CX069588

Overview
NameCX069588
Unique NameCX069588
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length849
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX069588 vs. ExPASy Swiss-Prot
Match: AGL62_ARATH (Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana GN=AGL62 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.103e-12
Identity = 39/82 (47.56%), Postives = 57/82 (69.51%), Query Frame = 3 
Query:  318 EIEMMKIENEDNRIITVSKRRSRIYKKASELVTLTNAKIGVVV-PPSGKPYSFGHPSIEVVANRIQGLNQ-PPNDNNHPLLR 557
            +IEM+K++NE N  +T SKRRS ++KKASEL TL  A++ +VV  P  K +SFGHP+++ V +R    N  PP+ +N+  LR
Sbjct:   10 KIEMVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVFSFGHPNVDSVIDRFINNNPLPPHQHNNMQLR 91
[Close]
BLAST of CX069588 vs. ExPASy Swiss-Prot
Match: AGL61_ARATH (Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana GN=AGL61 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.746e-12
Identity = 36/73 (49.32%), Postives = 53/73 (72.60%), Query Frame = 3 
Query:  306 VEKLEIEMMKIENEDNRIITVSKRRSRIYKKASELVTLTNAKIGVVV-PPSGKPYSFGHPSIEVVANRIQGLN 521
            + + +I M+KI+ E +R +T SKRR+ ++KKASEL TL  A+IG++V  P+ KP+SFGHPS+E V +R    N
Sbjct:   62 IGRQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKPFSFGHPSVESVLDRYVSRN 134
The following BLAST results are available for this feature:
BLAST of CX069588 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
AGL62_ARATH2.103e-1247.56Agamous-like MADS-box protein AGL62 OS=Arabidopsis... [more]
AGL61_ARATH2.746e-1249.32Agamous-like MADS-box protein AGL61 OS=Arabidopsis... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_11E07_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11E07-J13-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069588 ID=CX069588; Name=CX069588; organism=Citrus sinensis; type=EST; length=849bp
CTTGATTATTTTTCTACAAGTACTTTTGCATGCTTTTAATGATTTATTTC
TCAGCTGGTGGTAAGCCTAAAAAAAAGTGGATGAGTATTGTCATTTTGTG
GCTGCTTCAACCTAGGAAACTATTTGCAACAGCTTCAATTGTGGGGTGAC
GAACTGAGAAAGGCTTCCTATTGAGATTGCCACGATACAATCTCAGCGCC
AGTGAGATTAACAAGCTCACTTGCTTTTTTGCAGAATTCGGATCTATGTT
TGGCAAATGTTTATCATCCTGTCAACCTATTTTCAATCCTCCTCATCTCC
GAATCGTTGAGAAGCTGGAGATTGAGATGATGAAGATTGAAAATGAGGAT
AATAGAATTATCACAGTCTCTAAACGTAGATCCAGGATTTACAAGAAGGC
CAGTGAGCTTGTCACTCTAACTAACGCTAAGATTGGCGTTGTCGTGCCCC
CATCTGGCAAGCCTTACTCGTTTGGTCATCCCTCCATTGAAGTTGTTGCA
AACCGCATCCAAGGATTGAACCAACCACCAAATGACAACAATCACCCCTT
GTTGAGGCTCAACACCAATTACCCTCTTTTTTTTTTTTTGAAGAGAACTA
TTGCTCATGATATTTACACCATACAAATTACTGAGACTTGTTTACATCAA
TTCTGATATGGCACCGCTTAGATTTTTAACCCTCTCAAATATTCGAGGGA
CGCCCAACTCCCATTTTGGGAGAAAGACTACCTTCACTCAAGCTCTGGGA
CTCCAAGGAAGGACATTTAAATTAAACACCCGCAATGCGTCTGCGGGGGC
TCAAACCACTTCCCTCACAATTGTGAGGGAGTGGCTCTAGCCACTTGGG
back to top