CX069860

Overview
NameCX069860
Unique NameCX069860
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length847
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12567 contig Csv1_Contig12567:616..1461. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069860 vs. ExPASy Swiss-Prot
Match: THI4_CITSI (Thiazole biosynthetic enzyme, chloroplastic OS=Citrus sinensis GN=THI1 PE=2 SV=1)

HSP 1 Score: 314.309 bits (804), Expect = 1.709e-95
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = -1
Query:  290 FNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELIL 760
            FNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELIL
Sbjct:  189 FNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELIL 345          

HSP 2 Score: 57.3806 bits (137), Expect = 1.709e-95
Identity = 28/29 (96.55%), Postives = 28/29 (96.55%), Query Frame = -3
Query:  759 DNYVVIKHAALFTSIIMSKLLARPNVKLF 845
            DNYVVIKHAALFTS IMSKLLARPNVKLF
Sbjct:  161 DNYVVIKHAALFTSTIMSKLLARPNVKLF 189          
BLAST of CX069860 vs. ExPASy Swiss-Prot
Match: THI4_ALNGL (Thiazole biosynthetic enzyme, chloroplastic OS=Alnus glutinosa GN=THI4 PE=2 SV=1)

HSP 1 Score: 298.901 bits (764), Expect = 7.102e-91
Identity = 147/157 (93.63%), Postives = 153/157 (97.45%), Query Frame = -1
Query:  290 FNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELIL 760
            FNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVK L+SIGMI+ VPGMKALDMN AEDAIVRLTRE+VPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK+LG PNALDG+YVGG+HPELIL
Sbjct:  185 FNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKSLRSIGMIDTVPGMKALDMNVAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGLPNALDGSYVGGIHPELIL 341          

HSP 2 Score: 57.3806 bits (137), Expect = 7.102e-91
Identity = 28/29 (96.55%), Postives = 28/29 (96.55%), Query Frame = -3
Query:  759 DNYVVIKHAALFTSIIMSKLLARPNVKLF 845
            DNYVVIKHAALFTS IMSKLLARPNVKLF
Sbjct:  157 DNYVVIKHAALFTSTIMSKLLARPNVKLF 185          
BLAST of CX069860 vs. ExPASy Swiss-Prot
Match: THI4_ARATH (Thiazole biosynthetic enzyme, chloroplastic OS=Arabidopsis thaliana GN=THI1 PE=1 SV=1)

HSP 1 Score: 281.952 bits (720), Expect = 5.477e-85
Identity = 139/157 (88.54%), Postives = 147/157 (93.63%), Query Frame = -1
Query:  290 FNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELIL 760
            FNAVAAEDLIVKG RVGGVVTNWALV+ NH TQSCMDPNVMEAK+VVSSCGHDGPFGATGVKRLKSIGMI+ VPGMKALDMN+AEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKA  LALK+LG PNA+DGT VG + PEL+L
Sbjct:  182 FNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDHVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAGQLALKALGLPNAIDGTLVGNLSPELVL 338          

HSP 2 Score: 54.6842 bits (130), Expect = 5.477e-85
Identity = 26/29 (89.66%), Postives = 27/29 (93.10%), Query Frame = -3
Query:  759 DNYVVIKHAALFTSIIMSKLLARPNVKLF 845
            D YVV+KHAALFTS IMSKLLARPNVKLF
Sbjct:  154 DTYVVVKHAALFTSTIMSKLLARPNVKLF 182          
BLAST of CX069860 vs. ExPASy Swiss-Prot
Match: THI41_MAIZE (Thiazole biosynthetic enzyme 1-1, chloroplastic OS=Zea mays GN=THI1-1 PE=2 SV=1)

HSP 1 Score: 276.559 bits (706), Expect = 3.224e-82
Identity = 137/157 (87.26%), Postives = 146/157 (92.99%), Query Frame = -1
Query:  290 FNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELIL 760
            FNAVA EDLIV+GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRL+ IGMI  VPGMKALDMN+AED IVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK+LG+PNA+DGT    +  EL++
Sbjct:  188 FNAVAVEDLIVRGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLQDIGMISAVPGMKALDMNTAEDEIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGRPNAVDGTMSPPLREELMI 344          

HSP 2 Score: 50.8322 bits (120), Expect = 3.224e-82
Identity = 24/29 (82.76%), Postives = 27/29 (93.10%), Query Frame = -3
Query:  759 DNYVVIKHAALFTSIIMSKLLARPNVKLF 845
            ++YVVIKHAALFTS +MS LLARPNVKLF
Sbjct:  160 EDYVVIKHAALFTSTVMSLLLARPNVKLF 188          
BLAST of CX069860 vs. ExPASy Swiss-Prot
Match: THI42_MAIZE (Thiazole biosynthetic enzyme 1-2, chloroplastic OS=Zea mays GN=THI1-2 PE=2 SV=1)

HSP 1 Score: 271.552 bits (693), Expect = 4.596e-81
Identity = 134/146 (91.78%), Postives = 140/146 (95.89%), Query Frame = -1
Query:  323 FNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGT 760
            FNAVA EDLIV+ GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRL+ IGMI  VPGMKALDMN+AED IVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK+LG+PNA+DGT
Sbjct:  185 FNAVAVEDLIVRRGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLQDIGMISAVPGMKALDMNAAEDEIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGRPNAVDGT 330          

HSP 2 Score: 51.9878 bits (123), Expect = 4.596e-81
Identity = 23/29 (79.31%), Postives = 28/29 (96.55%), Query Frame = -3
Query:  759 DNYVVIKHAALFTSIIMSKLLARPNVKLF 845
            ++YVV+KHAALFTS +MS+LLARPNVKLF
Sbjct:  157 EDYVVVKHAALFTSTVMSRLLARPNVKLF 185          
BLAST of CX069860 vs. ExPASy Swiss-Prot
Match: THI4_FUSSH (Thiazole biosynthetic enzyme, mitochondrial OS=Fusarium solani subsp. phaseoli GN=STI35 PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 2.530e-51
Identity = 89/139 (64.03%), Postives = 108/139 (77.70%), Query Frame = -1
Query:  356 FNAVAAEDLIVK----GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 760
            FNA   EDLI +    G R+ GVVTNW LVSM+HD QSCMDPN + A +V+S+ GHD P GA  VKRL S+G IE++ GM+ LDMN AEDAIV+ TRE+VPG+IV GME++E+DGA RMGPTFGAM++SG KAA  ALK
Sbjct:  175 FNATCVEDLITRPSKEGVRISGVVTNWTLVSMHHDDQSCMDPNTINAPLVISTTGHDAPMGAFCVKRLVSMGRIEKLGGMRGLDMNVAEDAIVKGTREIVPGLIVGGMELSEVDGANRMGPTFGAMVLSGLKAAEEALK 313          

HSP 2 Score: 46.9802 bits (110), Expect = 2.530e-51
Identity = 22/28 (78.57%), Postives = 24/28 (85.71%), Query Frame = -3
Query:  759 NYVVIKHAALFTSIIMSKLLARPNVKLF 842
            NYVV+KHAALFTS IMSK+L  PN KLF
Sbjct:  148 NYVVVKHAALFTSTIMSKVLQLPNCKLF 175          
BLAST of CX069860 vs. ExPASy Swiss-Prot
Match: THI4_FUSOX (Thiazole biosynthetic enzyme, mitochondrial OS=Fusarium oxysporum GN=STI35 PE=2 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 2.530e-51
Identity = 88/139 (63.31%), Postives = 107/139 (76.98%), Query Frame = -1
Query:  356 FNAVAAEDLIVK----GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 760
            FNA   EDLI +    G R+ GVVTNW LVSM+HD QSCMDPN + A +++S+ GHDGP GA  VKRL S+  IE++ GM+ LDMN AEDAIV+ TRE+VPG+IV GME++E+DGA RMGPTFGAM +SG KAA  ALK
Sbjct:  171 FNATCVEDLITRPSEEGVRIAGVVTNWTLVSMHHDDQSCMDPNTINAPLIISTTGHDGPMGAFCVKRLVSMQRIEKLGGMRGLDMNLAEDAIVKGTREIVPGLIVGGMELSEVDGANRMGPTFGAMALSGLKAAEEALK 309          

HSP 2 Score: 48.9062 bits (115), Expect = 2.530e-51
Identity = 22/28 (78.57%), Postives = 25/28 (89.29%), Query Frame = -3
Query:  759 NYVVIKHAALFTSIIMSKLLARPNVKLF 842
            NYVV+KHAALFTS IMSK+L  PN+KLF
Sbjct:  144 NYVVVKHAALFTSTIMSKVLQMPNIKLF 171          
BLAST of CX069860 vs. ExPASy Swiss-Prot
Match: THI4_UROFA (Thiazole biosynthetic enzyme, mitochondrial OS=Uromyces fabae GN=THI2 PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 1.906e-48
Identity = 85/156 (54.49%), Postives = 109/156 (69.87%), Query Frame = -1
Query:  314 FNAVAAEDLIVKG-------GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVG 760
            FNA A EDLI+K         R+ G VTNW LVS+NHD QSCMDP+ + A +V S  GHDGPFGA  VKR+ S G+ E +  M+ LDM  AED I   TRE++PG+IV GME++E DG+ RMGPTFGAM++SG++AA +AL+SL +    +G  VG
Sbjct:  180 FNATACEDLIIKPCPINPGVQRIAGCVTNWTLVSLNHDHQSCMDPSTITAPLVCSFAGHDGPFGAFCVKRVASAGLSEGLGDMRPLDMERAEDHIANKTREILPGLIVGGMELSEFDGSARMGPTFGAMLLSGKRAAEVALQSLDRVKIEEGEVVG 335          

HSP 2 Score: 47.3654 bits (111), Expect = 1.906e-48
Identity = 20/28 (71.43%), Postives = 26/28 (92.86%), Query Frame = -3
Query:  759 NYVVIKHAALFTSIIMSKLLARPNVKLF 842
            N+VV+KHAALFTS ++SK+LA PNVK+F
Sbjct:  153 NFVVVKHAALFTSTVLSKVLAMPNVKMF 180          
BLAST of CX069860 vs. ExPASy Swiss-Prot
Match: THI4_ASPOR (Thiazole biosynthetic enzyme, mitochondrial OS=Aspergillus oryzae GN=thiA PE=3 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 1.907e-48
Identity = 82/140 (58.57%), Postives = 105/140 (75.00%), Query Frame = -1
Query:  356 FNAVAAEDLIVK-----GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 760
            FNA A EDLI +       ++ GVV NW LV+++HD  SCMDPN + A V++S+ GHDGPFGA   KRL S+G ++++ GM+ LDMNSAEDAIV+ TREV  G+I+ GME++EIDG  RMGPTFGAM++SG KAA  ALK
Sbjct:  177 FNATAVEDLITRPTENGNPQIAGVVVNWTLVTLHHDDHSCMDPNTINAPVIISTTGHDGPFGAFCAKRLVSMGSVDKLGGMRGLDMNSAEDAIVKNTREVTKGLIIGGMELSEIDGFNRMGPTFGAMVLSGVKAAEEALK 316          

HSP 2 Score: 47.3654 bits (111), Expect = 1.907e-48
Identity = 21/28 (75.00%), Postives = 26/28 (92.86%), Query Frame = -3
Query:  759 NYVVIKHAALFTSIIMSKLLARPNVKLF 842
            NYVV+KHA+LFTS +MSK+L+ PNVKLF
Sbjct:  150 NYVVVKHASLFTSTLMSKVLSFPNVKLF 177          
BLAST of CX069860 vs. ExPASy Swiss-Prot
Match: THI2_SCHPO (Thiazole biosynthetic enzyme, mitochondrial OS=Schizosaccharomyces pombe GN=thi2 PE=2 SV=2)

HSP 1 Score: 172.94 bits (437), Expect = 1.950e-42
Identity = 91/153 (59.48%), Postives = 107/153 (69.93%), Query Frame = -1
Query:  317 FNAVAAEDLIVKGG-----RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYV 760
            FNA A EDLIVK G     R+ GVVTNW LVS+NH  QSCMDPN + A +VVS+ GHDGPFGA  VKRL S  ++  +  M+ LDMN AED IV+ TREV PGMIV GME++E DGA RMGPTFG MM SG KAA  AL    +  A++  Y+
Sbjct:  176 FNATAVEDLIVKEGKDGKQRIAGVVTNWTLVSLNHGLQSCMDPNTINAHLVVSATGHDGPFGAFCVKRLASAQLVSNLHDMRPLDMNRAEDLIVKGTREVFPGMIVGGMELSEFDGANRMGPTFGGMMFSGIKAAQEALAIFDERKAVNEKYL 328          
The following BLAST results are available for this feature:
BLAST of CX069860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
THI4_CITSI1.709e-95100.00Thiazole biosynthetic enzyme, chloroplastic OS=Cit... [more]
THI4_ALNGL7.102e-9193.63Thiazole biosynthetic enzyme, chloroplastic OS=Aln... [more]
THI4_ARATH5.477e-8588.54Thiazole biosynthetic enzyme, chloroplastic OS=Ara... [more]
THI41_MAIZE3.224e-8287.26Thiazole biosynthetic enzyme 1-1, chloroplastic OS... [more]
THI42_MAIZE4.596e-8191.78Thiazole biosynthetic enzyme 1-2, chloroplastic OS... [more]
THI4_FUSSH2.530e-5164.03Thiazole biosynthetic enzyme, mitochondrial OS=Fus... [more]
THI4_FUSOX2.530e-5163.31Thiazole biosynthetic enzyme, mitochondrial OS=Fus... [more]
THI4_UROFA1.906e-4854.49Thiazole biosynthetic enzyme, mitochondrial OS=Uro... [more]
THI4_ASPOR1.907e-4858.57Thiazole biosynthetic enzyme, mitochondrial OS=Asp... [more]
THI2_SCHPO1.950e-4259.48Thiazole biosynthetic enzyme, mitochondrial OS=Sch... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_13C09_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13C09-E17-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069860 ID=CX069860; Name=CX069860; organism=Citrus sinensis; type=EST; length=847bp
CTCTTTTTTTTAGATACGCAACTGCAAATTCACCTCCGAAAAACTCACAA
CGGTTTCTTACAAGAGGAGAAAGAAATTAAAATTAAAGGTTCCATGATGG
ACCGGAAACAAACACTTTATTCACAAAACCTCACAACATTATCTCATTAT
TCGCATCAACCATCCATCACAACCACCTAAATACAACTACTTTTTTGCCA
GAGTTTATTTGCATGCACACAGCTGATGAGTGATGATGCCTGTTATTACC
AAATTAAGCATCAGCAGTCTCAGCAGAATCAGCTGCAGCTAAGATCAGCT
CAGGGTGAACGCCTCCCACATATGTACCGTCTAATGCATTCGGCTGGCCC
AGTGACTTCAACGCCAAATGCGCAGCCTTCTGCCCCGATATCATCATTGC
TCCAAATGTTGGCCCCATTCGAGGAGCACCATCAATCTCGGCAACTTCCA
TGCCGGTAACTATCATACCAGGCACAACCTCCCTGGTCAGCCTCACAATA
GCATCTTCTGCAGAGTTCATGTCCAGTGCCTTCATTCCAGGCACTTCCTC
AATCATTCCGATACTCTTCAACCTCTTTACTCCAGTGGCCCCAAAAGGCC
CATCATGGCCACAAGAGCTCACAACCACCTTCGCTTCCATTACATTGGGA
TCCATGCAAGACTGTGTATCGTGATTCATTGACACCAACGCCCAGTTGGT
CACCACACCACCAACTCTGCCGCCTTTGACTATCAAGTCCTCGGCTGCCA
CTGCATTAAAAGAGCTTGACGTTGGGGCGGGCCAGGAGCTTGCTCATTAT
AATGGAGGTGAACAGCGCTGCATGCTTGATCACAACATAGTTGTCTT
back to top