DR403971

Overview
NameDR403971
Unique NameDR403971
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length713
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10001 contig Csv1_Contig10001:96..808. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403971 vs. ExPASy Swiss-Prot
Match: UBA3_ARATH (NEDD8-activating enzyme E1 catalytic subunit OS=Arabidopsis thaliana GN=ECR1 PE=1 SV=2)

HSP 1 Score: 323.553 bits (828), Expect = 6.674e-88
Identity = 156/184 (84.78%), Postives = 166/184 (90.22%), Query Frame = 1
Query:  160 GNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIXLFPPQ 711
            GNLV P F PG  LRDD+++Y RILV+GAGGLGCELLKDLALSGF+NLEVIDMDRIEV+NLNRQFLFR+EDVGKPKAEVAAKRVMERVSGV IVPHF RIEDK+I FYNDFNII LGLDSIEAR YIN VAC FLEY  DD P+ ETIKPMVDGGTEGFKGHARVI+PGVTPCFECTI LFPPQ
Sbjct:   26 GNLVDPGFVPGPGLRDDIRDYVRILVIGAGGLGCELLKDLALSGFRNLEVIDMDRIEVTNLNRQFLFRIEDVGKPKAEVAAKRVMERVSGVEIVPHFSRIEDKEIEFYNDFNIIALGLDSIEARKYINGVACGFLEYNEDDTPKRETIKPMVDGGTEGFKGHARVILPGVTPCFECTIYLFPPQ 209          
BLAST of DR403971 vs. ExPASy Swiss-Prot
Match: UBA3_RAT (NEDD8-activating enzyme E1 catalytic subunit OS=Rattus norvegicus GN=Uba3 PE=1 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.773e-56
Identity = 109/185 (58.92%), Postives = 139/185 (75.14%), Query Frame = 1
Query:  157 AGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIXLFPPQ 711
            +G    P FEP TE    L +  ++LV+GAGGLGCELLK+LALSGF+ + VIDMD I+VSNLNRQFLFR +DVG+PKAEVAA+ + +RV   N+VPHF +I+D + +FY  F+IIV GLDSI AR +IN +  S L YE D      +I P++DGGTEGFKG+ARVI+PG+T C ECT+ L+PPQ
Sbjct:   48 SGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDVGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYE-DGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQ 231          
BLAST of DR403971 vs. ExPASy Swiss-Prot
Match: UBA3_MOUSE (NEDD8-activating enzyme E1 catalytic subunit OS=Mus musculus GN=Uba3 PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.773e-56
Identity = 109/185 (58.92%), Postives = 139/185 (75.14%), Query Frame = 1
Query:  157 AGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIXLFPPQ 711
            +G    P FEP TE    L +  ++LV+GAGGLGCELLK+LALSGF+ + VIDMD I+VSNLNRQFLFR +DVG+PKAEVAA+ + +RV   N+VPHF +I+D + +FY  F+IIV GLDSI AR +IN +  S L YE D      +I P++DGGTEGFKG+ARVI+PG+T C ECT+ L+PPQ
Sbjct:   48 SGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDVGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYE-DGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQ 231          
BLAST of DR403971 vs. ExPASy Swiss-Prot
Match: UBA3_PONAB (NEDD8-activating enzyme E1 catalytic subunit OS=Pongo abelii GN=UBA3 PE=2 SV=2)

HSP 1 Score: 218.779 bits (556), Expect = 2.315e-56
Identity = 108/185 (58.38%), Postives = 139/185 (75.14%), Query Frame = 1
Query:  157 AGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIXLFPPQ 711
            +G    P FEP TE    L +  ++LV+GAGGLGCELLK+LALSGF+ + VIDMD I+VSNLNRQFLFR +D+G+PKAEVAA+ + +RV   N+VPHF +I+D + +FY  F+IIV GLDSI AR +IN +  S L YE D      +I P++DGGTEGFKG+ARVI+PG+T C ECT+ L+PPQ
Sbjct:   48 SGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYE-DGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQ 231          
BLAST of DR403971 vs. ExPASy Swiss-Prot
Match: UBA3_HUMAN (NEDD8-activating enzyme E1 catalytic subunit OS=Homo sapiens GN=UBA3 PE=1 SV=2)

HSP 1 Score: 218.779 bits (556), Expect = 2.315e-56
Identity = 108/185 (58.38%), Postives = 139/185 (75.14%), Query Frame = 1
Query:  157 AGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIXLFPPQ 711
            +G    P FEP TE    L +  ++LV+GAGGLGCELLK+LALSGF+ + VIDMD I+VSNLNRQFLFR +D+G+PKAEVAA+ + +RV   N+VPHF +I+D + +FY  F+IIV GLDSI AR +IN +  S L YE D      +I P++DGGTEGFKG+ARVI+PG+T C ECT+ L+PPQ
Sbjct:   48 SGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYE-DGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQ 231          
BLAST of DR403971 vs. ExPASy Swiss-Prot
Match: UBA3_CAEEL (NEDD8-activating enzyme E1 catalytic subunit OS=Caenorhabditis elegans GN=uba-3 PE=2 SV=2)

HSP 1 Score: 218.394 bits (555), Expect = 3.024e-56
Identity = 111/179 (62.01%), Postives = 130/179 (72.63%), Query Frame = 1
Query:  175 PTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIXLFPPQ 711
            P F PG E  + LQ   +ILV+GAGGLGCELLK+LALSGF+ +EVIDMD I+VSNLNRQFLFR  DVGK KAEVAA  V +RV G  +  H CRIEDK   FY  F+II+ GLDSI AR +IN + C  +    D KP E TI PM+DGGTEGFKG+ARVI P  T C +CT+ L+PPQ
Sbjct:   28 PWFVPGPENFEALQN-TKILVIGAGGLGCELLKNLALSGFRTIEVIDMDTIDVSNLNRQFLFRESDVGKSKAEVAAAFVQQRVVGCQVTAHNCRIEDKGQEFYRKFSIIICGLDSIPARRWINGMLCDLVLEMADGKPDENTIIPMIDGGTEGFKGNARVIYPKFTACIDCTLDLYPPQ 205          
BLAST of DR403971 vs. ExPASy Swiss-Prot
Match: UBA3_DICDI (NEDD8-activating enzyme E1 catalytic subunit OS=Dictyostelium discoideum GN=uba3 PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 3.949e-56
Identity = 103/188 (54.79%), Postives = 137/188 (72.87%), Query Frame = 1
Query:  160 GNLVGPTFEPGTE----LRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIXLFPPQ 711
            G    P+FEP T+    + + LQ   ++LV+GAGGLGCE+LK+LALSGF+N++VIDMD I++SNLNRQFLFR +DVGK KAEVAA  +  R++G N+ PH CRI+DKD  +Y  F I++ GLDSIEAR +IN +  + +          +TI P+VDGGTEGFKG ARVI+P ++ CFEC++  FPPQ
Sbjct:   25 GPFASPSFEPDTKASPNIMNGLQNDFKVLVIGAGGLGCEILKNLALSGFRNIDVIDMDTIDISNLNRQFLFRRKDVGKSKAEVAAAFINSRITGCNVTPHKCRIQDKDEDYYRQFKIVIAGLDSIEARRWINGLLVNLVVVNDSGDIEPDTIIPLVDGGTEGFKGQARVILPKISSCFECSLDAFPPQ 212          
BLAST of DR403971 vs. ExPASy Swiss-Prot
Match: UBA3_DANRE (NEDD8-activating enzyme E1 catalytic subunit OS=Danio rerio GN=uba3 PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.149e-55
Identity = 107/184 (58.15%), Postives = 138/184 (75.00%), Query Frame = 1
Query:  160 GNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIXLFPPQ 711
            G    P FE  TE    L +  +ILV+GAGGLGCELLKDLALSGF+++ V+DMD I+VSNLNRQFLFR +DVG+PKAEVAA  V +RV G ++VPHF +I+D D +FY  F+I+V GLDS+ AR ++N +  S L YE D      +I P++DGGTEGFKG+ARVI+PG+T C +CT+ L+PPQ
Sbjct:   48 GPFTHPDFEASTESLQFLLDTCKILVIGAGGLGCELLKDLALSGFRHIHVVDMDTIDVSNLNRQFLFRPKDVGRPKAEVAADFVNDRVPGCSVVPHFKKIQDLDETFYRQFHIVVCGLDSVIARRWMNGMLLSLLIYE-DGVLDPSSIIPLIDGGTEGFKGNARVILPGMTACIDCTLELYPPQ 230          
BLAST of DR403971 vs. ExPASy Swiss-Prot
Match: UBA3_DROME (NEDD8-activating enzyme E1 catalytic subunit OS=Drosophila melanogaster GN=CG13343 PE=1 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 3.129e-53
Identity = 103/177 (58.19%), Postives = 126/177 (71.19%), Query Frame = 1
Query:  181 FEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIXLFPPQ 711
            F   +E  + LQ   ++L++GAGGLGCELLKDLAL GF NL VIDMD IE+SNLNRQFLFR  D+G  KAE AA+ +  RV    + PHF +I+D D SFY  F+++V GLDSI AR +IN +  S L YE D      +I PM+DGGTEGFKG+ARVI+PG T C ECT+ LFPPQ
Sbjct:   35 FAASSENLEFLQTKCQVLIIGAGGLGCELLKDLALMGFGNLHVIDMDTIELSNLNRQFLFRRTDIGASKAECAARFINARVPTCRVTPHFKKIQDFDESFYQQFHLVVCGLDSIVARRWINGMLLSMLRYEEDGTIDTSSIVPMIDGGTEGFKGNARVILPGFTACIECTLDLFPPQ 211          
BLAST of DR403971 vs. ExPASy Swiss-Prot
Match: UBA3_SCHPO (NEDD8-activating enzyme E1 catalytic subunit OS=Schizosaccharomyces pombe GN=uba3 PE=1 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.248e-43
Identity = 82/163 (50.31%), Postives = 119/163 (73.01%), Query Frame = 1
Query:  223 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIXLFPPQ 711
            ++IL++GAGGLGCE+LKDLALSGF++L VIDMD I+++NLNRQFLF   ++ +PKA VAA  +M+R+    + P + +I+DK I FY +F +I+ GLDS+EAR +IN+   +    +T D      + P+VDGG+EG KG ARVIIP +T C+EC++ +  P+
Sbjct:   45 SKILIIGAGGLGCEILKDLALSGFRDLSVIDMDTIDITNLNRQFLFNESNIDEPKANVAASMIMKRIPSTVVTPFYGKIQDKTIEFYKEFKLIICGLDSVEARRWINSTLVAIA--KTGD------LIPLVDGGSEGLKGQARVIIPTITSCYECSLDMLTPK 199          
The following BLAST results are available for this feature:
BLAST of DR403971 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
UBA3_ARATH6.674e-8884.78NEDD8-activating enzyme E1 catalytic subunit OS=Ar... [more]
UBA3_RAT1.773e-5658.92NEDD8-activating enzyme E1 catalytic subunit OS=Ra... [more]
UBA3_MOUSE1.773e-5658.92NEDD8-activating enzyme E1 catalytic subunit OS=Mu... [more]
UBA3_PONAB2.315e-5658.38NEDD8-activating enzyme E1 catalytic subunit OS=Po... [more]
UBA3_HUMAN2.315e-5658.38NEDD8-activating enzyme E1 catalytic subunit OS=Ho... [more]
UBA3_CAEEL3.024e-5662.01NEDD8-activating enzyme E1 catalytic subunit OS=Ca... [more]
UBA3_DICDI3.949e-5654.79NEDD8-activating enzyme E1 catalytic subunit OS=Di... [more]
UBA3_DANRE1.149e-5558.15NEDD8-activating enzyme E1 catalytic subunit OS=Da... [more]
UBA3_DROME3.129e-5358.19NEDD8-activating enzyme E1 catalytic subunit OS=Dr... [more]
UBA3_SCHPO2.248e-4350.31NEDD8-activating enzyme E1 catalytic subunit OS=Sc... [more]

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Properties
Property NameValue
Genbank descriptionCSAH-PNP1246N22 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone CSAH-PNP1246N22 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403971 ID=DR403971; Name=DR403971; organism=Citrus sinensis; type=EST; length=713bp
GGGGACAGACCCAGCGTCAAAGCCAAGCTATCAGCATATTTTCGCAACGG
CTAAATCAGAACCAAATACAGTGATAGTAAGCGAGTGTGAGAATTGTTGC
AAATGGCTGACACGGCACCGAGCCGATCCCGAGACCTAGACAAGCTCTTA
CTCCGAGCCGGCAATCTCGTGGGCCCCACTTTCGAACCCGGCACAGAATT
GAGAGATGACTTACAAGAATATGCGCGAATTTTGGTTGTTGGAGCCGGTG
GATTGGGCTGCGAATTGTTGAAAGACTTAGCTTTATCGGGTTTTAAAAAC
CTAGAGGTCATTGATATGGACCGTATCGAAGTTTCGAATCTCAATCGCCA
GTTTCTTTTCAGGATGGAAGATGTTGGTAAGCCAAAGGCAGAGGTGGCAG
CAAAGCGTGTCATGGAGAGAGTTAGTGGTGTAAATATTGTCCCACATTTT
TGCCGAATTGAGGATAAAGACATTTCATTTTACAATGATTTTAATATCAT
TGTCCTTGGTCTCGATTCCATCGAGGCTCGGAGCTATATAAATGCTGTAG
CATGTAGTTTTCTTGAATATGAGACTGATGACAAGCCACGAGAAGAAACA
ATCAAACCCATGGTAGATGGGGGTACTGAAGGTTTTAAGGGTCATGCAAG
GGTTATTATACCAGGAGTCACACCGTGCTTTGAGTGTACCATCTGNCTTT
TCCCCCCTCAAGT
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