CX069743

Overview
NameCX069743
Unique NameCX069743
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11576 contig Csv1_Contig11576:477..1159. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX069743 vs. ExPASy Swiss-Prot
Match: LRC40_MOUSE (Leucine-rich repeat-containing protein 40 OS=Mus musculus GN=Lrrc40 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 53/148 (35.81%), Postives = 75/148 (50.68%), Query Frame = 3 
Query:   45 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTXXXXXXXXXXXXXSQ-NSLQSIPEGFKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSIRRTILDRGTKAVLKYLKDKIPEN 485
            N L  VP D    +  L++L L  N   L   P F S   L+EL+L   Q+ +                 + N L+S+PE    L SL  LDLS+N+IS+            + L L+GNPLR+IRR I+ +GT+ VLKYL+ KI ++
Sbjct:  230 NLLETVPPD-VGSMESLELLYLRRN--KLRVLPEFPSCRQLKELHLAENQIEKLGAEHLQHLQAILVLDLRGNKLRSVPEEMALLQSLERLDLSNNDISSLPCSLGNLHL--KFLALEGNPLRTIRREIIAKGTQEVLKYLRSKIKDD 372
The following BLAST results are available for this feature:
BLAST of CX069743 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
LRC40_MOUSE6.144e-1135.81Leucine-rich repeat-containing protein 40 OS=Mus m... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_12E08_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12E08-J16-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069743 ID=CX069743; Name=CX069743; organism=Citrus sinensis; type=EST; length=683bp
CTTTTAACGTCACTCTCTAGCCTCTCTTGTTTGAAGCTGGACATAACCCA
CTCAGACAGGTTCCATCAGATGGATTCAAAGATATTCCTATGCTCCAGAT
TTTGGATCTAAGTTATAACATTGCTTCATTACCTGAGAATCCACCGTTTT
CCAGCTTACCTCATTTGCAGGAGCTTTACCTGAGAAGAATGCAGCTTCGC
GAAGCACCTACAGATATATTGAGGTTGCAACAACTGCGGATCCTTGACTT
GAGTCAAAACTCTCTTCAATCAATTCCTGAGGGGTTCAAAAACCTTACTT
CTCTCACTGAGCTTGATCTGTCAGACAATAACATTTCTGCACTACCCCCA
GAGCTGGGTTTGCTTGAACCCAGTCTACAGGCTTTAAGACTAGATGGAAA
TCCATTGAGAAGCATCCGGAGGACAATTTTAGATAGAGGTACGAAAGCAG
TTCTGAAATATTTGAAGGATAAAATTCCTGAGAACTAGTTTGCTGCCGTT
TGCCATCCCTTCTCTCTTTCTCTTTCAAGATTGGTTGAGTCAAACGTACG
TCGCTACTTTGTTCTTATATTTTTCATTCGAAAGATTGATTTGAAGCACC
TCATGCTTTGCCTATACTTTAGTGTAAAAGTTTGTAACATGTATACTCAT
GAGAAAATGAAGTTAGTGATTTGTTCAAAAAAA
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