CX069617

Overview
NameCX069617
Unique NameCX069617
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length811
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3530 contig Csv1_Contig3530:1311..2121. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069617 vs. ExPASy Swiss-Prot
Match: ILV5_PEA (Ketol-acid reductoisomerase, chloroplastic OS=Pisum sativum GN=PGAAIR PE=2 SV=1)

HSP 1 Score: 358.221 bits (918), Expect = 3.049e-98
Identity = 177/192 (92.19%), Postives = 187/192 (97.40%), Query Frame = -3
Query:  234 VAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLHPFTAGVYVALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDNDAPINGDLISNFLSDPVHGAIEVCAQLRPTVDISVPPDADFVRPELRQGSN 809
            VA+GSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPL+PFTAGV+VA+MMAQIE+LRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVD+ APIN DLISNF+SDPVHGAI+VCA+LRPT+DISVP  ADFVRPELRQ SN
Sbjct:  390 VASGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLYPFTAGVFVAMMMAQIEVLRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDSGAPINQDLISNFVSDPVHGAIQVCAELRPTLDISVPAAADFVRPELRQCSN 581          
BLAST of CX069617 vs. ExPASy Swiss-Prot
Match: ILV5_ARATH (Ketol-acid reductoisomerase, chloroplastic OS=Arabidopsis thaliana GN=At3g58610 PE=2 SV=2)

HSP 1 Score: 358.221 bits (918), Expect = 3.049e-98
Identity = 179/192 (93.23%), Postives = 183/192 (95.31%), Query Frame = -3
Query:  234 VAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLHPFTAGVYVALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDNDAPINGDLISNFLSDPVHGAIEVCAQLRPTVDISVPPDADFVRPELRQGSN 809
            V +GSEIRSVVLAGRRFYEKEGLPAFPMG IDQTRMWKVGERVR +RPAGDLGPL+PFTAGVYVALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVD+ A IN DLISNF SDPVHGAIEVCAQLRPTVDISVP DADFVRPELRQ SN
Sbjct:  400 VQSGSEIRSVVLAGRRFYEKEGLPAFPMGNIDQTRMWKVGERVRKSRPAGDLGPLYPFTAGVYVALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDSGAAINRDLISNFFSDPVHGAIEVCAQLRPTVDISVPADADFVRPELRQSSN 591          
BLAST of CX069617 vs. ExPASy Swiss-Prot
Match: ILV5_ORYSJ (Ketol-acid reductoisomerase, chloroplastic OS=Oryza sativa subsp. japonica GN=Os05g0573700 PE=1 SV=1)

HSP 1 Score: 356.295 bits (913), Expect = 1.158e-97
Identity = 175/191 (91.62%), Postives = 182/191 (95.29%), Query Frame = -3
Query:  237 VAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLHPFTAGVYVALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDNDAPINGDLISNFLSDPVHGAIEVCAQLRPTVDISVPPDADFVRPELRQGS 809
            VA+GSEIRSVVLAGRRFYEKEGLPAFPMG IDQTRMWKVGE+VRSTRP  DLGPLHPFTAGVYVALMMAQIE+LRKKGHSYSEIINESVIESVDSLNPFMHARGV+FMVDNCSTTARLGSRKWAPRFDYILTQQA V VD DAPIN DLISNF+SDPVHGAIEVCA+LRPTVDISVP +ADFVRPELRQ S
Sbjct:  388 VASGSEIRSVVLAGRRFYEKEGLPAFPMGNIDQTRMWKVGEKVRSTRPENDLGPLHPFTAGVYVALMMAQIEVLRKKGHSYSEIINESVIESVDSLNPFMHARGVAFMVDNCSTTARLGSRKWAPRFDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAIEVCAELRPTVDISVPANADFVRPELRQSS 578          
BLAST of CX069617 vs. ExPASy Swiss-Prot
Match: ILV5_SPIOL (Ketol-acid reductoisomerase, chloroplastic OS=Spinacia oleracea GN=AHRI PE=1 SV=1)

HSP 1 Score: 351.673 bits (901), Expect = 2.853e-96
Identity = 176/189 (93.12%), Postives = 182/189 (96.30%), Query Frame = -3
Query:  243 VAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLHPFTAGVYVALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDNDAPINGDLISNFLSDPVHGAIEVCAQLRPTVDISVPPDADFVRPELRQ 809
            VA+GSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGE+VRS RPAGDLGPL+PFTAGVYVALMMAQIEILRKKGHSYSEIINESVIE+VDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYIL+QQALVAVDN APIN DLISNFLSDPVH AI VCAQLRP+VDISV  DADFVRPELRQ
Sbjct:  406 VASGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGEKVRSVRPAGDLGPLYPFTAGVYVALMMAQIEILRKKGHSYSEIINESVIEAVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILSQQALVAVDNGAPINQDLISNFLSDPVHEAIGVCAQLRPSVDISVTADADFVRPELRQ 594          
BLAST of CX069617 vs. ExPASy Swiss-Prot
Match: ILV5_NEUCR (Ketol-acid reductoisomerase, mitochondrial OS=Neurospora crassa GN=ilv-2 PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.829e-11
Identity = 39/86 (45.35%), Postives = 53/86 (61.63%), Query Frame = -3
Query:  366 LMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDN---DAPINGD 614
            + +AQ E+LR++GHS SE  NE+V E+  SL P + A G+ +M D CSTTAR G+  W P+F     + AL  V N   D+  NGD
Sbjct:  276 MFLAQYEVLRERGHSPSEAFNETVEEATQSLYPLIGAHGMDWMFDACSTTARRGAIDWTPKF-----KDALKPVFNNLYDSVKNGD 356          
The following BLAST results are available for this feature:
BLAST of CX069617 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
ILV5_PEA3.049e-9892.19Ketol-acid reductoisomerase, chloroplastic OS=Pisu... [more]
ILV5_ARATH3.049e-9893.23Ketol-acid reductoisomerase, chloroplastic OS=Arab... [more]
ILV5_ORYSJ1.158e-9791.62Ketol-acid reductoisomerase, chloroplastic OS=Oryz... [more]
ILV5_SPIOL2.853e-9693.12Ketol-acid reductoisomerase, chloroplastic OS=Spin... [more]
ILV5_NEUCR2.829e-1145.35Ketol-acid reductoisomerase, mitochondrial OS=Neur... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_11F12_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11F12-L23-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069617 ID=CX069617; Name=CX069617; organism=Citrus sinensis; type=EST; length=811bp
TTTTTTGTCAGCACATTCCTCGGAAACATACTATTATTCCACCAAATTCA
AAAACCAGAAAGCATATTCTCATGTCTTCTTCAACCAAACCGGACATAGT
GCAACACTCGCCCAGCAAAACTAAATAAATAAGCAGCAACTCACACGACT
AAGCAAAGTCTCTATCTACAATATCCCTAGGGGAAATTATTTTTTGGGCT
AGAAACAAAAAGTTAAGGATTCACCAGGACTCAATTGCTACCCTGACGCA
ACTCTGGGCGCACAAAATCTGCATCTGGTGGCACTGAAATGTCAACAGTT
GGTCTCAACTGAGCACAGACTTCAATGGCTCCATGGACTGGATCAGAAAG
GAAGTTGCTGATGAGATCCCCATTGATGGGGGCATCATTGTCCACTGCCA
CCAAGGCTTGTTGTGTCAGGATGTAATCAAAACGAGGGGCCCATTTCCTT
GATCCCAAACGGGCTGTTGTAGAGCAGTTGTCGACCATAAATGAAACTCC
ACGAGCATGCATGAATGGATTCAATGAATCCACCGACTCAATCACACTTT
CATTGATGATCTCAGAATAGGAGTGCCCTTTCTTCCTCAGGATCTCAATC
TGGGCCATCATCAGAGCCACATAGACACCTGCTGTGAATGGGTGTAATGG
GCCTAAGTCACCTGCTGGACGTGTTGATCGGACTCGCTCACCAACTTTCC
ACATGCGAGTCTGATCAATTTTTCCCATAGGGAAAGCTGGTAGACCTTCC
TTTTCATAAAACCGACGTCCAGCCAAGACAACACTGCGGATCTCACTGCC
AGCGGCCACAT
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