DR404082

Overview
NameDR404082
Unique NameDR404082
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1398 contig Csv1_Contig1398:1..649. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR404082 vs. ExPASy Swiss-Prot
Match: RL27_PEA (60S ribosomal protein L27 OS=Pisum sativum GN=RPL27 PE=2 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 1.989e-64
Identity = 121/135 (89.63%), Postives = 127/135 (94.07%), Query Frame = 2
Query:   62 MVKFLKPNKAVILLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVRAFVKLVNYQHLMPTRYTLDVDLKDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 466
            MVKFLKPNKAVILLQGRYAG+KAVIVK+FDDGTRE+ YGHCLVAGIKK+P KVI+KDSAKKTAKKSRV+AFVKLVNYQHLMPTRYTLDVDLKD V  D LQSKDKKVTA KETKK LEERFKTGKNRWFFTKLRF
Sbjct:    1 MVKFLKPNKAVILLQGRYAGKKAVIVKTFDDGTREKPYGHCLVAGIKKFPSKVIKKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKDAVVPDVLQSKDKKVTALKETKKSLEERFKTGKNRWFFTKLRF 135          
BLAST of DR404082 vs. ExPASy Swiss-Prot
Match: RL273_ARATH (60S ribosomal protein L27-3 OS=Arabidopsis thaliana GN=RPL27C PE=2 SV=2)

HSP 1 Score: 236.884 bits (603), Expect = 7.073e-62
Identity = 114/135 (84.44%), Postives = 124/135 (91.85%), Query Frame = 2
Query:   62 MVKFLKPNKAVILLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVRAFVKLVNYQHLMPTRYTLDVDLKDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 466
            MVKFLK NKAVILLQGRYAG+KAVI+KSFDDG R+R YGHCLVAG+KKYP KVIRKDSAKKTAKKSRV+ F+KLVNYQHLMPTRYTLDVDLK+V + D+LQSKDKKV A KE K +LEERFKTGKNRWFFTKLRF
Sbjct:    1 MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGNRDRPYGHCLVAGLKKYPSKVIRKDSAKKTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALQSKDKKVAALKEAKAKLEERFKTGKNRWFFTKLRF 135          
BLAST of DR404082 vs. ExPASy Swiss-Prot
Match: RL272_ARATH (60S ribosomal protein L27-2 OS=Arabidopsis thaliana GN=RPL27B PE=2 SV=2)

HSP 1 Score: 236.884 bits (603), Expect = 7.073e-62
Identity = 114/135 (84.44%), Postives = 125/135 (92.59%), Query Frame = 2
Query:   62 MVKFLKPNKAVILLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVRAFVKLVNYQHLMPTRYTLDVDLKDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 466
            MVKFLK NKAVILLQGRYAG+KAVI+KSFDDGT +R YGHCLVAG+KKYP KVIRKDSAKKTAKKSRV+ F+KLVNYQHLMPTRYTLDVDLK+V + D+L+SKDKKVTA KE K +LEERFKTGKNRWFFTKLRF
Sbjct:    1 MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGTSDRRYGHCLVAGLKKYPSKVIRKDSAKKTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALKSKDKKVTALKEAKAKLEERFKTGKNRWFFTKLRF 135          
BLAST of DR404082 vs. ExPASy Swiss-Prot
Match: RL271_ARATH (60S ribosomal protein L27-1 OS=Arabidopsis thaliana GN=RPL27A PE=2 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 3.285e-59
Identity = 109/135 (80.74%), Postives = 122/135 (90.37%), Query Frame = 2
Query:   62 MVKFLKPNKAVILLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVRAFVKLVNYQHLMPTRYTLDVDLKDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 466
            MVK +KP KAVILLQGRY G+KAVIVKSFDDGT E+ YGHCLVAG+KKYP KVIRKDSAKKTAKKSRV+ F K++NYQH+MPTRYTLD+DLK+VVSAD++ SKDKKVTA KE K + EERFKTGKNRWFFTKLRF
Sbjct:    1 MVKCMKPGKAVILLQGRYTGKKAVIVKSFDDGTVEKKYGHCLVAGLKKYPSKVIRKDSAKKTAKKSRVKCFFKVINYQHVMPTRYTLDLDLKNVVSADAISSKDKKVTALKEAKAKFEERFKTGKNRWFFTKLRF 135          
BLAST of DR404082 vs. ExPASy Swiss-Prot
Match: RL27_SOLTU (60S ribosomal protein L27 OS=Solanum tuberosum GN=RPL27 PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 5.799e-56
Identity = 109/139 (78.42%), Postives = 122/139 (87.77%), Query Frame = 2
Query:   62 MVKFLKPNKAVILLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVRAFVKLVNYQHLMPTRYTLDVDL----KDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 466
            M KFLKPNKAVILLQG+YAGRKAVIV++FD+GTR+R YGHCLVAGI +YP KVIRKDSAKK  KKSRV+AF+KLVNY H+MPTRYTLD DL    KDVV+AD LQ++DKKVTA + TK RL ERFKTGKNRWFFTKLRF
Sbjct:    1 MEKFLKPNKAVILLQGKYAGRKAVIVRAFDEGTRDRPYGHCLVAGISRYPKKVIRKDSAKKAGKKSRVKAFIKLVNYNHIMPTRYTLDEDLKDVVKDVVNADVLQARDKKVTA-RRTKARLAERFKTGKNRWFFTKLRF 138          
BLAST of DR404082 vs. ExPASy Swiss-Prot
Match: RL27_PYRST (60S ribosomal protein L27 OS=Pyrobotrys stellata GN=RPL27 PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 5.092e-44
Identity = 87/135 (64.44%), Postives = 106/135 (78.52%), Query Frame = 2
Query:   62 MVKFLKPNKAVILLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVRAFVKLVNYQHLMPTRYTLDVDLKDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 466
            MVKFLK  K V++L GR+AG+KAVIV++FDDGT  R YGH LV G++K P KV ++ S KK AKKS ++ F+K VNY HLMPTRYTLDVD K  V+A++ ++  KKV A KE KK LEE+FKTGKNRWFFTKLRF
Sbjct:    1 MVKFLKSGKVVVVLSGRFAGKKAVIVRNFDDGTSSRPYGHALVVGLQKEPRKVTKRQSQKKQAKKSTLKTFIKTVNYNHLMPTRYTLDVDFKG-VAAEAQENPTKKVEARKECKKLLEEKFKTGKNRWFFTKLRF 134          
BLAST of DR404082 vs. ExPASy Swiss-Prot
Match: RL27_HIPCM (60S ribosomal protein L27 OS=Hippocampus comes GN=rpl27 PE=2 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 1.099e-38
Identity = 79/136 (58.09%), Postives = 99/136 (72.79%), Query Frame = 2
Query:   62 MVKFLKPNKAVILLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVRAFVKLVNYQHLMPTRYTLDVDL-KDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 466
            M KF+KP K V++L GRYAGRKAVIVK+ DDGT +R Y H LVAGI +YP KV      KK AK+S+++AFVK+ NY HLMPTRY++D+ L K VV+ D  +    K  A +E K + EER+KTGKN+WFF KLRF
Sbjct:    1 MGKFMKPGKVVMVLAGRYAGRKAVIVKNIDDGTADRPYSHALVAGIDRYPRKVTAPMGKKKIAKRSKIKAFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKSKARREAKVKFEERYKTGKNKWFFQKLRF 136          
BLAST of DR404082 vs. ExPASy Swiss-Prot
Match: RL27_DANRE (60S ribosomal protein L27 OS=Danio rerio GN=rpl27 PE=2 SV=3)

HSP 1 Score: 159.458 bits (402), Expect = 1.435e-38
Identity = 79/136 (58.09%), Postives = 99/136 (72.79%), Query Frame = 2
Query:   62 MVKFLKPNKAVILLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVRAFVKLVNYQHLMPTRYTLDVDL-KDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 466
            M KF+KP K V++L GRYAGRKAVIVK+ DDGT +R Y H LVAGI +YP KV      KK AK+S+++AFVK+ NY HLMPTRY++D+ L K VV+ D  +    K  A +E K + EER+KTGKN+WFF KLRF
Sbjct:    1 MGKFMKPGKVVMVLAGRYAGRKAVIVKNIDDGTADRPYSHALVAGIDRYPRKVTATMGKKKIAKRSKIKAFVKVFNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136          
BLAST of DR404082 vs. ExPASy Swiss-Prot
Match: RL27_ICTPU (60S ribosomal protein L27 OS=Ictalurus punctatus GN=rpl27 PE=2 SV=3)

HSP 1 Score: 158.303 bits (399), Expect = 3.197e-38
Identity = 77/136 (56.62%), Postives = 99/136 (72.79%), Query Frame = 2
Query:   62 MVKFLKPNKAVILLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVRAFVKLVNYQHLMPTRYTLDVDL-KDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 466
            M KF+KP K V++L GRYAGRKAVIVK+ DDGT +R Y H LV+GI +YP KV      KK AK+S+++AFVK+ NY HLMPTRY++D+ L K +V+ D  +    K  A +E K + EER+KTGKN+WFF KLRF
Sbjct:    1 MGKFMKPGKVVMVLAGRYAGRKAVIVKNIDDGTADRPYSHALVSGIDRYPRKVTATMGKKKVAKRSKIKAFVKVFNYNHLMPTRYSVDIPLDKTIVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136          
BLAST of DR404082 vs. ExPASy Swiss-Prot
Match: RL27_RAT (60S ribosomal protein L27 OS=Rattus norvegicus GN=Rpl27 PE=2 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 5.453e-38
Identity = 77/136 (56.62%), Postives = 99/136 (72.79%), Query Frame = 2
Query:   62 MVKFLKPNKAVILLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVRAFVKLVNYQHLMPTRYTLDVDL-KDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 466
            M KF+KP K V++L GRY+GRKAVIVK+ DDGT +R Y H LVAGI +YP KV      KK AK+S++++FVK+ NY HLMPTRY++D+ L K VV+ D  +    K  A +E K + EER+KTGKN+WFF KLRF
Sbjct:    1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136          
The following BLAST results are available for this feature:
BLAST of DR404082 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RL27_PEA1.989e-6489.6360S ribosomal protein L27 OS=Pisum sativum GN=RPL2... [more]
RL273_ARATH7.073e-6284.4460S ribosomal protein L27-3 OS=Arabidopsis thalian... [more]
RL272_ARATH7.073e-6284.4460S ribosomal protein L27-2 OS=Arabidopsis thalian... [more]
RL271_ARATH3.285e-5980.7460S ribosomal protein L27-1 OS=Arabidopsis thalian... [more]
RL27_SOLTU5.799e-5678.4260S ribosomal protein L27 OS=Solanum tuberosum GN=... [more]
RL27_PYRST5.092e-4464.4460S ribosomal protein L27 OS=Pyrobotrys stellata G... [more]
RL27_HIPCM1.099e-3858.0960S ribosomal protein L27 OS=Hippocampus comes GN=... [more]
RL27_DANRE1.435e-3858.0960S ribosomal protein L27 OS=Danio rerio GN=rpl27 ... [more]
RL27_ICTPU3.197e-3856.6260S ribosomal protein L27 OS=Ictalurus punctatus G... [more]
RL27_RAT5.453e-3856.6260S ribosomal protein L27 OS=Rattus norvegicus GN=... [more]

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Properties
Property NameValue
Genbank descriptionCSAG-PNP1245D18 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone CSAG-PNP1245D18 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404082 ID=DR404082; Name=DR404082; organism=Citrus sinensis; type=EST; length=654bp
GGGGGGCACAAACACACTAAACCCAGAGAGAGCCGCGGGTGNNNNAGGAG
CGAGAGTTGAAATGGTGAAGTTTCTGAAACCAAACAAGGCCGTGATCCTT
CTTCAGGGCCGTTACGCCGGCCGGAAGGCGGTGATCGTGAAGTCGTTCGA
CGACGGGACCCGCGAGAGGGCGTACGGGCACTGTTTGGTAGCGGGGATAA
AGAAGTACCCGGGCAAGGTCATCCGCAAGGACTCGGCGAAGAAGACAGCG
AAGAAGTCACGCGTCAGGGCCTTCGTCAAGTTGGTCAACTACCAGCACCT
GATGCCCACGCGCTACACTCTCGACGTCGATTTGAAGGACGTCGTGTCGG
CCGATTCCCTCCAGAGCAAGGACAAGAAGGTGACCGCTTGCAAGGAGACC
AAGAAGCGCCTCGAGGAGAGGTTTAAGACTGGCAAGAATCGTTGGTTCTT
TACTAAGCTCAGGTTTTAGATTTTTAACCAAAGGAAGAAAACGACTTGTG
TTTTTGTTTTGTTTTATTTTGTGTTATTGAAAACGCTTTAGTTGTTAAAG
TGCGAATTTTGAGATTTATGTAGTTTTTTGTGAACTTAATTTTATTTCTG
GATCTGGTACTATTTTTATGTGATAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAA
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