CX069519

Overview
NameCX069519
Unique NameCX069519
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length778
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069519 vs. ExPASy Swiss-Prot
Match: YH75_SCHPO (Vesicle-associated membrane protein-associated protein C16G5.05c OS=Schizosaccharomyces pombe GN=SPBC16G5.05c PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.826e-13
Identity = 69/253 (27.27%), Postives = 118/253 (46.64%), Query Frame = 1
Query:   40 VIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQHVAP-PDLQCKDKFLIQGIVV-PFGTSDEDITSDMFA--KDSGKYVEEKKLRVILMSPPQSPVLLPRNGELKQDSSPETSLQKDRALSGVENIPPGDGVAANAEVFETAKFADELTETKDLQWLENAKERDESRAAKDVQMFGTTNVTNKLREAKDVQTFESSKD-----IDELISAAEDEQSRPAEDASELKPAKDILELKLAK 771
            +I + N + + V FKVKTT+PK YCVRPN   I+PK+  +  V +QA    P PD +C+DKFLIQ + +    TS+ +   + +   +  G+ + ++K+R +  S  Q P    +  E    S+P  S++    L+     P   GV+ +    +     D L+         N    D +        F +T  + ++ +A  VQT  +  D     + + I  AE   S+ A+ A      +DI++ ++ K
Sbjct:   22 LISVHNPNPEPVIFKVKTTAPKHYCVRPNSGKIEPKSTVNVQVLLQAMKEEPAPDFKCRDKFLIQSMAIGDADTSNVENYHEFWTEMEKQGRSIFDRKIRCV-YSTKQPPQSADKQVENTSTSNPPVSVEGSENLASSVGGPTAVGVSLDEAQNDFNGAKDHLSNG------VNTVVPDST--------FRSTFESAQIPDASVVQTVVTDADNGAASVKDTIVTAESASSKGADVAR--SKVQDIIDNEIPK 257          
BLAST of CX069519 vs. ExPASy Swiss-Prot
Match: SCS2_YEAST (Vesicle-associated membrane protein-associated protein SCS2 OS=Saccharomyces cerevisiae GN=SCS2 PE=1 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 8.222e-13
Identity = 47/153 (30.72%), Postives = 76/153 (49.67%), Query Frame = 1
Query:    1 LKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKP-KAISDFTVTMQAQHVAPPDLQCKDKFLIQGIVVPF---GTSDEDITSDMFAKDSGKYVEEKKLRVILMSPPQSPVLLPRNGELKQDSSPETSLQKDRALSGVEN 447
            L +   + +QST    + N SDQ +AFKVKTT+PK YCVRPN +++ P + I    + +        D +C+DKFL+  +  P+   G +  D+ SD+ A+   + + +K     L+SP   P       E K+   P     + + +  V N
Sbjct:   11 LVYKSPLTEQSTEYASISNNSDQTIAFKVKTTAPKFYCVRPNAAVVAPGETIQVQVIFLGLTEEPAADFKCRDKFLVITLPSPYDLNGKAVADVWSDLEAEFKQQAISKKIKVKYLISPDVHPAQNQNIQENKETVEPVVQDSEPKEVPAVVN 163          
The following BLAST results are available for this feature:
BLAST of CX069519 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
YH75_SCHPO2.826e-1327.27Vesicle-associated membrane protein-associated pro... [more]
SCS2_YEAST8.222e-1330.72Vesicle-associated membrane protein-associated pro... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_11A03_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11A03-B5-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069519 ID=CX069519; Name=CX069519; organism=Citrus sinensis; type=EST; length=778bp
CTCAAGTTTACATTTGAGGTGAAGAAACAAAGTACATGTGTAATTCAACT
TGGCAACAAATCTGATCAGTGTGTTGCTTTCAAGGTAAAAACTACATCTC
CAAAGAAATATTGTGTAAGACCCAATGTAAGTATTATCAAGCCAAAAGCA
ATATCTGATTTTACAGTTACTATGCAAGCTCAGCATGTAGCTCCACCAGA
TTTGCAGTGCAAAGATAAGTTTCTGATTCAAGGCATAGTGGTTCCATTCG
GGACTTCTGACGAGGACATTACTTCCGATATGTTTGCAAAAGATTCCGGT
AAGTATGTTGAAGAAAAGAAGCTGCGAGTGATTCTAATGAGCCCACCCCA
GTCCCCAGTTTTGCTGCCAAGAAATGGAGAGTTAAAGCAAGATTCATCCC
CTGAGACATCATTGCAAAAAGATAGAGCACTCAGTGGAGTTGAAAACATA
CCTCCAGGCGATGGGGTAGCTGCAAATGCGGAGGTGTTCGAAACTGCTAA
GTTCGCAGATGAGTTAACAGAAACTAAGGATCTGCAGTGGCTTGAAAATG
CCAAGGAAAGAGATGAGTCAAGAGCGGCTAAGGATGTACAGATGTTCGGA
ACTACTAATGTCACAAATAAGTTAAGAGAAGCCAAGGATGTGCAGACGTT
TGAAAGCTCTAAGGATATAGATGAGCTAATAAGTGCAGCTGAGGATGAAC
AGTCAAGGCCTGCAGAGGATGCGAGCGAATTGAAACCAGCAAAGGATATA
TTGGAATTGAAGTTGGCCAAGGATTTTG
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