CX069949

Overview
NameCX069949
Unique NameCX069949
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length779
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX069949_ssr510 microsatellite CX069949_ssr510:510..524. BLAST: Citrus ESTs to Prunus persica proteins V1
CX069949_ssr612 microsatellite CX069949_ssr612:612..623. BLAST: Citrus ESTs to Prunus persica proteins V1
CX069949_ssr139 microsatellite CX069949_ssr139:139..150. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4686 contig Csv1_Contig4686:658..1436. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX069949 vs. ExPASy Swiss-Prot
Match: ERF58_ARATH (Ethylene-responsive transcription factor ERF058 OS=Arabidopsis thaliana GN=ERF058 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.081e-12
Identity = 32/41 (78.05%), Postives = 33/41 (80.49%), Query Frame = 3 
Query:  657 LSPKPVPMKTVGCPPPKPAKLYRGVRQRHWGKWVAEIRLPK 779
            LSPKPV MK  G    KP KLYRGVRQRHWGKWVAEIRLP+
Sbjct:   62 LSPKPVSMKQTGTSAAKPTKLYRGVRQRHWGKWVAEIRLPR 102
The following BLAST results are available for this feature:
BLAST of CX069949 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ERF58_ARATH4.081e-1278.05Ethylene-responsive transcription factor ERF058 OS... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_13H02_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13H02-O3-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069949 ID=CX069949; Name=CX069949; organism=Citrus sinensis; type=EST; length=779bp
GCTTGGAGGGTTATTTTTGGTCCCTCTCGAAGTTGGTTTTAGGTTCTTGA
ATTCAAGGGGTTGTGTATTTTTAAACCTCTTTGATCTTTTTCAAATCTAA
AGGCCTTGTTCTTTAATTTTGGTGAGAACCAGGGTGTTTTTATTTATTTA
TATTTTATTTTTCTAACAAATTTTACCTAAAGTGTTTGGTTCCAGAAATG
GCGGCTACAATGGATTTCTACAGTAGCAGACCAGTTGAATCATCGTGTGA
TCCGTTTGGTGGTGAACTTATGGAAGCGCTTGAACCTTTTATGAAAAGTG
CTTCTGCTTCTACTTCACCAACTGCTTCTCCCTCTTCTTATTCTTCCTCT
TCTTCTACTCTTCCCCCTTCTACTTCTTATAATTACCAGTCTTACCCACC
TCCTCTTCCAACAATTGCATCACTGTCCAATTTGTTGTATCCTGATGCGT
GCTCCACGTCGTCAACTCATCTATTTGCTAATGGGTTGTCGATGAATGAC
TTAGGTCTCCAGCAGCAGCAGCAGCATTATCAACAGGGCACTGTTGGGCT
AAATAACCTTAACCTATTCCAGATTCAGCAGATCCAGCTTCAAAATCAAA
ACTTTTGGCCACAGCAGCAGCAGAAAAGTCATCTTTACCCTCAGGGTTTG
AACTTCCTCTCCCCGAAGCCAGTCCCGATGAAGACGGTGGGCTGTCCTCC
GCCCAAGCCGGCGAAGCTTTACAGAGGAGTTAGACAGCGTCATTGGGGCA
AATGGGTCGCTGAGATCCGCTTGCCCAAG
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