CX069699

Overview
NameCX069699
Unique NameCX069699
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length840
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069699 vs. ExPASy Swiss-Prot
Match: TCPG_OXYGR (T-complex protein 1 subunit gamma OS=Oxytricha granulifera PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 6.849e-56
Identity = 110/197 (55.84%), Postives = 138/197 (70.05%), Query Frame = 3
Query:    3 FIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANG-ENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGSGQ 590
            F+  C++PKAC++LLRGASKD+LNE+ERNL DA+ VARN++ NPKLVPGGGA E+ ++  L + S  IEG++                     QWP++A A A E IPRTLAQNCG +V+R MT L+ KHAN  E  + GIDGNTG I DM+E  +WD  +VK QT KT+IEA CMLLRIDDIVSGIKK +  G+GQ
Sbjct:  364 FMTKCENPKACSILLRGASKDVLNEIERNLHDALGVARNVMVNPKLVPGGGAIEMELACRLMEFSQKIEGMQ---------------------QWPFKALAGALEVIPRTLAQNCGADVVRVMTELRAKHANDKEGLYWGIDGNTGKIRDMRESNVWDPISVKQQTLKTSIEATCMLLRIDDIVSGIKKDKRGGAGQ 539          
BLAST of CX069699 vs. ExPASy Swiss-Prot
Match: TCPG_SCHPO (T-complex protein 1 subunit gamma OS=Schizosaccharomyces pombe GN=cct3 PE=1 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.579e-52
Identity = 104/188 (55.32%), Postives = 131/188 (69.68%), Query Frame = 3
Query:    3 FIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKK 566
            F+  CK+PKACT+LLRG SKD++NEVERNLQDAM+VARN+  +PKL PGGGATE+ VS  L +K+ SIEG                     V QWPY A A A E IPRTL QNCG N I+ +T L+ KHA G++++ GIDG TG + DM E  +W+   VK Q+ KTAIE+AC+LLR+DDIVSG++K
Sbjct:  360 FLTGCKNPKACTILLRGPSKDIINEVERNLQDAMAVARNVFFHPKLSPGGGATEMAVSVRLAEKARSIEG---------------------VAQWPYRAVADAIEIIPRTLVQNCGANPIKALTELRAKHAEGQHSF-GIDGETGRVVDMHEYGVWEPEAVKLQSIKTAIESACLLLRVDDIVSGVRK 525          
BLAST of CX069699 vs. ExPASy Swiss-Prot
Match: TCPG_TETPY (T-complex protein 1 subunit gamma OS=Tetrahymena pyriformis PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 2.062e-52
Identity = 102/195 (52.31%), Postives = 138/195 (70.77%), Query Frame = 3
Query:    3 FIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGSG 587
            F+ +C++P+AC+++LRGASKD+LNE+ERNL D ++VA+NI  NPKLVPGGGA E+ VS+ L++ SSSIEG+                      Q P+ A A A EAIP+TLAQNCGV+V+R +T L+ KH    N +IGI+GN+G I+DM E  +W+   VK Q +KTAIE+ACMLLRIDD+VSG+KK++    G
Sbjct:  365 FMTECENPEACSIILRGASKDVLNEMERNLHDCLAVAKNIFVNPKLVPGGGAIEMEVSSHLEKISSSIEGLH---------------------QLPFRAVAYALEAIPKTLAQNCGVDVVRNITELRAKHNQEGNKFIGIEGNSGKITDMGEANVWEPIAVKLQVYKTAIESACMLLRIDDVVSGLKKQKVAKGG 538          
BLAST of CX069699 vs. ExPASy Swiss-Prot
Match: TCPG_XENLA (T-complex protein 1 subunit gamma OS=Xenopus laevis GN=cct3 PE=2 SV=2)

HSP 1 Score: 202.601 bits (514), Expect = 2.280e-51
Identity = 106/209 (50.72%), Postives = 136/209 (65.07%), Query Frame = 3
Query:    3 FIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHA-NGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGSGQAPSKPQIETEAD 626
            FI DCKDPKACT++LRGASK++L EVERNLQDAM V RN++ +P LVPGGGA+E++V+  L +KS ++ G+E                     QWPY A A A E IPRTL QNCG + IR +T+L+ KH   G   W G+DG  G ++DMKE  IW+   VK QT+KTA+E A +LLRIDDIVSG KKK      Q  + P+   +A+
Sbjct:  361 FITDCKDPKACTIVLRGASKEILAEVERNLQDAMQVCRNVVIDPYLVPGGGASEMSVAHILTEKSKTMTGVE---------------------QWPYRAVAQALEVIPRTLIQNCGASTIRILTSLRAKHTQEGCQTW-GVDGEAGVLADMKELGIWEPLAVKLQTYKTAVETAILLLRIDDIVSGHKKKGEDHGRQPAAAPEAPQQAE 547          
BLAST of CX069699 vs. ExPASy Swiss-Prot
Match: TCPG_RAT (T-complex protein 1 subunit gamma OS=Rattus norvegicus GN=Cct3 PE=1 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 3.889e-51
Identity = 106/204 (51.96%), Postives = 133/204 (65.20%), Query Frame = 3
Query:    3 FIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKK--------QAPGSGQ 590
            FI DCKDPKACT+LLRGASK++L+EVERNLQDAM V RN++ +P+LVPGGGA+E+ V+  L +KS ++ G+E                     QWPY A A A E IPRTL QNCG + IR +T+L+ KH        G++G TG + DMKE  IW+   VK QT+KTA+E A +LLRIDDIVSG KKK         AP +GQ
Sbjct:  362 FITDCKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTGVE---------------------QWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGHKKKGDDQNRQTGAPDAGQ 544          
BLAST of CX069699 vs. ExPASy Swiss-Prot
Match: TCPG_PONAB (T-complex protein 1 subunit gamma OS=Pongo abelii GN=CCT3 PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 3.889e-51
Identity = 106/204 (51.96%), Postives = 133/204 (65.20%), Query Frame = 3
Query:    3 FIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKK--------QAPGSGQ 590
            FI DCKDPKACT+LLRGASK++L+EVERNLQDAM V RN++ +P+LVPGGGA+E+ V+  L +KS ++ G+E                     QWPY A A A E IPRTL QNCG + IR +T+L+ KH        G++G TG + DMKE  IW+   VK QT+KTA+E A +LLRIDDIVSG KKK         AP +GQ
Sbjct:  362 FITDCKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTGVE---------------------QWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGHKKKGDDQSRQGGAPDAGQ 544          
BLAST of CX069699 vs. ExPASy Swiss-Prot
Match: TCPG_MOUSE (T-complex protein 1 subunit gamma OS=Mus musculus GN=Cct3 PE=1 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 3.889e-51
Identity = 106/204 (51.96%), Postives = 133/204 (65.20%), Query Frame = 3
Query:    3 FIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKK--------QAPGSGQ 590
            FI DCKDPKACT+LLRGASK++L+EVERNLQDAM V RN++ +P+LVPGGGA+E+ V+  L +KS ++ G+E                     QWPY A A A E IPRTL QNCG + IR +T+L+ KH        G++G TG + DMKE  IW+   VK QT+KTA+E A +LLRIDDIVSG KKK         AP +GQ
Sbjct:  362 FITDCKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTGVE---------------------QWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQESCETWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGHKKKGDDQNRQTGAPDAGQ 544          
BLAST of CX069699 vs. ExPASy Swiss-Prot
Match: TCPG_HUMAN (T-complex protein 1 subunit gamma OS=Homo sapiens GN=CCT3 PE=1 SV=4)

HSP 1 Score: 201.83 bits (512), Expect = 3.889e-51
Identity = 106/204 (51.96%), Postives = 133/204 (65.20%), Query Frame = 3
Query:    3 FIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKK--------QAPGSGQ 590
            FI DCKDPKACT+LLRGASK++L+EVERNLQDAM V RN++ +P+LVPGGGA+E+ V+  L +KS ++ G+E                     QWPY A A A E IPRTL QNCG + IR +T+L+ KH        G++G TG + DMKE  IW+   VK QT+KTA+E A +LLRIDDIVSG KKK         AP +GQ
Sbjct:  362 FITDCKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTGVE---------------------QWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGHKKKGDDQSRQGGAPDAGQ 544          
BLAST of CX069699 vs. ExPASy Swiss-Prot
Match: TCPG_BOVIN (T-complex protein 1 subunit gamma OS=Bos taurus GN=CCT3 PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 1.131e-50
Identity = 105/204 (51.47%), Postives = 133/204 (65.20%), Query Frame = 3
Query:    3 FIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKK--------QAPGSGQ 590
            FI +CKDPKACT+LLRGASK++L+EVERNLQDAM V RN++ +P+LVPGGGA+E+ V+  L +KS ++ G+E                     QWPY A A A E IPRTL QNCG + IR +T+L+ KH        G++G TG + DMKE  IW+   VK QT+KTA+E A +LLRIDDIVSG KKK         AP +GQ
Sbjct:  362 FITECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTGVE---------------------QWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGHKKKGDDQSRQGGAPDAGQ 544          
BLAST of CX069699 vs. ExPASy Swiss-Prot
Match: TCPG_MACFA (T-complex protein 1 subunit gamma OS=Macaca fascicularis GN=CCT3 PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 3.292e-50
Identity = 104/204 (50.98%), Postives = 133/204 (65.20%), Query Frame = 3
Query:    3 FIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKK--------QAPGSGQ 590
            FI +CKDPKACT+LLRGASK++L+EVERNLQDAM V RN++ +P+LVPGGGA+E+ V+  L +KS ++ G+E                     QWPY A A A E IPRTL QNCG + IR +T+L+ KH        G++G TG + D+KE  IW+   VK QT+KTA+E A +LLRIDDIVSG KKK         AP +GQ
Sbjct:  362 FITECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTGVE---------------------QWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGVNGETGTLVDVKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGHKKKGDDQSRQGGAPDAGQ 544          
The following BLAST results are available for this feature:
BLAST of CX069699 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
TCPG_OXYGR6.849e-5655.84T-complex protein 1 subunit gamma OS=Oxytricha gra... [more]
TCPG_SCHPO1.579e-5255.32T-complex protein 1 subunit gamma OS=Schizosacchar... [more]
TCPG_TETPY2.062e-5252.31T-complex protein 1 subunit gamma OS=Tetrahymena p... [more]
TCPG_XENLA2.280e-5150.72T-complex protein 1 subunit gamma OS=Xenopus laevi... [more]
TCPG_RAT3.889e-5151.96T-complex protein 1 subunit gamma OS=Rattus norveg... [more]
TCPG_PONAB3.889e-5151.96T-complex protein 1 subunit gamma OS=Pongo abelii ... [more]
TCPG_MOUSE3.889e-5151.96T-complex protein 1 subunit gamma OS=Mus musculus ... [more]
TCPG_HUMAN3.889e-5151.96T-complex protein 1 subunit gamma OS=Homo sapiens ... [more]
TCPG_BOVIN1.131e-5051.47T-complex protein 1 subunit gamma OS=Bos taurus GN... [more]
TCPG_MACFA3.292e-5050.98T-complex protein 1 subunit gamma OS=Macaca fascic... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12C05_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12C05-F10-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069699 ID=CX069699; Name=CX069699; organism=Citrus sinensis; type=EST; length=840bp
CATTCATTGTTGATTGCAAAGATCCAAAAGCTTGTACTGTACTCTTAAGA
GGTGCTAGTAAGGATCTCCTGAATGAAGTGGAAAGGAATTTGCAGGATGC
AATGTCTGTGGCAAGAAACATAATCAAGAATCCAAAACTAGTACCTGGTG
GTGGGGCTACAGAATTAACAGTGTCTGCCACTCTAAAACAAAAGAGTTCC
TCAATCGAAGGCATCGAAAAGTGGCTTTTCCGCCGTTTTTGTTATTCATC
AGCCTGACATCCATGCTTCATCATTGTAAAACAGTGGCCTTACGAAGCTG
CTGCTATTGCTTTTGAGGCTATTCCAAGAACTTTGGCTCAGAATTGTGGC
GTTAATGTAATTCGGACTATGACTGCTCTGCAAGGAAAACATGCAAATGG
TGAAAATGCATGGATCGGCATAGATGGAAACACTGGTGCAATTTCTGACA
TGAAAGAGGGGAAGATCTGGGATGCATATAATGTGAAAGCACAGACATTT
AAGACAGCAATTGAAGCTGCTTGCATGCTTCTGAGGATTGATGACATTGT
CAGTGGAATTAAGAAGAAACAGGCCCCTGGCTCAGGCCAAGCTCCATCGA
AGCCCCAGATTGAGACGGAGGCAGATGCAGATAGTGAGCAAATACTCCCT
GATTAGACAATGTTATTGTCAACGACTATGCAGTTTAATTATTTGAAAAA
ATGTTGGTTTATTGTTCTGTTGGCGGTCTAATGATTTTGCTGAGCTTTTC
CTCCAAATTTTGTGATATTGCGCCAATGTTTTAGCCATTGTAGACAAACT
GGGAAGCTGTGATATGCTCTGCAATATATATATATATTTT
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