CX069578

Overview
NameCX069578
Unique NameCX069578
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length571
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX069578_ssr371 microsatellite CX069578_ssr371:371..382. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4297 contig Csv1_Contig4297:1..571. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX069578 vs. ExPASy Swiss-Prot
Match: UTP11_ORYSJ (Probable U3 small nucleolar RNA-associated protein 11 OS=Oryza sativa subsp. japonica GN=Os01g0810000 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 2.700e-13
Identity = 39/72 (54.17%), Postives = 47/72 (65.28%), Query Frame = 3 
Query:    9 DDIPDHIKRKTAASYRELEGRKKRVQELEKLYMDMSLHXXXXXXXXXXXXXXXXIVCPTSKAVYKWRSERKR 224
            D+IP  IKRKTA+SYRELE RK+RVQ+LEKLY DM+L                 I   TS+ VYKWR++RKR
Sbjct:  158 DNIPSRIKRKTASSYRELEERKQRVQKLEKLYADMALQKELKKPGRKRKLREDEIENQTSRPVYKWRAQRKR 229
[Close]
BLAST of CX069578 vs. ExPASy Swiss-Prot
Match: UTP11_ARATH (Probable U3 small nucleolar RNA-associated protein 11 OS=Arabidopsis thaliana GN=At3g60360 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.301e-11
Identity = 33/71 (46.48%), Postives = 43/71 (60.56%), Query Frame = 3 
Query:   12 DIPDHIKRKTAASYRELEGRKKRVQELEKLYMDMSLHXXXXXXXXXXXXXXXXIVCPTSKAVYKWRSERKR 224
            +IP  IK+K   SYR+LEGRK R ++LEKLY DMS+                 ++ P  KAVYKWR++RKR
Sbjct:  158 EIPKDIKKKMDRSYRDLEGRKSRAKDLEKLYTDMSMQKELQKKGRKRKLRDDELLNPNGKAVYKWRADRKR 228
The following BLAST results are available for this feature:
BLAST of CX069578 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
UTP11_ORYSJ2.700e-1354.17Probable U3 small nucleolar RNA-associated protein... [more]
UTP11_ARATH3.301e-1146.48Probable U3 small nucleolar RNA-associated protein... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_11E02_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11E02-J3-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069578 ID=CX069578; Name=CX069578; organism=Citrus sinensis; type=EST; length=571bp
CTGATTTTGACGACATTCCTGATCACATTAAGAGGAAGACTGCAGCTTCC
TACAGAGAACTAGAAGGGAGGAAAAAGAGAGTACAGGAGTTGGAAAAACT
GTATATGGATATGTCATTGCATAAGGAATTACAGAAAAAGGGCCGGAAAC
GCAAACTACGTGAAGAGGAGATTGTTTGCCCAACCTCCAAGGCTGTATAT
AAGTGGCGGTCTGAGCGGAAGCGGTAAAGAGGGTACATTTTGAGGGAATT
TTGTCAAATTAGCCCCGTCCACTTGTTTTGTTATGAGAGGGATTTGTTCT
GTAGACTGGTAGCCATGTGCTGGAGGCTGAATTAGGACCAAGCAGTTTGC
ATGAGGATTCGAGCTGATGAATGATGATGATGGGTGTGGAAACTGGAAGG
GAGTACTGAATAATTTCAAAAATGTAATTCTAATAATTTCCGAGCGTAGA
CTGACAAAATAATGAAATTTTTGAGTGATGTGTCGGTTGTAGTTTTTGTC
GTATCGTTTGACTTCAATGAATTTTATCTTGAAATTAATACAGGATTTTT
TCGTTAAAAAAAAAAAAAAAA
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