DR403981

Overview
NameDR403981
Unique NameDR403981
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length728
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6152 contig Csv1_Contig6152:1..728. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DR403981 vs. ExPASy Swiss-Prot
Match: VPS29_DANRE (Vacuolar protein sorting-associated protein 29 OS=Danio rerio GN=vps29 PE=2 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 3.362e-58
Identity = 100/155 (64.52%), Postives = 127/155 (81.94%), Query Frame = 2 
Query:  263 IGDLHIPHRASDLPQKFKSMLVPGKIQHIICTGNLSIKEVHDYLKSLCPDLHVTRGEYDEDSRYPETKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSATGAYSSFTFDVNPSFVLMDIDGLRV 727
            +GDLHIPHR + LP KFK +LVPGKIQHI+CTGNL  KE +DYLK+L  D+H+ RG++DE+  YPE K +T+GQFK+G+ HGHQVIPWGD+ SLA+LQRQLDVDIL++GHTH+F+A+++E    INPGSATGAYS+   ++ PSFVLMDI    V
Sbjct:    6 LGDLHIPHRCNTLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQLDVDILISGHTHKFEAFENENKFYINPGSATGAYSALESNITPSFVLMDIQASTV 160
[Close]
BLAST of DR403981 vs. ExPASy Swiss-Prot
Match: VPS29_PONAB (Vacuolar protein sorting-associated protein 29 OS=Pongo abelii GN=VPS29 PE=2 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 5.735e-58
Identity = 99/155 (63.87%), Postives = 126/155 (81.29%), Query Frame = 2 
Query:  263 IGDLHIPHRASDLPQKFKSMLVPGKIQHIICTGNLSIKEVHDYLKSLCPDLHVTRGEYDEDSRYPETKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSATGAYSSFTFDVNPSFVLMDIDGLRV 727
            +GDLHIPHR + LP KFK +LVPGKIQHI+CTGNL  KE +DYLK+L  D+H+ RG++DE+  YPE K +T+GQFK+G+ HGHQVIPWGD+ SLA+LQRQ DVDIL++GHTH+F+A++HE    INPGSATGAY++   ++ PSFVLMDI    V
Sbjct:    6 LGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYNALEANIIPSFVLMDIQASTV 160
[Close]
BLAST of DR403981 vs. ExPASy Swiss-Prot
Match: VPS29_MOUSE (Vacuolar protein sorting-associated protein 29 OS=Mus musculus GN=Vps29 PE=1 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 5.735e-58
Identity = 99/155 (63.87%), Postives = 126/155 (81.29%), Query Frame = 2 
Query:  263 IGDLHIPHRASDLPQKFKSMLVPGKIQHIICTGNLSIKEVHDYLKSLCPDLHVTRGEYDEDSRYPETKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSATGAYSSFTFDVNPSFVLMDIDGLRV 727
            +GDLHIPHR + LP KFK +LVPGKIQHI+CTGNL  KE +DYLK+L  D+H+ RG++DE+  YPE K +T+GQFK+G+ HGHQVIPWGD+ SLA+LQRQ DVDIL++GHTH+F+A++HE    INPGSATGAY++   ++ PSFVLMDI    V
Sbjct:    6 LGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTV 160
[Close]
BLAST of DR403981 vs. ExPASy Swiss-Prot
Match: VPS29_HUMAN (Vacuolar protein sorting-associated protein 29 OS=Homo sapiens GN=VPS29 PE=1 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 5.735e-58
Identity = 99/155 (63.87%), Postives = 126/155 (81.29%), Query Frame = 2 
Query:  263 IGDLHIPHRASDLPQKFKSMLVPGKIQHIICTGNLSIKEVHDYLKSLCPDLHVTRGEYDEDSRYPETKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSATGAYSSFTFDVNPSFVLMDIDGLRV 727
            +GDLHIPHR + LP KFK +LVPGKIQHI+CTGNL  KE +DYLK+L  D+H+ RG++DE+  YPE K +T+GQFK+G+ HGHQVIPWGD+ SLA+LQRQ DVDIL++GHTH+F+A++HE    INPGSATGAY++   ++ PSFVLMDI    V
Sbjct:    6 LGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTV 160
[Close]
BLAST of DR403981 vs. ExPASy Swiss-Prot
Match: VPS29_BOVIN (Vacuolar protein sorting-associated protein 29 OS=Bos taurus GN=VPS29 PE=2 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 5.735e-58
Identity = 99/155 (63.87%), Postives = 126/155 (81.29%), Query Frame = 2 
Query:  263 IGDLHIPHRASDLPQKFKSMLVPGKIQHIICTGNLSIKEVHDYLKSLCPDLHVTRGEYDEDSRYPETKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSATGAYSSFTFDVNPSFVLMDIDGLRV 727
            +GDLHIPHR + LP KFK +LVPGKIQHI+CTGNL  KE +DYLK+L  D+H+ RG++DE+  YPE K +T+GQFK+G+ HGHQVIPWGD+ SLA+LQRQ DVDIL++GHTH+F+A++HE    INPGSATGAY++   ++ PSFVLMDI    V
Sbjct:   10 LGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTV 164
[Close]
BLAST of DR403981 vs. ExPASy Swiss-Prot
Match: VPS29_RAT (Vacuolar protein sorting-associated protein 29 OS=Rattus norvegicus GN=Vps29 PE=1 SV=2)

HSP 1 Score: 223.787 bits (569), Expect = 7.490e-58
Identity = 99/155 (63.87%), Postives = 125/155 (80.65%), Query Frame = 2 
Query:  263 IGDLHIPHRASDLPQKFKSMLVPGKIQHIICTGNLSIKEVHDYLKSLCPDLHVTRGEYDEDSRYPETKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSATGAYSSFTFDVNPSFVLMDIDGLRV 727
            +GDLHIPHR + LP KFK +LVPGKIQHI+CTGNL  KE +DYLK+L  D+H+ RG++DE   YPE K +T+GQFK+G+ HGHQVIPWGD+ SLA+LQRQ DVDIL++GHTH+F+A++HE    INPGSATGAY++   ++ PSFVLMDI    V
Sbjct:    6 LGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVRGDFDESLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTV 160
[Close]
BLAST of DR403981 vs. ExPASy Swiss-Prot
Match: VPS29_CHICK (Vacuolar protein sorting-associated protein 29 OS=Gallus gallus GN=VPS29 PE=2 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.278e-57
Identity = 99/155 (63.87%), Postives = 125/155 (80.65%), Query Frame = 2 
Query:  263 IGDLHIPHRASDLPQKFKSMLVPGKIQHIICTGNLSIKEVHDYLKSLCPDLHVTRGEYDEDSRYPETKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSATGAYSSFTFDVNPSFVLMDIDGLRV 727
            +GDLHIPHR + LP KFK +LVPGKIQHI+CTGNL  K+ +DYLK+L  D+HV RG++DE+  YPE K +T+GQFK+G+ HGHQVIPWGD+ SLA+LQRQ DVDIL++GHTH+F+A++HE    INPGSATGAY +   ++ PSFVLMDI    V
Sbjct:   10 LGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKDTYDYLKTLAGDVHVVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYHALENNIIPSFVLMDIQASTV 164
[Close]
BLAST of DR403981 vs. ExPASy Swiss-Prot
Match: VPS29_XENTR (Vacuolar protein sorting-associated protein 29 OS=Xenopus tropicalis GN=vps29 PE=2 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 4.855e-57
Identity = 99/155 (63.87%), Postives = 125/155 (80.65%), Query Frame = 2 
Query:  263 IGDLHIPHRASDLPQKFKSMLVPGKIQHIICTGNLSIKEVHDYLKSLCPDLHVTRGEYDEDSRYPETKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSATGAYSSFTFDVNPSFVLMDIDGLRV 727
            +GDLHIPHR + LP KFK +LVPGKIQHI+CTGNL  KE  DYLK+L  D+H+ RG++DE+  YPE K +T+GQFK+G+ HGHQVIPWGD+ SLA+LQRQLDVDIL++GHT +F+A++HE    INPGSATGAY++   ++ PSFVLMDI    V
Sbjct:    6 LGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESFDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQLDVDILISGHTQKFEAFEHENKFYINPGSATGAYNALENNIIPSFVLMDIQASTV 160
[Close]
BLAST of DR403981 vs. ExPASy Swiss-Prot
Match: VPS29_XENLA (Vacuolar protein sorting-associated protein 29 OS=Xenopus laevis GN=vps29 PE=2 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 4.855e-57
Identity = 99/155 (63.87%), Postives = 125/155 (80.65%), Query Frame = 2 
Query:  263 IGDLHIPHRASDLPQKFKSMLVPGKIQHIICTGNLSIKEVHDYLKSLCPDLHVTRGEYDEDSRYPETKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSATGAYSSFTFDVNPSFVLMDIDGLRV 727
            +GDLHIPHR + LP KFK +LVPGKIQHI+CTGNL  KE  DYLK+L  D+H+ RG++DE+  YPE K +T+GQFK+G+ HGHQVIPWGD+ SLA+LQRQLDVDIL++GHT +F+A++HE    INPGSATGAY++   ++ PSFVLMDI    V
Sbjct:    6 LGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESFDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQLDVDILISGHTQKFEAFEHENKFYINPGSATGAYNALENNIIPSFVLMDIQASTV 160
[Close]
BLAST of DR403981 vs. ExPASy Swiss-Prot
Match: VPS29_DICDI (Vacuolar protein sorting-associated protein 29 OS=Dictyostelium discoideum GN=vps29 PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.727e-54
Identity = 91/151 (60.26%), Postives = 122/151 (80.79%), Query Frame = 2 
Query:  260 AIGDLHIPHRASDLPQKFKSMLVPGKIQHIICTGNLSIKEVHDYLKSLCPDLHVTRGEYDEDSRYPETKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSATGAYSSFTFDVNPSFVLMDI 712
            AIGD+H+PHR+  +P +FK +LVP KIQHI+CTGNL  KE+HDY K L  D+H+ RG+ DE++ YP+TK ++IGQFK G+CHGHQ++PWGD  SLA LQRQLDVD+L++GHTH  + ++  G + +NPGSATGA+S+ + DV PSFVLMD+
Sbjct:    5 AIGDVHVPHRSYGIPPEFKKLLVPEKIQHILCTGNLVSKEIHDYFKVLTSDVHIVRGDLDENTSYPDTKIVSIGQFKFGLCHGHQIVPWGDRASLAALQRQLDVDVLISGHTHVLEVFESNGKLFVNPGSATGAFSNISNDVIPSFVLMDV 155
The following BLAST results are available for this feature:
BLAST of DR403981 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
VPS29_DANRE3.362e-5864.52Vacuolar protein sorting-associated protein 29 OS=... [more]
VPS29_PONAB5.735e-5863.87Vacuolar protein sorting-associated protein 29 OS=... [more]
VPS29_MOUSE5.735e-5863.87Vacuolar protein sorting-associated protein 29 OS=... [more]
VPS29_HUMAN5.735e-5863.87Vacuolar protein sorting-associated protein 29 OS=... [more]
VPS29_BOVIN5.735e-5863.87Vacuolar protein sorting-associated protein 29 OS=... [more]
VPS29_RAT7.490e-5863.87Vacuolar protein sorting-associated protein 29 OS=... [more]
VPS29_CHICK1.278e-5763.87Vacuolar protein sorting-associated protein 29 OS=... [more]
VPS29_XENTR4.855e-5763.87Vacuolar protein sorting-associated protein 29 OS=... [more]
VPS29_XENLA4.855e-5763.87Vacuolar protein sorting-associated protein 29 OS=... [more]
VPS29_DICDI1.727e-5460.26Vacuolar protein sorting-associated protein 29 OS=... [more]

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Properties
Property NameValue
Genbank descriptionCSAH-PNP1246O08 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone CSAH-PNP1246O08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403981 ID=DR403981; Name=DR403981; organism=Citrus sinensis; type=EST; length=728bp
GGGGATTGNNAATTATATCATTCCAGTACCCAAACACCCGGCTTATTAAA
NNNNNGGCGAAGCAACCGAACGTCCAGTTTCTGTACGTTTGGCGCTATGA
TCTACGAACTTAACTAAGAAGCCTTGCATCCTTACTTCAGCCGGTTGCTA
ATTACCAATTGCTCTTGTTCCTTAAACTAATCAGACAAGAACAGATTATG
GTGATGGGTCAATATTAAGAGAGAGGTTGCTTATTTTGTTGAAGATGGTG
TTAGTATTAGCAATCGGAGACCTTCACATTCCTCACCGTGCATCTGACCT
GCCCCAAAAGTTCAAATCTATGCTCGTTCCTGGAAAAATTCAGCACATCA
TTTGTACTGGCAATCTCTCTATCAAAGAAGTCCATGATTATTTGAAGAGT
CTTTGTCCTGATTTGCATGTCACTCGAGGTGAATATGATGAAGATTCACG
TTATCCCGAAACTAAGACACTCACCATTGGGCAATTCAAGCTTGGAATCT
GCCATGGTCATCAGGTTATTCCATGGGGGGACTTGGATTCGCTGGCAATG
CTGCAAAGGCAGTTGGATGTGGACATCCTTGTGACTGGTCATACCCATCA
GTTCAAAGCCTACAAACATGAAGGTGGTGTTGTTATAAATCCTGGCTCTG
CAACTGGTGCCTACAGTAGCTTTACATTTGATGTAAACCCAAGCTTTGTA
CTCATGGACATTGATGGTCTGCGAGTTG
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