CX069629

Overview
NameCX069629
Unique NameCX069629
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length807
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX069629_ssr720 microsatellite CX069629_ssr720:720..734. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4300 contig Csv1_Contig4300:1..808. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069629 vs. ExPASy Swiss-Prot
Match: MUB3_ARATH (Membrane-anchored ubiquitin-fold protein 3 OS=Arabidopsis thaliana GN=MUB3 PE=1 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.512e-52
Identity = 92/118 (77.97%), Postives = 110/118 (93.22%), Query Frame = 3
Query:  228 MPDEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVVVQPSLAKTKTEKKIDDSPRKIVCSCSIL 581
            MP+EE IDIKFRLYDGSDIGPFRYS+ASTVD LKQR+VSDWPKGKT+VPK + E+KLISSGKILENNKTVGQCK P+G++ GGVI+MHVVVQPSLAK+KTEKK+D +P+ ++C+C+IL
Sbjct:    1 MPEEESIDIKFRLYDGSDIGPFRYSAASTVDFLKQRVVSDWPKGKTVVPKGINEVKLISSGKILENNKTVGQCKTPFGDIAGGVIVMHVVVQPSLAKSKTEKKVDKAPKAVICTCTIL 118          
BLAST of CX069629 vs. ExPASy Swiss-Prot
Match: MUB4_ARATH (Membrane-anchored ubiquitin-fold protein 4 OS=Arabidopsis thaliana GN=MUB4 PE=1 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.338e-37
Identity = 72/120 (60.00%), Postives = 98/120 (81.67%), Query Frame = 3
Query:  228 MPDEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVVVQPSLAKTKTEKKI--DDSPRKIVCSCSIL 581
            MP+E+L+++KFRLYDGSD+GPF+YS  +TV MLK+RIVS+WPK K IVPK+ ++IKLI++GKILEN KTV QCK P+ ++P  VI MHVVVQ S  K + EKKI  +++P++  CSC+I+
Sbjct:    1 MPEEDLVELKFRLYDGSDVGPFQYSPTATVSMLKERIVSEWPKDKKIVPKSASDIKLINAGKILENGKTVAQCKAPFDDLPKSVITMHVVVQLSPTKARPEKKIEKEEAPQRSFCSCTIM 120          
BLAST of CX069629 vs. ExPASy Swiss-Prot
Match: MUB4_ORYSJ (Membrane-anchored ubiquitin-fold protein 4 OS=Oryza sativa subsp. japonica GN=MUB4 PE=2 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 2.612e-33
Identity = 66/116 (56.90%), Postives = 89/116 (76.72%), Query Frame = 3
Query:  237 EELIDIKFRLYDGSDIGPFRYSS-ASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVVVQPSLAKTKTEKKIDDSPRKIVCSCSIL 581
            +E +++KFRL+DGSDIGP R ++ A+TV  LK R+V+DWPK KTIVPK   ++KLIS GKILEN+K + QC+ P+G++P   I MHVVVQPS AK+K +KK +  P+   CSC+IL
Sbjct:   20 DEEVEVKFRLFDGSDIGPLRCNAVATTVAALKDRVVADWPKDKTIVPKTANDVKLISGGKILENDKNIAQCRAPFGDLPSTAITMHVVVQPSSAKSKPDKKTNKLPKTTRCSCTIL 135          
BLAST of CX069629 vs. ExPASy Swiss-Prot
Match: MUB3_ORYSJ (Membrane-anchored ubiquitin-fold protein 3 OS=Oryza sativa subsp. japonica GN=MUB3 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 6.022e-30
Identity = 58/115 (50.43%), Postives = 88/115 (76.52%), Query Frame = 3
Query:  237 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVVVQPSLAKTKTEKKIDDSPRKIVCSCSIL 581
            +E I++KFRL+DG+DIGP +Y  ++TV  LK+ I++ WP+ K I PK V ++KLI++G+ILENN+T+ + ++P GEVPGGVI MHVVV+P      +EK++ +SP++  C C+IL
Sbjct:    5 KEPIEVKFRLFDGTDIGPSKYDPSTTVSALKEFILARWPQDKEITPKTVNDLKLINAGRILENNRTLAESRVPVGEVPGGVITMHVVVRPPQPDKNSEKQLANSPKQNRCGCTIL 119          
BLAST of CX069629 vs. ExPASy Swiss-Prot
Match: MUB5_ARATH (Membrane-anchored ubiquitin-fold protein 5 OS=Arabidopsis thaliana GN=MUB5 PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.658e-29
Identity = 64/120 (53.33%), Postives = 84/120 (70.00%), Query Frame = 3
Query:  228 MPDEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCK--IPYGEVPGGVIIMHVVVQPSLAKTKTEKKIDDSPRKIVCSCSIL 581
            M DE+LI++KFRL DG+DIGP +YS   TV  LK++I++ WPK K   PK + E+KLI+ GKILENNKT+ + +  I  GE+PG V  MHVV++P L + K EK  +D PRK  C C IL
Sbjct:    1 MGDEDLIELKFRLADGTDIGPSKYSQFMTVASLKEKIIAQWPKDKENAPKMINEVKLINGGKILENNKTLSEARSLITIGELPGIVTTMHVVLRPPLFEKKKEKLQNDPPRKSHCVCCIL 120          
BLAST of CX069629 vs. ExPASy Swiss-Prot
Match: MUB6_ARATH (Membrane-anchored ubiquitin-fold protein 6 OS=Arabidopsis thaliana GN=MUB6 PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.813e-26
Identity = 54/116 (46.55%), Postives = 83/116 (71.55%), Query Frame = 3
Query:  234 DEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVVVQPSLAKTKTEKKIDDSPRKIVCSCSIL 581
            +E+ I++KFRL DG+DIGP +Y+ + TV  LK++++S WPK K   PK V ++KLI++GKILENN+T+ + ++P  E+PG +I MH+V++      K+EK  +D P K  C C+IL
Sbjct:    4 EEDWIELKFRLADGTDIGPSKYNQSMTVSSLKEKLISQWPKDKENTPKTVNDMKLINAGKILENNRTLAESRLPVCELPGMIITMHIVLRLPTLDKKSEKLQNDPPMKNRCVCTIL 119          
BLAST of CX069629 vs. ExPASy Swiss-Prot
Match: MUB1_ORYSJ (Membrane-anchored ubiquitin-fold protein 1 OS=Oryza sativa subsp. japonica GN=MUB1 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.100e-23
Identity = 55/115 (47.83%), Postives = 77/115 (66.96%), Query Frame = 3
Query:  237 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVVVQPSLAKTKTEKKIDDSPRKIVCSCSIL 581
            +E  +IKFRL DG+DIGP RY +ASTV  LK+ IV+ WPK K   P+ V ++KLI++GKILENNKT+ +CK P  +   G+  MHVVV+   +  ++ K +   P+   C CSI+
Sbjct:    6 QEQFEIKFRLPDGTDIGPKRYPAASTVATLKESIVAQWPKDKEKGPRTVNDLKLINAGKILENNKTLSECKSPICDF-SGLTTMHVVVRAPTSDKQSNKIVAKKPKDFRCGCSIM 119          
BLAST of CX069629 vs. ExPASy Swiss-Prot
Match: MUB2_ARATH (Membrane-anchored ubiquitin-fold protein 2 OS=Arabidopsis thaliana GN=MUB2 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.437e-23
Identity = 55/115 (47.83%), Postives = 74/115 (64.35%), Query Frame = 3
Query:  237 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVVVQPSLA---KTKTEKKIDDSPRKIVCSC 572
            ++ ++IKFRL DGSDIGP  +  A+TV  LK+ +V+ WP+ K   PK V ++KLIS+G+ILENNKTVG C+ P G   G V  MHV++Q  +    K K + K D    K VC C
Sbjct:    5 KDQLEIKFRLNDGSDIGPKLFPDATTVATLKETVVAQWPRDKENGPKTVKDVKLISAGRILENNKTVGDCRSPVGNFSGAVTTMHVIIQHQVTEKEKKKKKPKGDLKQNKCVCLC 119          
BLAST of CX069629 vs. ExPASy Swiss-Prot
Match: MUB1_ARATH (Membrane-anchored ubiquitin-fold protein 1 OS=Arabidopsis thaliana GN=MUB1 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.216e-22
Identity = 52/112 (46.43%), Postives = 74/112 (66.07%), Query Frame = 3
Query:  246 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVVVQPSLAKTKTEKKIDDSPRKIVCSCSIL 581
            ++IKFRL DGSDIGP  +  A+TV  LK+ ++S+WP+ K   PK V E+KLIS+GK+LEN+KTV   + P   + G V  MHV++Q  +  T+ EKK    P+   C CS++
Sbjct:    8 LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAVTTMHVIIQAPV--TEKEKKPKGDPKMNKCVCSVM 117          
BLAST of CX069629 vs. ExPASy Swiss-Prot
Match: MUB2_ORYSJ (Membrane-anchored ubiquitin-fold protein 2 OS=Oryza sativa subsp. japonica GN=MUB2 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.378e-20
Identity = 46/119 (38.66%), Postives = 79/119 (66.39%), Query Frame = 3
Query:  240 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVVVQPSLAKTKTEKKIDDSPR-----KIVCSCSIL 581
            E ++++FRL DGSDIGP  +  A+TV  LK+ +++ WP+GK I P+ V ++ +I++G++LENN+T+ + +    E P G I MHVVV+    +++ E+++   P+     +I C C+IL
Sbjct:   12 EAVEVRFRLDDGSDIGPSMHDQATTVTALKEFVLARWPQGKEIAPRTVNDVTIINAGQVLENNRTLAESRNLAAESPEGPITMHVVVR----RSRPERRVKQPPKARPPERIGCGCTIL 126          
The following BLAST results are available for this feature:
BLAST of CX069629 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
MUB3_ARATH2.512e-5277.97Membrane-anchored ubiquitin-fold protein 3 OS=Arab... [more]
MUB4_ARATH1.338e-3760.00Membrane-anchored ubiquitin-fold protein 4 OS=Arab... [more]
MUB4_ORYSJ2.612e-3356.90Membrane-anchored ubiquitin-fold protein 4 OS=Oryz... [more]
MUB3_ORYSJ6.022e-3050.43Membrane-anchored ubiquitin-fold protein 3 OS=Oryz... [more]
MUB5_ARATH6.658e-2953.33Membrane-anchored ubiquitin-fold protein 5 OS=Arab... [more]
MUB6_ARATH1.813e-2646.55Membrane-anchored ubiquitin-fold protein 6 OS=Arab... [more]
MUB1_ORYSJ1.100e-2347.83Membrane-anchored ubiquitin-fold protein 1 OS=Oryz... [more]
MUB2_ARATH1.437e-2347.83Membrane-anchored ubiquitin-fold protein 2 OS=Arab... [more]
MUB1_ARATH1.216e-2246.43Membrane-anchored ubiquitin-fold protein 1 OS=Arab... [more]
MUB2_ORYSJ7.378e-2038.66Membrane-anchored ubiquitin-fold protein 2 OS=Oryz... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_11G11_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11G11-N21-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069629 ID=CX069629; Name=CX069629; organism=Citrus sinensis; type=EST; length=807bp
GTCTTCTTCAGCTCACCAGCAGCAACAAGCGCCGATCCTTTCAGAACAAC
CATAAGAGGAAAAAAAGTATATTTAAATTAAATATTACTTAAATTAAAAA
AGGAAAGTTTTAGCTCGATCGTCAGCTAAACAGATACAAGAGGCGGCCAA
GATCTGATGAGCTGGATCGAAGAGGGTTCAGTGACGTGGAAGTGATTGAT
TCGAGAATTTGAAGTCAAGTGAATCAAATGCCGGACGAGGAATTGATTGA
TATAAAGTTCAGGTTGTATGATGGGTCCGATATCGGTCCTTTCCGTTACT
CGTCGGCGTCAACGGTCGACATGCTTAAGCAGCGAATCGTCTCTGATTGG
CCCAAAGGCAAGACAATTGTGCCAAAAGCAGTGACTGAAATCAAATTGAT
AAGCTCTGGTAAAATCTTGGAGAATAACAAGACTGTTGGTCAGTGTAAAA
TACCCTATGGTGAGGTACCAGGTGGTGTTATTATAATGCATGTTGTTGTA
CAGCCTTCTCTAGCAAAGACTAAAACAGAAAAGAAGATCGATGATTCGCC
CAGGAAAATTGTCTGCTCTTGTTCTATATTGTGAAGGAATGAATTTTAGT
TGGAAAATTTGTTTATCTTGGTTGAATGTTAATACAAGCCTTTCCTCGAG
GCGTCATGTCTTCATTGTTGCTGTATTCTTGTGTACAAGTGCCCAATGGA
ATCTGATGATTTGCTCTTTTTTTATTTTATTTTATTTTCTTTTTCCCCCT
CATTATCCTGAATTATTGTGACAGTTATCGTAGCTGTATGGGCTACCATA
TGTAAAG
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