CX069593

Overview
NameCX069593
Unique NameCX069593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length844
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1643 contig Csv1_Contig1643:717..1559. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069593 vs. ExPASy Swiss-Prot
Match: PSD11_MOUSE (26S proteasome non-ATPase regulatory subunit 11 OS=Mus musculus GN=Psmd11 PE=1 SV=3)

HSP 1 Score: 263.462 bits (672), Expect = 1.090e-69
Identity = 133/232 (57.33%), Postives = 171/232 (73.71%), Query Frame = 1
Query:    1 LTAARTAANAIYVPPAQQGTIDLQSGILHA-EEKDYKTAYSYXXXXXXXXNALEDPRAVFSLKYMLLCKIMVSQADDVAGIISSKAGLQYVGPELDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFEDPKADAIYPATLETISNMGKVVDSLFVRSAKI 693
            LT+ART ANAIY PP  Q T+D+QSGI+HA EEKD+KTAYSY        ++++ P+A+ SLKYMLLCKIM++  +DV  ++S K  L+Y G + +A+K VA A   RSL  FE AL D++A+L +DPI+  HL+ LYD LLEQNL R+IEP+SRV+I HI+ LI+L    VE+KLSQMILDKKF G LDQG G LIIF++P  D  Y A LETI NM KVVDSL+ ++ K+
Sbjct:  190 LTSARTTANAIYCPPKLQATLDMQSGIIHAAEEKDWKTAYSYFYEAFEGYDSIDSPKAITSLKYMLLCKIMLNTPEDVQALVSGKLALRYAGRQTEALKCVAQASKNRSLADFEKALTDYRAELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISSLIKLSKADVERKLSQMILDKKFHGILDQGEGVLIIFDEPPVDKTYEAALETIQNMSKVVDSLYSKAKKL 421          
BLAST of CX069593 vs. ExPASy Swiss-Prot
Match: PSD11_HUMAN (26S proteasome non-ATPase regulatory subunit 11 OS=Homo sapiens GN=PSMD11 PE=1 SV=3)

HSP 1 Score: 263.077 bits (671), Expect = 1.424e-69
Identity = 133/232 (57.33%), Postives = 171/232 (73.71%), Query Frame = 1
Query:    1 LTAARTAANAIYVPPAQQGTIDLQSGILHA-EEKDYKTAYSYXXXXXXXXNALEDPRAVFSLKYMLLCKIMVSQADDVAGIISSKAGLQYVGPELDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFEDPKADAIYPATLETISNMGKVVDSLFVRSAKI 693
            LT+ART ANAIY PP  Q T+D+QSGI+HA EEKD+KTAYSY        ++++ P+A+ SLKYMLLCKIM++  +DV  ++S K  L+Y G + +A+K VA A   RSL  FE AL D++A+L +DPI+  HL+ LYD LLEQNL R+IEP+SRV+I HI+ LI+L    VE+KLSQMILDKKF G LDQG G LIIF++P  D  Y A LETI NM KVVDSL+ ++ K+
Sbjct:  190 LTSARTTANAIYCPPKLQATLDMQSGIIHAAEEKDWKTAYSYFYEAFEGYDSIDSPKAITSLKYMLLCKIMLNTPEDVQALVSGKLALRYAGRQTEALKCVAQASKNRSLADFEKALTDYRAELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISSLIKLSKADVERKLSQMILDKKFHGILDQGEGVLIIFDEPPVDKTYEAALETIQNMSKVVDSLYNKAKKL 421          
BLAST of CX069593 vs. ExPASy Swiss-Prot
Match: PSD11_BOVIN (26S proteasome non-ATPase regulatory subunit 11 OS=Bos taurus GN=PSMD11 PE=2 SV=3)

HSP 1 Score: 263.077 bits (671), Expect = 1.424e-69
Identity = 133/232 (57.33%), Postives = 171/232 (73.71%), Query Frame = 1
Query:    1 LTAARTAANAIYVPPAQQGTIDLQSGILHA-EEKDYKTAYSYXXXXXXXXNALEDPRAVFSLKYMLLCKIMVSQADDVAGIISSKAGLQYVGPELDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFEDPKADAIYPATLETISNMGKVVDSLFVRSAKI 693
            LT+ART ANAIY PP  Q T+D+QSGI+HA EEKD+KTAYSY        ++++ P+A+ SLKYMLLCKIM++  +DV  ++S K  L+Y G + +A+K VA A   RSL  FE AL D++A+L +DPI+  HL+ LYD LLEQNL R+IEP+SRV+I HI+ LI+L    VE+KLSQMILDKKF G LDQG G LIIF++P  D  Y A LETI NM KVVDSL+ ++ K+
Sbjct:  190 LTSARTTANAIYCPPKLQATLDMQSGIIHAAEEKDWKTAYSYFYEAFEGYDSIDSPKAITSLKYMLLCKIMLNTPEDVQALVSGKLALRYAGRQTEALKCVAQASKNRSLADFEKALTDYRAELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISSLIKLSKADVERKLSQMILDKKFHGILDQGEGVLIIFDEPPVDKTYEAALETIQNMSKVVDSLYNKAKKL 421          
BLAST of CX069593 vs. ExPASy Swiss-Prot
Match: PSD11_DICDI (26S proteasome non-ATPase regulatory subunit 11 OS=Dictyostelium discoideum GN=psmD11 PE=2 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 7.067e-69
Identity = 127/232 (54.74%), Postives = 173/232 (74.57%), Query Frame = 1
Query:    1 LTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYXXXXXXXXNALEDPRAVFSLKYMLLCKIMVSQADDVAGIISSKAGLQYVGPE-LDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFEDPKADAIYPATLETISNMGKVVDSLFVRSAKI 693
            LT+ART AN IY PP  Q  ID+QSGILH+EEKDYKTA+SY        ++LEDP A+ +LKYMLLCKIM +Q DDV  +++ K GL+Y     ++A+  ++ +H+KRSL +F+   ++F  QL +DPI+H HL+ LY  LLEQNLCR+IEP+SRVEI+HIA+LI+LP+D VE+KLS MILDKK+ G LDQG G LI+FE+ K D ++  +LETI  + +VVD L+ ++ K+
Sbjct:  181 LTSARTNANTIYCPPKLQAEIDMQSGILHSEEKDYKTAFSYFFESYETYDSLEDPFAMKALKYMLLCKIMTNQTDDVHALVNGKIGLKYHNNRSIEAITQISKSHAKRSLHMFQEVTKEFSDQLSDDPIIHSHLTELYSNLLEQNLCRIIEPFSRVEISHIAKLIDLPVDVVERKLSLMILDKKYNGILDQGTGTLIVFEEQKEDKLFNCSLETIGALSRVVDLLYEKTNKL 412          
BLAST of CX069593 vs. ExPASy Swiss-Prot
Match: RPN6_SCHPO (Probable 26S proteasome regulatory subunit rpn6 OS=Schizosaccharomyces pombe GN=rpn6 PE=2 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 1.474e-66
Identity = 127/233 (54.51%), Postives = 167/233 (71.67%), Query Frame = 1
Query:    1 LTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYXXXXXXXXNALEDPR-AVFSLKYMLLCKIMVSQADDVAGIISSKAGLQYVGPELDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFEDPKADAIYPATLETISNMGKVVDSLFVRSAKIM 696
            LTAA+T+ANA+Y PP  QG +DLQSGILHA++ D+KTAYSY         +L+D + A+ SLKYMLL +IM++   +V  +++ K  ++Y G +++AM+A+A AH  RSL  FE AL+D+K +L  DPI+  HLSSLYD LLEQNL R++EP+SRVE++HIAELI L    VE KLSQMILDK F G LDQG GCLI++++P+ D  Y A LE I NMG VVD L    A  +
Sbjct:  188 LTAAKTSANAVYCPPMLQGNLDLQSGILHADDMDFKTAYSYFYEAYEGFTSLDDDKKALSSLKYMLLSQIMLNSVSEVKSLLTGKHAIRYAGRDIEAMRAIAQAHENRSLADFEKALQDYKPELASDPIIRSHLSSLYDNLLEQNLLRVVEPFSRVEVSHIAELIGLSTVQVEGKLSQMILDKIFYGILDQGSGCLIVYDEPQQDKTYEAALEVIKNMGTVVDLLIENKASAL 420          
BLAST of CX069593 vs. ExPASy Swiss-Prot
Match: RPN6_YEAST (26S proteasome regulatory subunit RPN6 OS=Saccharomyces cerevisiae GN=RPN6 PE=1 SV=3)

HSP 1 Score: 209.534 bits (532), Expect = 1.868e-53
Identity = 115/234 (49.15%), Postives = 153/234 (65.38%), Query Frame = 1
Query:    1 LTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYXXXXXXXXNALED----PRAVFSLKYMLLCKIMVSQADDVAGIISSKAGLQ-YVGPELDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFEDPKADAIYPATLETISNMGKVVDSLFVRSA 687
            LTAARTAAN+IY P      +DL SGILH E+KDYKTA+SY        + L       +A   LKYMLL KIM++  DDV  I+++K   + Y    +DAMKAVA+A++ RSL  F TAL+ ++ +L  D +   H ++LYDTLLE NLC++IEP+  VEI+HI+++I L    VE KLSQMILDK F G LDQG G L ++E P  DA Y + LE +  + KVVD LF +++
Sbjct:  198 LTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESYHNLTTHNSYEKACQVLKYMLLSKIMLNLIDDVKNILNAKYTKETYQSRGIDAMKAVAEAYNNRSLLDFNTALKQYEKELMGDELTRSHFNALYDTLLESNLCKIIEPFECVEISHISKIIGLDTQQVEGKLSQMILDKIFYGVLDQGNGWLYVYETPNQDATYDSALELVGQLNKVVDQLFEKAS 431          
BLAST of CX069593 vs. ExPASy Swiss-Prot
Match: YMJ5_CAEEL (Uncharacterized protein F59B2.5 OS=Caenorhabditis elegans GN=F59B2.5 PE=2 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 1.536e-39
Identity = 90/233 (38.63%), Postives = 151/233 (64.81%), Query Frame = 1
Query:    1 LTAARTAANAIYVPPAQQGTIDLQSGILH-AEEKDYKTAYSYXXXXXXXXNALEDP-RAVFSLKYMLLCKIMVSQADDVAGIISSKAGLQYV-GPELDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFEDPKADAI--YPATLETISNMGKVVDSLFVRS 684
            L  A+T  N+ +  P  Q ++D+QSG+L+ AEE+DYKT++SY         ++ D   A  +LKYM+LCKIM+++ + +AG++++K  + Y   P + A++++ADA  KRSLK F  AL + K +L ED +V  H  +L   +LE+ + R+IEPYS +E+++IA +I + +  VE+ +++MILDKK  G++DQ    ++++  PKADA   +  +L+TI  + K VD  + R+
Sbjct:  234 LLTAKTNTNSAFASPQLQASVDMQSGVLYSAEERDYKTSFSYFYEAFEGFASIGDKINATSALKYMILCKIMLNETEQLAGLLAAKEIVAYQKSPRIIAIRSMADAFRKRSLKDFVKALAEHKIELVEDKVVAVHSQNLERNMLEKEISRVIEPYSEIELSYIARVIGMTVPPVERAIARMILDKKLMGSIDQHGDTVVVY--PKADAANQFTRSLKTIRELTKTVDVSYSRT 464          
BLAST of CX069593 vs. ExPASy Swiss-Prot
Match: CSN2_DICDI (COP9 signalosome complex subunit 2 OS=Dictyostelium discoideum GN=csn2 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.710e-14
Identity = 49/177 (27.68%), Postives = 91/177 (51.41%), Query Frame = 1
Query:   43 PAQQGTIDLQSGILHAEEKDYKTAYSYXXXXXXXXNALEDPRAVFSLKYMLL-CKIMVSQADDVAGIISSKAGLQYVGPELDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQ 570
            P   G I    G +H  EK+++ A++         +   + R +  LKY++L C +M+S  +      S++A      P++ AM  +  A+ K  +  FE  L+D +  + +DP +  ++  L   +  Q L +L++PY+R+ I+ I++ + +P   VE  L  +ILD K  G++DQ
Sbjct:  235 PRIMGIIRECGGKMHMAEKEWEKAHTDFFEAFKNYDEAGNSRRIQCLKYLVLACMLMLSTINPFD---STEAKPYKNDPDILAMTNLVMAYEKNDIYAFEKILKDNRKTIMDDPFIRMYIEDLLRNIRTQVLLKLLKPYTRIRISFISKELNIPSSDVESLLVSLILDNKIRGSIDQ 408          
BLAST of CX069593 vs. ExPASy Swiss-Prot
Match: CSN2_XENLA (COP9 signalosome complex subunit 2 (Fragment) OS=Xenopus laevis GN=csn2 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.500e-13
Identity = 50/195 (25.64%), Postives = 87/195 (44.62%), Query Frame = 1
Query:   43 PAQQGTIDLQSGILHAEEKDYKTAYSYXXXXXXXXNALEDPRAVFSLKYMLLCKIMVSQADDVAGIISSKAGLQYVGPELDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFEDPKADAIYPA 627
            P   G I    G +H  E +++ A++         +    PR    LKY++L  +++     +    S +A      PE+ AM  +  A+    +  FE  L+   + + +DP +  H+  L   +  Q L +LI+PY+R+ I  I++ + + +  VE  L Q ILD    G +DQ    L +    +  A Y A
Sbjct:  229 PLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSG--INPFDSQEAKPYKNDPEILAMTNLVSAYQNNDITEFEKILKTNHSNIMDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILDNTIHGRIDQVNQLLELDHQKRGGARYTA 421          
BLAST of CX069593 vs. ExPASy Swiss-Prot
Match: CSN2_RAT (COP9 signalosome complex subunit 2 OS=Rattus norvegicus GN=Cops2 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.500e-13
Identity = 50/195 (25.64%), Postives = 87/195 (44.62%), Query Frame = 1
Query:   43 PAQQGTIDLQSGILHAEEKDYKTAYSYXXXXXXXXNALEDPRAVFSLKYMLLCKIMVSQADDVAGIISSKAGLQYVGPELDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFEDPKADAIYPA 627
            P   G I    G +H  E +++ A++         +    PR    LKY++L  +++     +    S +A      PE+ AM  +  A+    +  FE  L+   + + +DP +  H+  L   +  Q L +LI+PY+R+ I  I++ + + +  VE  L Q ILD    G +DQ    L +    +  A Y A
Sbjct:  231 PLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSG--INPFDSQEAKPYKNDPEILAMTNLVSAYQNNDITEFEKILKTNHSNIMDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILDNTIHGRIDQVNQLLELDHQKRGGARYTA 423          
The following BLAST results are available for this feature:
BLAST of CX069593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
PSD11_MOUSE1.090e-6957.3326S proteasome non-ATPase regulatory subunit 11 OS... [more]
PSD11_HUMAN1.424e-6957.3326S proteasome non-ATPase regulatory subunit 11 OS... [more]
PSD11_BOVIN1.424e-6957.3326S proteasome non-ATPase regulatory subunit 11 OS... [more]
PSD11_DICDI7.067e-6954.7426S proteasome non-ATPase regulatory subunit 11 OS... [more]
RPN6_SCHPO1.474e-6654.51Probable 26S proteasome regulatory subunit rpn6 OS... [more]
RPN6_YEAST1.868e-5349.1526S proteasome regulatory subunit RPN6 OS=Saccharo... [more]
YMJ5_CAEEL1.536e-3938.63Uncharacterized protein F59B2.5 OS=Caenorhabditis ... [more]
CSN2_DICDI1.710e-1427.68COP9 signalosome complex subunit 2 OS=Dictyosteliu... [more]
CSN2_XENLA5.500e-1325.64COP9 signalosome complex subunit 2 (Fragment) OS=X... [more]
CSN2_RAT5.500e-1325.64COP9 signalosome complex subunit 2 OS=Rattus norve... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_11E09_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11E09-J17-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069593 ID=CX069593; Name=CX069593; organism=Citrus sinensis; type=EST; length=844bp
CTCACAGCAGCGAGGACAGCTGCAAATGCTATATATGTGCCACCGGCTCA
ACAAGGCACTATAGATTTGCAGAGCGGAATTTTACATGCTGAAGAGAAGG
ATTACAAAACTGCTTATAGCTATTTCTTTGAAGCATTTGAGGCTTTCAAT
GCTCTTGAAGATCCCAGGGCTGTTTTTAGTCTAAAATACATGTTGCTTTG
CAAGATCATGGTGAGCCAAGCTGATGATGTTGCTGGGATAATTTCTTCTA
AGGCTGGCCTGCAGTATGTTGGGCCAGAATTAGATGCTATGAAAGCTGTT
GCTGATGCTCATTCCAAGAGGTCCTTGAAGTTGTTTGAGACTGCTCTACG
TGATTTCAAGGCTCAGCTTGAGGAAGACCCAATTGTGCATAGGCACCTCT
CATCTCTTTATGACACACTTCTGGAACAAAACCTGTGCAGGTTGATTGAG
CCTTACTCAAGGGTAGAGATAGCACACATTGCAGAGCTCATTGAGCTGCC
GATAGATCATGTAGAGAAAAAGTTATCCCAAATGATTTTGGACAAGAAAT
TTGCTGGGACATTAGATCAGGGCGTTGGATGCCTCATCATATTTGAAGAT
CCTAAGGCAGATGCCATCTATCCTGCCACTTTAGAAACCATTTCCAACAT
GGGCAAGGTTGTGGACAGCCTTTTTGTGAGGTCTGCCAAGATTATGGCAT
GAGGGTTTCTTTTGTGTTTTTTGGTGGGCACTCCTTAGTTCATGGTTCTG
CTTCCTGTCTTTCTATTGTTTCTGAATTATTGCAGACTTGATAATGGATA
TGTTAGTAGGAAACTTGATTTTACATTCACTGTAACTGCATTAA
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