DR404139

Overview
NameDR404139
Unique NameDR404139
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length763
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR404139 vs. ExPASy Swiss-Prot
Match: ARP6_ARATH (Actin-related protein 6 OS=Arabidopsis thaliana GN=ARP6 PE=1 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 1.347e-68
Identity = 129/190 (67.89%), Postives = 154/190 (81.05%), Query Frame = 1
Query:  193 PVFQNFTVNYAVKRIDLGGKALTNYLKELVSYRAINVMDETFIIDDVKEKLCFVSLDVARDLQIARKRGKDNLLRCTYVLPDGVTHTKGFVKDPDAAQRYLSLSDGSRSQPSETVKDMDRTEVMEEARDRKRADLAKNEFDLTNERFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESII 762
            PV  NFT+N+A+KRIDLGGKA TNYLKELVSYR+INVMDETF++DD KEKLCFVSLD+ RDL++A  R  + L++ TYVLPDGVTHTKG+VKDP AA+R+LSLS            + +   VM++  +RK+AD+ KNE DLTNERFLVPE +FQPADLGMNQAGLAECIVRA+NSCH YL  VLY+SII
Sbjct:  168 PVLHNFTLNHAIKRIDLGGKAFTNYLKELVSYRSINVMDETFLVDDAKEKLCFVSLDLLRDLRLA--RNGNTLIKSTYVLPDGVTHTKGYVKDPQAAKRFLSLS------------EKESVVVMDKVGERKKADMNKNEIDLTNERFLVPETLFQPADLGMNQAGLAECIVRAINSCHSYLQPVLYQSII 343          

HSP 2 Score: 89.7373 bits (221), Expect = 1.833e-17
Identity = 40/46 (86.96%), Postives = 42/46 (91.30%), Query Frame = 3
Query:   48 MSNIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSP 185
            MSNIVVLDNGGGLIKAG GGERDP   IPNC+Y+PLSSKKFIHPSP
Sbjct:    1 MSNIVVLDNGGGLIKAGQGGERDPTTVIPNCLYKPLSSKKFIHPSP 46          
BLAST of DR404139 vs. ExPASy Swiss-Prot
Match: ARP6_ORYSJ (Actin-related protein 6 OS=Oryza sativa subsp. japonica GN=ARP6 PE=2 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 1.821e-65
Identity = 128/214 (59.81%), Postives = 158/214 (73.83%), Query Frame = 1
Query:  121 PSQYPTACTVHSPPKNSSTHLPPPPVFQNFTVNYAVKRIDLGGKALTNYLKELVSYRAINVMDETFIIDDVKEKLCFVSLDVARDLQIARKRGKDNLLRCTYVLPDGVTHTKGFVKDPDAAQRYLSLSDGSRSQPSETVKDMDRTEVMEEARDRKRADLAKNEFDLTNERFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESII 762
            PS +   C++      S TH  P  V QNFT+NYAV+R+DLGGKALTNYLKEL+SYR++NVMDET +IDD KEKLCFVSLDV  DL++AR    DN  RC+Y+LPDG+T+ KGFVKD D A RY SL     S   ++  D DR++      D+K+ +L++NEF LTNERFLVPEM+F P DLGMNQAGLAECIVRA+ +CHP+L  VL+E II
Sbjct:  145 PSLFRAQCSLVVDCGFSFTHASP--VLQNFTLNYAVRRMDLGGKALTNYLKELISYRSLNVMDETLLIDDAKEKLCFVSLDVPGDLRLARLSSNDNPFRCSYILPDGITYKKGFVKDLDEACRYSSLPANGESVRKDS-SDSDRSKF----EDKKKPELSQNEFVLTNERFLVPEMLFHPIDLGMNQAGLAECIVRAIQACHPHLQPVLFERII 351          
BLAST of DR404139 vs. ExPASy Swiss-Prot
Match: ARP6_ORYSI (Actin-related protein 6 OS=Oryza sativa subsp. indica GN=ARP6 PE=2 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 1.821e-65
Identity = 128/214 (59.81%), Postives = 158/214 (73.83%), Query Frame = 1
Query:  121 PSQYPTACTVHSPPKNSSTHLPPPPVFQNFTVNYAVKRIDLGGKALTNYLKELVSYRAINVMDETFIIDDVKEKLCFVSLDVARDLQIARKRGKDNLLRCTYVLPDGVTHTKGFVKDPDAAQRYLSLSDGSRSQPSETVKDMDRTEVMEEARDRKRADLAKNEFDLTNERFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESII 762
            PS +   C++      S TH  P  V QNFT+NYAV+R+DLGGKALTNYLKEL+SYR++NVMDET +IDD KEKLCFVSLDV  DL++AR    DN  RC+Y+LPDG+T+ KGFVKD D A RY SL     S   ++  D DR++      D+K+ +L++NEF LTNERFLVPEM+F P DLGMNQAGLAECIVRA+ +CHP+L  VL+E II
Sbjct:  145 PSLFRAQCSLVVDCGFSFTHASP--VLQNFTLNYAVRRMDLGGKALTNYLKELISYRSLNVMDETLLIDDAKEKLCFVSLDVPGDLRLARLSSNDNPFRCSYILPDGITYKKGFVKDLDEACRYSSLPANGESVRKDS-SDSDRSKF----EDKKKPELSQNEFVLTNERFLVPEMLFHPIDLGMNQAGLAECIVRAIQACHPHLQPVLFERII 351          
BLAST of DR404139 vs. ExPASy Swiss-Prot
Match: ARP6_DICDI (Actin-related protein 6 OS=Dictyostelium discoideum GN=arpF PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.902e-30
Identity = 81/216 (37.50%), Postives = 123/216 (56.94%), Query Frame = 1
Query:  169 SSTHLPPPPVFQNFTVNYAVKRIDLGGKALTNYLKELVSYRAINVMDETFIIDDVKEKLCFVSLDVARDLQIARKRGKDNLLRCTYVLP--DGVTHTKGFVKDPDAAQRYLSLSDGSRSQPSETVKDMDRTEVMEEARDRKRADLAKNE----------------FDLTNERFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESII 762
            SSTH+ P   FQN  +NYA+KR ++GGK LTNYLKE+VS+R  ++M ET +++ +KEK CF+S D   D++ ++    ++ L+  YVLP  +   +  G++K+        +  +   +   E  KD +  +  EE  + K  D  K +                  L NERF VPE++F P+D+GMNQAGLAE IV+++N  +  LH  LY +II
Sbjct:  200 SSTHIIPH--FQNTRLNYAIKRFNIGGKLLTNYLKEIVSFRYWDMMHETKLMNTIKEKTCFISKDFIFDIKRSQIDKLNSNLKIDYVLPNYNDPNNKTGYIKENLNNNNNNNDKNDKLNVNIEKDKDNNDIKSKEEGEEIKLNDEIKKDSTTTTNTTKEEDMEQVLSLVNERFTVPELLFNPSDIGMNQAGLAESIVQSINCTNSNLHIPLYSNII 413          
BLAST of DR404139 vs. ExPASy Swiss-Prot
Match: ARP6_ASPFU (Actin-like protein arp6 OS=Aspergillus fumigatus GN=arp6 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.331e-26
Identity = 77/207 (37.20%), Postives = 115/207 (55.56%), Query Frame = 1
Query:  175 THLPPPPVFQNFTVNYAVKRIDLGGKALTNYLKELVSYRAINVMDETFIIDDVKEKLCFVSLDVARDL----QIARKRGKDNL---LRCTYVLPDGVTHTKGFVK--DP--DAAQRYLSLSDGSRSQPSETVKDMDRTEVMEEARDRKRADLAKNEFDLTNERFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESII 762
            +H    PV++   +  A++R+D+GGK LTNYLKE+VS R  N++DET+I+++VKE +CFVS + A DL    Q  RKRG  +    +   YVLPD  T  KGF++  DP  +A +R   LS G+    SE V                          L NERF VPE++F P+D+GM QAG+ + I+++++     LH     +++
Sbjct:  205 SHTTVTPVYKGQPIQRAIRRLDIGGKHLTNYLKEMVSMRQYNMVDETYIMNEVKEAVCFVSNNFAGDLEQTWQGNRKRGLTDAAEGITVDYVLPDPNTGKKGFMRPHDPLSNAKKRKSILSGGNAEALSEDV------------------------LILGNERFTVPEILFTPSDIGMKQAGIPDIILQSLSVLPTGLHPSFLANVL 387          
BLAST of DR404139 vs. ExPASy Swiss-Prot
Match: ARP6_MOUSE (Actin-related protein 6 OS=Mus musculus GN=Actr6 PE=2 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 8.269e-26
Identity = 64/180 (35.56%), Postives = 102/180 (56.67%), Query Frame = 1
Query:  223 AVKRIDLGGKALTNYLKELVSYRAINVMDETFIIDDVKEKLCFVSLDVARDLQIARKRGKDNLLRCTYVLPDGVTHTKGFVKDPDAAQRYLSLSDGSRSQPSETVKDMDRTEVMEEARDRKRADLAKNEFDLTNERFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESII 762
            A+ RI++GGK LTN+LKE++SYR ++VMDET +I+ VKE +C+VS D  RD+ IA+ +G+DN +   YVLPD  T  KGF K                           R E++   + +    + +    L NERF VPE++F P+D+G+ + G+ E IV ++ +    +    +++I+
Sbjct:  169 AIIRINVGGKLLTNHLKEIISYRQLHVMDETHVINQVKEDVCYVSQDFYRDMDIAKLKGEDNTVMIDYVLPDFSTIKKGFCK--------------------------PREEMVLSGKYKSGEQILR----LANERFAVPEILFNPSDIGIQEMGIPEAIVYSIQNLPEEMQPHFFKNIV 318          
BLAST of DR404139 vs. ExPASy Swiss-Prot
Match: ARP6_CHICK (Actin-related protein 6 OS=Gallus gallus GN=ACTR6 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.080e-25
Identity = 63/180 (35.00%), Postives = 104/180 (57.78%), Query Frame = 1
Query:  223 AVKRIDLGGKALTNYLKELVSYRAINVMDETFIIDDVKEKLCFVSLDVARDLQIARKRGKDNLLRCTYVLPDGVTHTKGFVKDPDAAQRYLSLSDGSRSQPSETVKDMDRTEVMEEARDRKRADLAKNEFDLTNERFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESII 762
            A+ RI++GGK LTN+LKE++SYR ++VMDET +I+ VKE +C+VS D  +D++IA+ +G++N +   YVLPD  T  KGF K                           R E++   + +    + +    LTNERF VPE++F P+D+G+ + G+ E IV ++ +    +    +++I+
Sbjct:  169 AIIRINVGGKLLTNHLKEIISYRQLHVMDETHVINQVKEDVCYVSQDFYKDMEIAKLKGEENTVMVDYVLPDFSTIKKGFCK--------------------------PREEMVLSGKYKTGEQILR----LTNERFAVPEILFHPSDIGIQEMGIPEAIVDSIQNLPEEMQPHFFKNIV 318          
BLAST of DR404139 vs. ExPASy Swiss-Prot
Match: ARP6_HUMAN (Actin-related protein 6 OS=Homo sapiens GN=ACTR6 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.406e-25
Identity = 63/180 (35.00%), Postives = 102/180 (56.67%), Query Frame = 1
Query:  223 AVKRIDLGGKALTNYLKELVSYRAINVMDETFIIDDVKEKLCFVSLDVARDLQIARKRGKDNLLRCTYVLPDGVTHTKGFVKDPDAAQRYLSLSDGSRSQPSETVKDMDRTEVMEEARDRKRADLAKNEFDLTNERFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESII 762
            A+ RI++GGK LTN+LKE++SYR ++VMDET +I+ VKE +C+VS D  RD+ IA+ +G++N +   YVLPD  T  KGF K                           R E++   + +    + +    L NERF VPE++F P+D+G+ + G+ E IV ++ +    +    +++I+
Sbjct:  169 AIIRINVGGKLLTNHLKEIISYRQLHVMDETHVINQVKEDVCYVSQDFYRDMDIAKLKGEENTVMIDYVLPDFSTIKKGFCK--------------------------PREEMVLSGKYKSGEQILR----LANERFAVPEILFNPSDIGIQEMGIPEAIVYSIQNLPEEMQPHFFKNIV 318          
BLAST of DR404139 vs. ExPASy Swiss-Prot
Match: ARP6_SCHPO (Actin-like protein arp6 OS=Schizosaccharomyces pombe GN=arp6 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.474e-24
Identity = 61/198 (30.81%), Postives = 110/198 (55.56%), Query Frame = 1
Query:  169 SSTHLPPPPVFQNFTVNYAVKRIDLGGKALTNYLKELVSYRAINVMDETFIIDDVKEKLCFVSLDVARDLQIARKRGKDNLLRCTYVLPDGVTHTKGFVKDPDAAQRYLSLSDGSRSQPSETVKDMDRTEVMEEARDRKRADLAKNEFDLTNERFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESII 762
            S TH+ P  V        AVKR+D+GGK LTNYLKE++SYR  N+M+ET+I++++KE +C+VS +   D++I  ++ +  L  C Y LPD  T   G++                       V+D+++              + +   +L+NERF++PE++F P+D+ + +AG+ E ++++V      + ++L E+++
Sbjct:  166 SFTHIIP--VIDFSVQEQAVKRVDVGGKLLTNYLKEVISYRKYNMMEETYIVNEIKESVCYVSQNFKEDMEICHEKPRSKLEIC-YALPDYSTGKHGYI-----------------------VRDINQ-------------KIEQQVLNLSNERFMIPELLFSPSDIEIREAGIPEAVMQSVTHFPENIQAMLLENVV 324          
BLAST of DR404139 vs. ExPASy Swiss-Prot
Match: ARP6_EMENI (Actin-like protein arp6 OS=Emericella nidulans GN=arp6 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.926e-24
Identity = 72/207 (34.78%), Postives = 111/207 (53.62%), Query Frame = 1
Query:  175 THLPPPPVFQNFTVNYAVKRIDLGGKALTNYLKELVSYRAINVMDETFIIDDVKEKLCFVSLDVARDLQIA----RKRGKDNL---LRCTYVLPDGVTHTKGFVKDPD----AAQRYLSLSDGSRSQPSETVKDMDRTEVMEEARDRKRADLAKNEFDLTNERFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESII 762
            +H    PV++   +   ++R+DLGGK LTNYLKELVS R  N++DET+I+++VKE +CFVS D  RDL+      RKRG+ +    +   YVLPD     +GF++  D    + +R   L+  S  Q +E V                          L NERF VPE++F P+D+GM  AG+ + I+++++     LH     +++
Sbjct:  216 SHTVITPVYRGRPLQRGIRRLDLGGKHLTNYLKELVSMRQYNMVDETYIMNEVKESVCFVSNDFNRDLERTWKGNRKRGQPDPTDGVVVDYVLPDPNGGKRGFMRPHDPLLGSKKRKAVLAGASAEQLNEDV------------------------LVLGNERFTVPEILFTPSDIGMKSAGIPDIILQSLSVLPTGLHPAFLANVL 398          
The following BLAST results are available for this feature:
BLAST of DR404139 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
ARP6_ARATH1.347e-6867.89Actin-related protein 6 OS=Arabidopsis thaliana GN... [more]
ARP6_ORYSJ1.821e-6559.81Actin-related protein 6 OS=Oryza sativa subsp. jap... [more]
ARP6_ORYSI1.821e-6559.81Actin-related protein 6 OS=Oryza sativa subsp. ind... [more]
ARP6_DICDI1.902e-3037.50Actin-related protein 6 OS=Dictyostelium discoideu... [more]
ARP6_ASPFU6.331e-2637.20Actin-like protein arp6 OS=Aspergillus fumigatus G... [more]
ARP6_MOUSE8.269e-2635.56Actin-related protein 6 OS=Mus musculus GN=Actr6 P... [more]
ARP6_CHICK1.080e-2535.00Actin-related protein 6 OS=Gallus gallus GN=ACTR6 ... [more]
ARP6_HUMAN2.406e-2535.00Actin-related protein 6 OS=Homo sapiens GN=ACTR6 P... [more]
ARP6_SCHPO3.474e-2430.81Actin-like protein arp6 OS=Schizosaccharomyces pom... [more]
ARP6_EMENI5.926e-2434.78Actin-like protein arp6 OS=Emericella nidulans GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCSAG-PNP1245G08 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone CSAG-PNP1245G08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404139 ID=DR404139; Name=DR404139; organism=Citrus sinensis; type=EST; length=763bp
GGGGACTCAAATGTAACAATTCCAGCACCCACATCTCATCCTCGGAGATG
TCAAATATCGTCGTTCTAGACAATGGTGGCGGCCTCATAAAAGCGGGTCA
TGGCGGCGAGCGTGACCCCGCCGTCACAATACCCAACTGCATGTACCGTC
CACTCTCCTCCAAAAAATTCATCCACCCATCTCCCACCGCCGCCGGTGTT
TCAGAATTTCACGGTGAATTACGCCGTTAAAAGGATTGACTTGGGCGGTA
AGGCGTTGACTAATTACTTGAAGGAGCTGGTATCGTATCGCGCTATTAAC
GTTATGGATGAGACTTTCATTATCGATGATGTTAAGGAGAAGTTGTGCTT
TGTCTCCCTCGATGTCGCGCGTGATCTTCAAATTGCCAGGAAACGCGGTA
AGGACAATCTTTTGCGTTGCACATATGTCCTTCCTGATGGTGTTACACAC
ACTAAGGGCTTTGTTAAAGACCCTGATGCCGCTCAGAGGTATCTTAGTCT
GAGTGACGGATCTCGATCTCAACCATCAGAGACGGTGAAGGATATGGATC
GGACAGAGGTTATGGAGGAGGCTAGGGACAGAAAGAGAGCTGATTTGGCA
AAAAATGAGTTTGACTTGACAAATGAACGCTTTCTTGTCCCAGAGATGAT
CTTTCAACCTGCAGATTTGGGAATGAACCAGGCTGGACTAGCTGAGTGCA
TTGTTCGAGCTGTTAATTCTTGCCATCCTTATCTTCATTCTGTACTTTAT
GAAAGCATTATAT
back to top