGCATATCTCATCTTTCAAGATTTCTCTGAGAAGTATC
CAATGACAGGGTTGATCTTGAATGGAAAGGCTGTTTGCTGCATGCATATG
GGGAACTTTGATGAAGCTGAAGGATTGTTGCTTGATGCACTCAACAAGGA
TGCTAAAGATCCAGAAACTCTTGCCAACCTGGTTGTATGCAGTCTTCAC
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