CX069857

Overview
NameCX069857
Unique NameCX069857
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length635
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2916 contig Csv1_Contig2916:7..641. BLAST: Citrus Unigene V1 Contigs to SwissProt
Homology
BLAST of CX069857 vs. ExPASy Swiss-Prot
Match: YCF68_EUCGG (Uncharacterized protein ycf68 OS=Eucalyptus globulus subsp. globulus GN=ycf68-1 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.794e-36
Identity = 43/44 (97.73%), Postives = 44/44 (100.00%), Query Frame = -2
Query:  173 LRRCAWAVRALSHMDSSMCSSAPDPEMWIIQGTLAWRTSPVRTG 304
            +RRCAWAVRALSHMDSSMCSSAPDPEMWIIQGTLAWRTSPVRTG
Sbjct:    1 MRRCAWAVRALSHMDSSMCSSAPDPEMWIIQGTLAWRTSPVRTG 44          

HSP 2 Score: 77.7962 bits (190), Expect = 1.794e-36
Identity = 39/57 (68.42%), Postives = 40/57 (70.18%), Query Frame = -1
Query:    3 GFENKLLLRRIDGAIQVRSNVDPTFYSLVXXXXXXXXXXXXXXXDNPYIPYQCMDSY 173
            GFE K LLRRIDGAIQVRSNVDPTFYSLV               +NPYIPYQCMDSY
Sbjct:   44 GFETKPLLRRIDGAIQVRSNVDPTFYSLVGSGRSGGDPHGSSLLENPYIPYQCMDSY 100          
BLAST of CX069857 vs. ExPASy Swiss-Prot
Match: YCF68_PINTH (Uncharacterized protein ycf68 OS=Pinus thunbergii GN=ycf68 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.080e-11
Identity = 39/70 (55.71%), Postives = 42/70 (60.00%), Query Frame = -1
Query:    3 MAYFSC-SNRGFENKLLLRRIDGAIQVRSNVDPTFYSLV---XXXXXXXXXXXXXXXDNPYIPYQCMDSY 200
            MAY SC    GF  +L+LRRIDGAIQVRSN DPTFYS V                  +NPYIPYQCMD Y
Sbjct:    1 MAYSSCLCEPGFGTELILRRIDGAIQVRSNTDPTFYSFVDLGGPGVPVVIHLGSSLLENPYIPYQCMDGY 70          
BLAST of CX069857 vs. ExPASy Swiss-Prot
Match: YCF68_PINKO (Uncharacterized protein ycf68 OS=Pinus koraiensis GN=ycf68 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.410e-11
Identity = 39/70 (55.71%), Postives = 42/70 (60.00%), Query Frame = -1
Query:    3 MAYFSCS-NRGFENKLLLRRIDGAIQVRSNVDPTFYSLV---XXXXXXXXXXXXXXXDNPYIPYQCMDSY 200
            MAY SC    GF  +L+LRRIDGAIQVRSN DPTFYS V                  +NPYIPYQCMD Y
Sbjct:    1 MAYSSCLFEPGFGTELILRRIDGAIQVRSNADPTFYSFVDLGGPGGPVVIHHGSSLLENPYIPYQCMDGY 70          
BLAST of CX069857 vs. ExPASy Swiss-Prot
Match: YCF68_ORYSJ (Uncharacterized protein ycf68 OS=Oryza sativa subsp. japonica GN=ycf68-1 PE=3 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 9.389e-11
Identity = 31/39 (79.49%), Postives = 33/39 (84.62%), Query Frame = -1
Query:   87 MAYFSCSNRGFE-NKLLLRRIDGAIQVRSNVDPTFYSLV 200
            MAY SC NR  + NKLLLRRIDGAIQVRS+VD TFYSLV
Sbjct:    1 MAYSSCLNRSLKPNKLLLRRIDGAIQVRSHVDLTFYSLV 39          

HSP 2 Score: 30.0314 bits (66), Expect = 9.389e-11
Identity = 14/16 (87.50%), Postives = 14/16 (87.50%), Query Frame = -2
Query:    2 LFSIIHTSLISVWTAI 49
            LFS IHTSLISVW AI
Sbjct:   52 LFSRIHTSLISVWRAI 67          
BLAST of CX069857 vs. ExPASy Swiss-Prot
Match: YCF68_ORYSI (Uncharacterized protein ycf68 OS=Oryza sativa subsp. indica GN=ycf68-1 PE=3 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 9.389e-11
Identity = 31/39 (79.49%), Postives = 33/39 (84.62%), Query Frame = -1
Query:   87 MAYFSCSNRGFE-NKLLLRRIDGAIQVRSNVDPTFYSLV 200
            MAY SC NR  + NKLLLRRIDGAIQVRS+VD TFYSLV
Sbjct:    1 MAYSSCLNRSLKPNKLLLRRIDGAIQVRSHVDLTFYSLV 39          

HSP 2 Score: 30.0314 bits (66), Expect = 9.389e-11
Identity = 14/16 (87.50%), Postives = 14/16 (87.50%), Query Frame = -2
Query:    2 LFSIIHTSLISVWTAI 49
            LFS IHTSLISVW AI
Sbjct:   52 LFSRIHTSLISVWRAI 67          
BLAST of CX069857 vs. ExPASy Swiss-Prot
Match: YCF68_ORYSA (Uncharacterized protein ycf68 OS=Oryza sativa GN=ycf68-1 PE=3 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 9.389e-11
Identity = 31/39 (79.49%), Postives = 33/39 (84.62%), Query Frame = -1
Query:   87 MAYFSCSNRGFE-NKLLLRRIDGAIQVRSNVDPTFYSLV 200
            MAY SC NR  + NKLLLRRIDGAIQVRS+VD TFYSLV
Sbjct:    1 MAYSSCLNRSLKPNKLLLRRIDGAIQVRSHVDLTFYSLV 39          

HSP 2 Score: 30.0314 bits (66), Expect = 9.389e-11
Identity = 14/16 (87.50%), Postives = 14/16 (87.50%), Query Frame = -2
Query:    2 LFSIIHTSLISVWTAI 49
            LFS IHTSLISVW AI
Sbjct:   52 LFSRIHTSLISVWRAI 67          
BLAST of CX069857 vs. ExPASy Swiss-Prot
Match: YCF68_ORYNI (Uncharacterized protein ycf68 OS=Oryza nivara GN=ycf68-1 PE=3 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 9.389e-11
Identity = 31/39 (79.49%), Postives = 33/39 (84.62%), Query Frame = -1
Query:   87 MAYFSCSNRGFE-NKLLLRRIDGAIQVRSNVDPTFYSLV 200
            MAY SC NR  + NKLLLRRIDGAIQVRS+VD TFYSLV
Sbjct:    1 MAYSSCLNRSLKPNKLLLRRIDGAIQVRSHVDLTFYSLV 39          

HSP 2 Score: 30.0314 bits (66), Expect = 9.389e-11
Identity = 14/16 (87.50%), Postives = 14/16 (87.50%), Query Frame = -2
Query:    2 LFSIIHTSLISVWTAI 49
            LFS IHTSLISVW AI
Sbjct:   52 LFSRIHTSLISVWRAI 67          
The following BLAST results are available for this feature:
BLAST of CX069857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
YCF68_EUCGG1.794e-3697.73Uncharacterized protein ycf68 OS=Eucalyptus globul... [more]
YCF68_PINTH1.080e-1155.71Uncharacterized protein ycf68 OS=Pinus thunbergii ... [more]
YCF68_PINKO1.410e-1155.71Uncharacterized protein ycf68 OS=Pinus koraiensis ... [more]
YCF68_ORYSJ9.389e-1179.49Uncharacterized protein ycf68 OS=Oryza sativa subs... [more]
YCF68_ORYSI9.389e-1179.49Uncharacterized protein ycf68 OS=Oryza sativa subs... [more]
YCF68_ORYSA9.389e-1179.49Uncharacterized protein ycf68 OS=Oryza sativa GN=y... [more]
YCF68_ORYNI9.389e-1179.49Uncharacterized protein ycf68 OS=Oryza nivara GN=y... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_13C07_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13C07-E13-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069857 ID=CX069857; Name=CX069857; organism=Citrus sinensis; type=EST; length=635bp
AGATAGCTGTCCATACACTGATAAGGGATGTATGGATTATCGAGAAGAGA
GGAGCCGTGGTGGTCCCCCCCGGACCGCCCGGATCCCACGAGTGAATAGA
AAGTTGGATCTACATTGGATCTCACCTGAATCGCCCCATCTATCCTCCTG
AGGAGGAGTTTGTTTTCAAACCCCCGGTTCGAACAGGAGAAGTACGCCAT
GCTAATGTGCCTTGGATGATCCACATCTCAGGGTCAGGCGCTGATGAGCA
CATTGAACTATCCATGTGGCTGAGAGCCCTCACAGCCCAGGCACAACGAC
GCAATTATCAGGGGCGCGCTCTACCACTGAGCTAATAGCCCGTCGTGCGG
GCCTCCCGCTGGGGGCCCACTATGCCAAAAGCGAGAGAAACCCCATCCCT
CTCTTTCCTTTTTACGCCCCCAGGTCCCTCCCGTGTGGCGACATGGGGGC
GTAAAAGGGGGATCCTATCAACTTGTTCCGACCTAGGATAATAAGCTCAT
GGGCTTGGTCTTACTTCACCGTCGAGAAACGAAAGAAGACTTCCATCTCC
AAGTTTAACTCAGGCGTAGCTCGCTTCTTTTTGGGTGTGAAGCGGTGTCA
AACCAAAATACCCAACAAGCATTAGCTCTCCCTGA
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