CX069952

Overview
NameCX069952
Unique NameCX069952
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length329
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7909 contig Csv1_Contig7909:650..979. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX069952 vs. ExPASy Swiss-Prot
Match: PSAEB_NICSY (Photosystem I reaction center subunit IV B, chloroplastic OS=Nicotiana sylvestris GN=PSAEB PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.616e-13
Identity = 33/37 (89.19%), Postives = 36/37 (97.30%), Query Frame = 1 
Query:   16 LDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEVK 126
            +DQDP +RYPVVVRFNKVNYANVSTNNYALDE+EEVK
Sbjct:  107 VDQDPNTRYPVVVRFNKVNYANVSTNNYALDEVEEVK 143
[Close]
BLAST of CX069952 vs. ExPASy Swiss-Prot
Match: PSAEA_NICSY (Photosystem I reaction center subunit IV A, chloroplastic OS=Nicotiana sylvestris GN=PSAEA PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.616e-13
Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = 1 
Query:   19 DQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEVK 126
            DQDP +RYPVVVRFNKVNYANVSTNNYALDEIEEVK
Sbjct:  106 DQDPNTRYPVVVRFNKVNYANVSTNNYALDEIEEVK 141
[Close]
BLAST of CX069952 vs. ExPASy Swiss-Prot
Match: PSAE_SPIOL (Photosystem I reaction center subunit IV, chloroplastic OS=Spinacia oleracea GN=PSAE-1 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.169e-13
Identity = 33/36 (91.67%), Postives = 36/36 (100.00%), Query Frame = 1 
Query:   16 LDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEV 123
            +DQDPK+RYPVVVRFNKVNYANVSTNNYALDEI+EV
Sbjct:   89 VDQDPKTRYPVVVRFNKVNYANVSTNNYALDEIQEV 124
[Close]
BLAST of CX069952 vs. ExPASy Swiss-Prot
Match: PSAE2_ARATH (Photosystem I reaction center subunit IV B, chloroplastic OS=Arabidopsis thaliana GN=PSAE2 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.052e-12
Identity = 32/37 (86.49%), Postives = 36/37 (97.30%), Query Frame = 1 
Query:   16 LDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEVK 126
            +DQDPK+RYPVVVRF KVNYAN+STNNYALDE+EEVK
Sbjct:  109 VDQDPKTRYPVVVRFAKVNYANISTNNYALDEVEEVK 145
[Close]
BLAST of CX069952 vs. ExPASy Swiss-Prot
Match: PSAE1_ARATH (Photosystem I reaction center subunit IV A, chloroplastic OS=Arabidopsis thaliana GN=PSAE1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.999e-12
Identity = 31/36 (86.11%), Postives = 35/36 (97.22%), Query Frame = 1 
Query:   16 LDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEV 123
            +DQDPK+RYPVVVRF KVNYAN+STNNYALDE+EEV
Sbjct:  106 VDQDPKTRYPVVVRFAKVNYANISTNNYALDEVEEV 141
The following BLAST results are available for this feature:
BLAST of CX069952 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
PSAEB_NICSY3.616e-1389.19Photosystem I reaction center subunit IV B, chloro... [more]
PSAEA_NICSY3.616e-1394.44Photosystem I reaction center subunit IV A, chloro... [more]
PSAE_SPIOL6.169e-1391.67Photosystem I reaction center subunit IV, chloropl... [more]
PSAE2_ARATH1.052e-1286.49Photosystem I reaction center subunit IV B, chloro... [more]
PSAE1_ARATH3.999e-1286.11Photosystem I reaction center subunit IV A, chloro... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_13H05_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13H05-O9-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069952 ID=CX069952; Name=CX069952; organism=Citrus sinensis; type=EST; length=329bp
GTACCGCGGCCCCCCCTTGACCAGGATCCCAAGAGTCGGTACCCAGTTGT
GGTTCGATTCAACAAGGTTAACTATGCAAATGTATCAACGAACAACTATG
CATTGGATGAGATCGAAGAAGTTAAATGAGTTATGTAATTTTGATTTGCA
TATTATTCCCCGCTCTAGATTAAGCCTTTGTGTGCCAGGAATGTGTATTC
TATTCTCCAAGTGAATTCTTCTTCTGTCTACTTCGCCATCATGTTTATGC
TTATCCAACGAAAAGATGTTCACAACTTATACCGTACGGGCTACGATTAG
GAACTGGTTATTCAAAAAAAAAAAAAAAA
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