DR403930

Overview
NameDR403930
Unique NameDR403930
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6144 contig Csv1_Contig6144:1..706. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403930 vs. ExPASy Swiss-Prot
Match: KICH_SCHPO (Putative choline kinase OS=Schizosaccharomyces pombe GN=SPAC13G7.12c PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.699e-15
Identity = 45/133 (33.83%), Postives = 72/133 (54.14%), Query Frame = 3
Query:  219 LQVIPLKGAMTNEVYQIAWPAKNNGLVRNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKAL----LWDRLRRWVSVAKS 605
            L +  + GA+TN VY +A P   +     +L+RIYG  VE+F NR  E+   + ++    GP L+G F +GR E+++ + TL+   IRDPK+S  V  ++ E H+  +  P + L     W     W+  AK+
Sbjct:   63 LHIKRISGALTNAVYYVAPPEGYHA--PKLLLRIYGPHVELFINRQVELENLKRLARHNIGPYLIGEFSNGRFEQYMESTTLTCKTIRDPKLSIYVGRRLCELHNFILLHPHEVLEMPAAWKNCLVWLPKAKA 193          
BLAST of DR403930 vs. ExPASy Swiss-Prot
Match: CHKB_MOUSE (Choline/ethanolamine kinase OS=Mus musculus GN=Chkb PE=1 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 1.552e-12
Identity = 46/163 (28.22%), Postives = 87/163 (53.37%), Query Frame = 3
Query:  213 DALQVIPLKGAMTNEVYQIAWP---AKNNGLVRNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRK-ALLWDRLRRWVSVAKSF--CSAKDAKEFCLYTLKDEISMLEKEL 683
            + L V P+ G ++N +++ + P       G  R VL+R+YG  ++   +   E   F  ++ +  GP+L G F +GR+E+++ +R L   ++RDP +S  +A +M  FH ++MP  ++   L+  + R++   +     S        +Y+LKDE++ L K L
Sbjct:   67 EELSVCPVSGGLSNLLFRCSLPNHVPSVGGEPREVLLRLYGAILQGVDSLVLESVMFAILAERSLGPQLYGVFPEGRLEQYLPSRPLKTQELRDPVLSGAIATRMARFHGMEMPFTKEPRWLFGTMERYLKQIQDLPSTSLPQMNLVEMYSLKDEMNSLRKLL 229          
BLAST of DR403930 vs. ExPASy Swiss-Prot
Match: CHKB_RAT (Choline/ethanolamine kinase OS=Rattus norvegicus GN=Chkb PE=1 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 3.458e-12
Identity = 45/159 (28.30%), Postives = 85/159 (53.46%), Query Frame = 3
Query:  213 DALQVIPLKGAMTNEVYQIAWP---AKNNGLVRNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRK-ALLWDRLRRWVSVAKSF--CSAKDAKEFCLYTLKDEISML 671
            + L V P+ G ++N +++ + P       G  R VL+R+YG  ++   +   E   F  ++ +  GP+L G F +GR+E+++ +R L   ++RDP +S  +A KM  FH ++MP  ++   L+  + R++   +     S        +Y+LKDE++ L
Sbjct:   67 EELSVCPVSGGLSNLLFRCSLPNHVPSMGGEPREVLLRLYGAILQGVDSLVLESVMFAILAERSLGPQLYGVFPEGRLEQYLPSRPLKTQELRDPVLSGAIATKMARFHGMEMPFTKEPRWLFGTMERYLKQIQDLPSTSLPQMNLVEMYSLKDEMNHL 225          
BLAST of DR403930 vs. ExPASy Swiss-Prot
Match: CHKB_HUMAN (Choline/ethanolamine kinase OS=Homo sapiens GN=CHKB PE=1 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 4.516e-12
Identity = 45/163 (27.61%), Postives = 88/163 (53.99%), Query Frame = 3
Query:  213 DALQVIPLKGAMTNEVYQIAWPAKNNGL---VRNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKA-LLWDRLRRWVSVAKSF--CSAKDAKEFCLYTLKDEISMLEKEL 683
            + L+V P+ G ++N +++ + P     +    R VL+R+YG  ++   +   E   F  ++ +  GP+L G F +GR+E++I +R L   ++R+P +S  +A KM +FH ++MP  ++   L+  + R++   +        +     +Y+LKDE+  L K L
Sbjct:   67 EELRVYPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAILQGVDSLVLESVMFAILAERSLGPQLYGVFPEGRLEQYIPSRPLKTQELREPVLSAAIATKMAQFHGMEMPFTKEPHWLFGTMERYLKQIQDLPPTGLPEMNLLEMYSLKDEMGNLRKLL 229          
BLAST of DR403930 vs. ExPASy Swiss-Prot
Match: KICH_YEAST (Choline kinase OS=Saccharomyces cerevisiae GN=CKI1 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.703e-12
Identity = 42/148 (28.38%), Postives = 81/148 (54.73%), Query Frame = 3
Query:  162 KVLQSVASDWGDVIDDSDALQVIPLKGAMTNEVYQIAWPAKNNGLVRNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDGRVEEFI-HARTLSAADIRDPKISELVAAKMREFHD----LKMPGPRKALLWDRLRRWV 590
            K +Q VA D          + ++ + GAMTN ++++ +P      + ++L+RIYG  ++   +R+ E++    +S +  GP L G F +GR E+F+ +++TL+  DIR+ K S+ +A +M+E H     L       +  W ++ +W+
Sbjct:  139 KKIQPVAQD----------MNLVKISGAMTNAIFKVEYPK-----LPSLLLRIYGPNIDNIIDREYELQILARLSLKNIGPSLYGCFVNGRFEQFLENSKTLTKDDIRNWKNSQRIARRMKELHVGVPLLSSERKNGSACWQKINQWL 271          
The following BLAST results are available for this feature:
BLAST of DR403930 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
KICH_SCHPO5.699e-1533.83Putative choline kinase OS=Schizosaccharomyces pom... [more]
CHKB_MOUSE1.552e-1228.22Choline/ethanolamine kinase OS=Mus musculus GN=Chk... [more]
CHKB_RAT3.458e-1228.30Choline/ethanolamine kinase OS=Rattus norvegicus G... [more]
CHKB_HUMAN4.516e-1227.61Choline/ethanolamine kinase OS=Homo sapiens GN=CHK... [more]
KICH_YEAST7.703e-1228.38Choline kinase OS=Saccharomyces cerevisiae GN=CKI1... [more]
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Properties
Property NameValue
Genbank descriptionCSAH-PNP1246L17 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone CSAH-PNP1246L17 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403930 ID=DR403930; Name=DR403930; organism=Citrus sinensis; type=EST; length=706bp
GGGGGCCTTGCTTTCATCGTTCCTGACAACTCAGTTTTTCTCTTCCTCTT
AGGTGAAGTTTTCAATTTTTGTTGCAATCACCACTTTGTGCTGAGCTGAC
TACAAGAATGGCTATAAAGACAACTGAATTGTTACCAAGTTCTTCTCCAG
AAGAATTAAAGAAAGTTCTTCAATCAGTTGCTTCCGACTGGGGAGATGTT
ATCGATGATTCGGATGCATTGCAGGTGATTCCATTAAAAGGTGCAATGAC
TAATGAGGTTTACCAAATAGCGTGGCCTGCAAAAAATAATGGTCTTGTTA
GAAACGTTTTGGTCCGGATTTATGGAGAAGGCGTCGAGGTTTTCTTCAAT
AGGGATGATGAAATTAGAACCTTTGAGTGCATGTCAAGCCAAGGCCAGGG
GCCCAGGCTTCTCGGGCGGTTCGGTGATGGAAGAGTTGAGGAGTTCATTC
ATGCCAGGACACTGTCGGCTGCTGACATCCGTGACCCCAAAATCTCTGAG
TTGGTAGCGGCAAAGATGAGAGAATTTCATGATCTCAAAATGCCTGGTCC
AAGGAAAGCACTACTATGGGACAGACTGAGGAGATGGGTTAGTGTGGCCA
AAAGTTTCTGTTCTGCTAAAGATGCAAAGGAATTCTGCTTGTATACTCTG
AAGGATGAAATCAGTATGCTGGAGAAAGAGTTGCCAAATGACCATCAAGA
GATTGG
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