CX069757

Overview
NameCX069757
Unique NameCX069757
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length874
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069757 vs. ExPASy Swiss-Prot
Match: YI31B_YEAST (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-I PE=3 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.888e-20
Identity = 53/128 (41.41%), Postives = 77/128 (60.16%), Query Frame = -2
Query:    1 SNAILVKKANGKWRMYIDFTDLNKACPKDSFPLPKIDQLVDSTAGHSLFSFMDAFLGYN*IPMFEKDEESTAFITN*GLFCYRVMTFGLKNAGATYQRLVNKIFKSLIRRTMEVYVDDMITKSKNPSE 384
            S  +LV K +G +R+ +D+  LNKA   D FPLP+ID L+       +F+ +D   GY+ IPM  KD   TAF+T  G + Y VM FGL NA +T+ R +   F+ L  R + VY+DD++  S++P E
Sbjct:  660 SPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPEE 785          
BLAST of CX069757 vs. ExPASy Swiss-Prot
Match: YG31B_YEAST (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 99.3673 bits (246), Expect = 2.888e-20
Identity = 53/128 (41.41%), Postives = 77/128 (60.16%), Query Frame = -2
Query:    1 SNAILVKKANGKWRMYIDFTDLNKACPKDSFPLPKIDQLVDSTAGHSLFSFMDAFLGYN*IPMFEKDEESTAFITN*GLFCYRVMTFGLKNAGATYQRLVNKIFKSLIRRTMEVYVDDMITKSKNPSE 384
            S  +LV K +G +R+ +D+  LNKA   D FPLP+ID L+       +F+ +D   GY+ IPM  KD   TAF+T  G + Y VM FGL NA +T+ R +   F+ L  R + VY+DD++  S++P E
Sbjct:  634 SPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPEE 759          
BLAST of CX069757 vs. ExPASy Swiss-Prot
Match: POL2_DROME (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster GN=pol PE=4 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.654e-15
Identity = 49/144 (34.03%), Postives = 79/144 (54.86%), Query Frame = -2
Query:    1 GFIQEVNYPEWISNAILVKKANG----KWRMYIDFTDLNKACPKDSFPLPKIDQLVDSTAGHSLFSFMDAFLGYN*IPMFEKDEESTAFITN*GLFCYRVMTFGLKNAGATYQRLVNKIFKSLIRRTMEVYVDDMITKSKNPSE 420
            G I+E N P      ++ KK +     K+R+ ID+  LN+    D +P+P +D+++        F+ +D   G++ I M E+    TAF T  G + Y  M FGL+NA AT+QR +N I + L+ +   VY+DD+I  S + +E
Sbjct:  233 GLIRESNSPYNSPTWVVPKKPDASGANKYRVVIDYRKLNEITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKSGHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTE 376          
BLAST of CX069757 vs. ExPASy Swiss-Prot
Match: POL3_DROME (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=4 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.891e-14
Identity = 45/134 (33.58%), Postives = 70/134 (52.24%), Query Frame = -2
Query:    1 NYPEWISNAILVKKANGKWRMYIDFTDLNKACPKDSFPLPKIDQLVDSTAGHSLFSFMDAFLGYN*IPMFEKDEESTAFITN*GLFCYRVMTFGLKNAGATYQRLVNKIFKSLIRRTMEVYVDDMITKSKNPSE 402
            N P W+           K+R+ ID+  LN+    D  P+P +D+++      + F+ +D   G++ I M  +    TAF T  G + Y  M FGLKNA AT+QR +N I + L+ +   VY+DD+I  S +  E
Sbjct:  244 NSPIWVVPKKQDASGKQKFRIVIDYRKLNEITVGDRHPIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDE 377          
BLAST of CX069757 vs. ExPASy Swiss-Prot
Match: POL5_DROME (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster GN=pol PE=4 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.535e-13
Identity = 44/131 (33.59%), Postives = 69/131 (52.67%), Query Frame = -2
Query:   10 NYPEWISNAILVKKANGKWRMYIDFTDLNKACPKDSFPLPKIDQLVDSTAGHSLFSFMDAFLGYN*IPMFEKDEESTAFITN*GLFCYRVMTFGLKNAGATYQRLVNKIFKSLIRRTMEVYVDDMITKSKN 402
            N P WI           ++RM +DF  LN     D++P+P I+  + S      F+ +D   G++ I M E D   TAF T  G + +  + FGLKNA A +QR+++ I +  I +   VY+DD+I  S++
Sbjct:  160 NSPIWIVPKKPKPNGEKQYRMVVDFKRLNTVTIPDTYPIPDINATLASLGNAKYFTTLDLTSGFHQIHMKESDIPKTAFSTLNGKYEFLRLPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSED 290          
BLAST of CX069757 vs. ExPASy Swiss-Prot
Match: POLY_DROME (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster GN=pol PE=4 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.618e-13
Identity = 45/139 (32.37%), Postives = 73/139 (52.52%), Query Frame = -2
Query:    1 NYPEWISNAILVKKA-----NGKWRMYIDFTDLNKACPKDSFPLPKIDQLVDSTAGHSLFSFMDAFLGYN*IPMFEKDEESTAFITN*GLFCYRVMTFGLKNAGATYQRLVNKIFKSLIRRTMEVYVDDMITKSKNPSE 402
            N P W+ +    KK      N   R+ IDF  LN+    D +P+P I  ++ +      F+ +D   GY+ I + E D E T+F  N G + +  + FGL+NA + +QR ++ + +  I +   VYVDD+I  S+N S+
Sbjct:  218 NSPTWVVD----KKGTDAFGNPNKRLVIDFRKLNEKTIPDRYPMPSIPMILANLGKAKFFTTLDLKSGYHQIYLAEHDREKTSFSVNGGKYEFCRLPFGLRNASSIFQRALDDVLREQIGKICYVYVDDVIIFSENESD 352          
BLAST of CX069757 vs. ExPASy Swiss-Prot
Match: POL4_DROME (Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster GN=POL PE=4 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.466e-13
Identity = 43/136 (31.62%), Postives = 72/136 (52.94%), Query Frame = -2
Query:   25 IQEVNYPEWISNAILVKKANG------KWRMYIDFTDLNKACPKDSFPLPKIDQLVDSTAGHSLFSFMDAFLGYN*IPMFEKDEESTAFITN*GLFCYRVMTFGLKNAGATYQRLVNKIFKSLIRRTMEVYVDDMI 414
            I E +  ++ S  +LV K +       KWR+ ID+  +NK    D FPLP+ID ++D       FS +D   G++ I + E   + T+F T+ G + +  + FGLK A  ++QR++   F  +      +Y+DD+I
Sbjct:  342 IVEPSVSQYNSPLLLVPKKSSPNSDKKKWRLVIDYRQINKKLLADKFPLPRIDDILDQLGRAKYFSCLDLMSGFHQIELDEGSRDITSFSTSNGSYRFTRLPFGLKIAPNSFQRMMTIAFSGIEPSQAFLYMDDLI 477          
BLAST of CX069757 vs. ExPASy Swiss-Prot
Match: RRPO_OENBE (RNA-directed DNA polymerase homolog OS=Oenothera bertiana PE=4 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.950e-13
Identity = 39/107 (36.45%), Postives = 61/107 (57.01%), Query Frame = -2
Query:   25 RMYIDFTDLNKACPKDSFPLPKIDQLVDSTAGHSLFSFMDAFLGYN*IPMFEKDEESTAFITN*GLFCYRVMTFGLKNAGATYQRLVNKIFKSLIRRTMEVYVDDMI 345
            RM ID+  L K   K+ +P+P++D L D  A  + F+ +D   GY  + + + DE  T  +T  G F +RVM FGL NA AT+  L+N +    +   + VY+DD++
Sbjct:    7 RMCIDYRALTKVTIKNKYPIPRVDDLFDRLAQATWFTKLDLRSGYWQVRIAKGDEPKTTCVTRYGSFEFRVMPFGLTNALATFCNLMNNVLYEYLDHFVVVYLDDLV 113          
BLAST of CX069757 vs. ExPASy Swiss-Prot
Match: RTF21_SCHPO (Retrotransposable element Tf2 155 kDa protein type 1 OS=Schizosaccharomyces pombe GN=Tf2-1 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.300e-12
Identity = 42/125 (33.60%), Postives = 66/125 (52.80%), Query Frame = -2
Query:    1 ILVKKANGKWRMYIDFTDLNKACPKDSFPLPKIDQLVDSTAGHSLFSFMDAFLGYN*IPMFEKDEESTAFITN*GLFCYRVMTFGLKNAGATYQRLVNKIFKSLIRRTMEVYVDDMITKSKNPSE 375
            + V K  G  RM +D+  LNK    + +PLP I+QL+    G ++F+ +D    Y+ I + + DE   AF    G+F Y VM +G+  A A +Q  +N I        +  Y+DD++  SK+ SE
Sbjct:  453 MFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESE 577          
BLAST of CX069757 vs. ExPASy Swiss-Prot
Match: RTF23_SCHPO (Retrotransposable element Tf2 155 kDa protein type 3 OS=Schizosaccharomyces pombe GN=Tf2-11 PE=4 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.449e-12
Identity = 41/125 (32.80%), Postives = 67/125 (53.60%), Query Frame = -2
Query:    1 ILVKKANGKWRMYIDFTDLNKACPKDSFPLPKIDQLVDSTAGHSLFSFMDAFLGYN*IPMFEKDEESTAFITN*GLFCYRVMTFGLKNAGATYQRLVNKIFKSLIRRTMEVYVDDMITKSKNPSE 375
            + V K  G  RM +D+  LNK    + +PLP I+QL+    G ++F+ +D    Y+ I + + DE   AF    G+F Y VM +G+  A A +Q  +N I   +    +  Y+D+++  SK+ SE
Sbjct:  453 MFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISIAPAHFQYFINTILGEVKESHVVCYMDNILIHSKSESE 577          
The following BLAST results are available for this feature:
BLAST of CX069757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
YI31B_YEAST2.888e-2041.41Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomy... [more]
YG31B_YEAST2.888e-2041.41Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomy... [more]
POL2_DROME3.654e-1534.03Retrovirus-related Pol polyprotein from transposon... [more]
POL3_DROME6.891e-1433.58Retrovirus-related Pol polyprotein from transposon... [more]
POL5_DROME1.535e-1333.59Retrovirus-related Pol polyprotein from transposon... [more]
POLY_DROME2.618e-1332.37Retrovirus-related Pol polyprotein from transposon... [more]
POL4_DROME4.466e-1331.62Retrovirus-related Pol polyprotein from transposon... [more]
RRPO_OENBE9.950e-1336.45RNA-directed DNA polymerase homolog OS=Oenothera b... [more]
RTF21_SCHPO1.300e-1233.60Retrotransposable element Tf2 155 kDa protein type... [more]
RTF23_SCHPO6.449e-1232.80Retrotransposable element Tf2 155 kDa protein type... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12F03_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12F03-L6-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069757 ID=CX069757; Name=CX069757; organism=Citrus sinensis; type=EST; length=874bp
TTCACTCGGGTTTTTCGATTTTGTTATCATGTCGTCCACATACACCTCCA
TCGTTCTTCTAATCAACGACTTAAAGATTTTGTTCACCAACCTCTGGTAT
GTGGCACCCGCATTTTTAAGACCAAATGTCATTACCCTGTAACAGAACAA
ACCCTAGTTAGTGATGAATGCCGTGCTCTCCTCATCCTTCTCGAACATTG
GGATTTAGTTGTATCCTAAGAATGCATCCATGAAGCTAAACAGACTATGC
CCGGCTGTCGAGTCAACTAGCTGGTCGATCTTTGGTAGGGGAAAGCTATC
TTTCGGGCACGCCTTGTTAAGGTCAGTGAAATCAATGTACATCCTCCATT
TGCCATTAGCTTTCTTTACCAGAATGGCATTCGATATCCATTCGGGGTAG
TTGACTTCCTGAATGAACCCTGCATGTTAACATGAATATGTTAATAATAT
TGATTTTGATGATAACAAACTTAAATGATTTTTGATTAAAATGTTGGAGC
TATTCCTTAATAAATGAAAGCCTTATAATCATTCCAATCATTCTCTTAAA
AGATAGACTTTCAAATTAGAAAATGACTCTTGCAAAATCTGGTTTAAAAT
GTGATTCTGAAAAAAAAATGGTGAACCGTTTTTTTTCAAACGGTTAACCG
ATTAAAACCAGAGAGCAACATTTTGCCTAAGCTCTAACCGATTAAGAAAA
ATGGAAAACACAAAAAGCTGGGAAGGCTACTGGAATTTAACGGTGAACCG
TTTATTTAAACGGTTAACCGTTAAAATCCAGAATTAAAGGTTGTACTCTT
CTGGCATCATTTAACAAAACCGGATAAGGCTAAATTACTTTGCAGGTTAC
TGGAAACAAACGGCGAACCGTTTA
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