CX069517

Overview
NameCX069517
Unique NameCX069517
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length763
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069517 vs. ExPASy Swiss-Prot
Match: VATC_ARATH (V-type proton ATPase subunit C OS=Arabidopsis thaliana GN=VHA-C PE=1 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 8.172e-42
Identity = 81/109 (74.31%), Postives = 89/109 (81.65%), Query Frame = -3
Query:  405 KLVHDQESLRSSLLQWCYTSYGEVFSSWMHFCAVRVFAESILRYGLPPSFLACVLAPSVKGEKKVRSILEELCGNANSTFWKSEXXXXXXXXXXXXXDSHPYVSFTINL 731
            KLV DQESLRSSLLQWCYTSYGEVFSSWMHFCAVR FAESI+RYGLPP+FLACVL+P+VK EKKVRSILE LC + NS +WKSE             ++HPYVSFTINL
Sbjct:  266 KLVQDQESLRSSLLQWCYTSYGEVFSSWMHFCAVRTFAESIMRYGLPPAFLACVLSPAVKSEKKVRSILERLCDSTNSLYWKSEEDAGAMAGLAGDSETHPYVSFTINL 374          
BLAST of CX069517 vs. ExPASy Swiss-Prot
Match: VATC_DICDI (V-type proton ATPase subunit C OS=Dictyostelium discoideum GN=vatC PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.319e-12
Identity = 31/69 (44.93%), Postives = 48/69 (69.57%), Query Frame = -3
Query:  525 KLVHDQESLRSSLLQWCYTSYGEVFSSWMHFCAVRVFAESILRYGLPPSFLACVLAPSVKGEKKVRSIL 731
            KL  D+++ R+SL++WC  ++ E F +W+H   VRVF ES+LR+G+P +F A ++ P    +KKVR IL
Sbjct:  264 KLTEDKKNCRTSLIRWCRLNFPEAFMAWVHLKVVRVFVESVLRFGIPFNFQAILMKPQKGADKKVRDIL 332          
BLAST of CX069517 vs. ExPASy Swiss-Prot
Match: VATC_ASCSS (V-type proton ATPase subunit C 2 OS=Ascidia sydneiensis samea GN=VATC PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.319e-12
Identity = 33/79 (41.77%), Postives = 50/79 (63.29%), Query Frame = -3
Query:  495 KLVHDQESLRSSLLQWCYTSYGEVFSSWMHFCAVRVFAESILRYGLPPSFLACVLAPSVKGEKKVRSILEELCGNANST 731
            K+  ++  +   LL+W   ++ EVF++W+H  A+RVF ES+LRYGLP +F A VL P  K  K++R +L  L    +ST
Sbjct:  268 KIASEKRKMLGPLLRWLKVNFSEVFTAWIHIKALRVFVESVLRYGLPVNFQAVVLDPPKKNRKRLRDVLNNLYCKLDST 346          
BLAST of CX069517 vs. ExPASy Swiss-Prot
Match: VTC1B_DANRE (V-type proton ATPase subunit C 1-B OS=Danio rerio GN=atp6v1c1b PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.812e-12
Identity = 36/115 (31.30%), Postives = 65/115 (56.52%), Query Frame = -3
Query:  405 EEEGWEKLVHDQESLRSSLLQWCYTSYGEVFSSWMHFCAVRVFAESILRYGLPPSFLACVLAPSVKGEKKVRSILEELCGNANSTFWKSEXXXXXXXXXXXXXDSHPYVSFTINL 749
            ++E   +L  D++     L++W   ++ E F +W+H  A+RVF ES+LRYGLP +F A +L P+ K  KK+R +L++L  + +S+    +             + +PYV + I++
Sbjct:  261 DKEEMTRLSTDKKKQFGPLVRWLKVNFSETFIAWIHIKALRVFTESVLRYGLPVNFQAMLLQPNKKNVKKLREVLKDLYKHLDSSAAVIDGSVDIPGLNLSQQEYYPYVYYKIDV 375          
BLAST of CX069517 vs. ExPASy Swiss-Prot
Match: VATC1_RAT (V-type proton ATPase subunit C 1 OS=Rattus norvegicus GN=Atp6v1c1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.812e-12
Identity = 33/85 (38.82%), Postives = 54/85 (63.53%), Query Frame = -3
Query:  495 EEEGWEKLVHDQESLRSSLLQWCYTSYGEVFSSWMHFCAVRVFAESILRYGLPPSFLACVLAPSVKGEKKVRSILEELCGNANST 749
            ++E   +L  D++     L++W   ++ E F +W+H  A+RVF ES+LRYGLP +F A +L P+ K  KK+R +L EL  + +S+
Sbjct:  261 DKEEMNRLSTDKKKQFGPLVRWLKVNFSEAFIAWIHIKALRVFVESVLRYGLPVNFQAMLLQPNKKSVKKLREVLHELYKHLDSS 345          
BLAST of CX069517 vs. ExPASy Swiss-Prot
Match: VATC1_MOUSE (V-type proton ATPase subunit C 1 OS=Mus musculus GN=Atp6v1c1 PE=1 SV=4)

HSP 1 Score: 70.4774 bits (171), Expect = 1.151e-11
Identity = 33/85 (38.82%), Postives = 54/85 (63.53%), Query Frame = -3
Query:  495 EEEGWEKLVHDQESLRSSLLQWCYTSYGEVFSSWMHFCAVRVFAESILRYGLPPSFLACVLAPSVKGEKKVRSILEELCGNANST 749
            ++E   +L  D++     L++W   ++ E F +W+H  A+RVF ES+LRYGLP +F A +L P+ K  KK+R +L EL  + +S+
Sbjct:  261 DKEEMTRLSTDKKKQFGPLVRWLKVNFSEAFIAWIHIKALRVFVESVLRYGLPVNFQAMLLQPNKKSVKKLREVLHELYKHLDSS 345          
BLAST of CX069517 vs. ExPASy Swiss-Prot
Match: VATC1_PONAB (V-type proton ATPase subunit C 1 OS=Pongo abelii GN=ATP6V1C1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.564e-11
Identity = 33/85 (38.82%), Postives = 54/85 (63.53%), Query Frame = -3
Query:  495 EEEGWEKLVHDQESLRSSLLQWCYTSYGEVFSSWMHFCAVRVFAESILRYGLPPSFLACVLAPSVKGEKKVRSILEELCGNANST 749
            ++E   +L  D++     L++W   ++ E F +W+H  A+RVF ES+LRYGLP +F A +L P+ K  KK+R +L EL  + +S+
Sbjct:  261 DKEEMNRLSTDKKKQFGPLVRWLKVNFSEAFIAWIHVKALRVFVESVLRYGLPVNFQAMLLQPNKKTLKKLREVLHELYKHLDSS 345          
BLAST of CX069517 vs. ExPASy Swiss-Prot
Match: VATC1_MACFA (V-type proton ATPase subunit C 1 OS=Macaca fascicularis GN=ATP6V1C1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.564e-11
Identity = 33/85 (38.82%), Postives = 54/85 (63.53%), Query Frame = -3
Query:  495 EEEGWEKLVHDQESLRSSLLQWCYTSYGEVFSSWMHFCAVRVFAESILRYGLPPSFLACVLAPSVKGEKKVRSILEELCGNANST 749
            ++E   +L  D++     L++W   ++ E F +W+H  A+RVF ES+LRYGLP +F A +L P+ K  KK+R +L EL  + +S+
Sbjct:  261 DKEEMNRLSTDKKKQFGPLVRWLKVNFSEAFIAWIHVKALRVFVESVLRYGLPVNFQAMLLQPNKKTLKKLREVLHELYKHLDSS 345          
BLAST of CX069517 vs. ExPASy Swiss-Prot
Match: VATC1_HUMAN (V-type proton ATPase subunit C 1 OS=Homo sapiens GN=ATP6V1C1 PE=1 SV=4)

HSP 1 Score: 69.3218 bits (168), Expect = 2.564e-11
Identity = 33/85 (38.82%), Postives = 54/85 (63.53%), Query Frame = -3
Query:  495 EEEGWEKLVHDQESLRSSLLQWCYTSYGEVFSSWMHFCAVRVFAESILRYGLPPSFLACVLAPSVKGEKKVRSILEELCGNANST 749
            ++E   +L  D++     L++W   ++ E F +W+H  A+RVF ES+LRYGLP +F A +L P+ K  KK+R +L EL  + +S+
Sbjct:  261 DKEEMNRLSTDKKKQFGPLVRWLKVNFSEAFIAWIHVKALRVFVESVLRYGLPVNFQAMLLQPNKKTLKKLREVLHELYKHLDSS 345          
BLAST of CX069517 vs. ExPASy Swiss-Prot
Match: VATC1_BOVIN (V-type proton ATPase subunit C 1 OS=Bos taurus GN=ATP6V1C1 PE=1 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 3.349e-11
Identity = 33/85 (38.82%), Postives = 54/85 (63.53%), Query Frame = -3
Query:  495 EEEGWEKLVHDQESLRSSLLQWCYTSYGEVFSSWMHFCAVRVFAESILRYGLPPSFLACVLAPSVKGEKKVRSILEELCGNANST 749
            ++E   +L  D++     L++W   ++ E F +W+H  A+RVF ES+LRYGLP +F A +L P+ K  KK+R +L EL  + +S+
Sbjct:  261 DKEEMNRLSTDKKKQFGPLVRWLKVNFSEAFIAWIHVKALRVFVESVLRYGLPVNFQAMLLQPNKKTMKKLREVLYELYKHLDSS 345          
The following BLAST results are available for this feature:
BLAST of CX069517 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
VATC_ARATH8.172e-4274.31V-type proton ATPase subunit C OS=Arabidopsis thal... [more]
VATC_DICDI2.319e-1244.93V-type proton ATPase subunit C OS=Dictyostelium di... [more]
VATC_ASCSS2.319e-1241.77V-type proton ATPase subunit C 2 OS=Ascidia sydnei... [more]
VTC1B_DANRE8.812e-1231.30V-type proton ATPase subunit C 1-B OS=Danio rerio ... [more]
VATC1_RAT8.812e-1238.82V-type proton ATPase subunit C 1 OS=Rattus norvegi... [more]
VATC1_MOUSE1.151e-1138.82V-type proton ATPase subunit C 1 OS=Mus musculus G... [more]
VATC1_PONAB2.564e-1138.82V-type proton ATPase subunit C 1 OS=Pongo abelii G... [more]
VATC1_MACFA2.564e-1138.82V-type proton ATPase subunit C 1 OS=Macaca fascicu... [more]
VATC1_HUMAN2.564e-1138.82V-type proton ATPase subunit C 1 OS=Homo sapiens G... [more]
VATC1_BOVIN3.349e-1138.82V-type proton ATPase subunit C 1 OS=Bos taurus GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_11A02_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11A02-B3-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069517 ID=CX069517; Name=CX069517; organism=Citrus sinensis; type=EST; length=763bp
ATTTAATCTCATTCCTTAATTTCCATTCCCATTCCCAATAAGTAAATACA
CTATAATAACAAACATCACAAAACTGCATCAATACTTGTTGATCATTGTA
GGACAACAAATTTAATGTTCAAGAAGAGCATGAAAATTGAAACATAATAG
ATACAGAAAATAAAACCTCATAAATAATAACTTAAAATACAAATTTCAGA
TGGCAAGATCTTCTCCACAAGCTTCCTCCATGAGACTGACCAGAACTATC
CAAGCTGAGATCATAAGTAAACAACAAAAGAATTGAGTTATTGATCCTAA
TATACATATCTTCAACTCCAGCCCATTATTTATTTTAGTCCAGAGGAATA
CTTGAGACTGAATTCTACCGGACATGGAACCGGGGGACTCAGCATCAATC
AAACAAGATTGATTGTGAACGACACATAAGGATGAGAATCAGCATCCCCT
CCCAAACCCGCCATCATTCCGCCATCATCTTCGGATTTCCAGAATGTGCT
GTTCGCATTGCCGCACAGTTCTTCAAGAATTGAACGCACTTTTTTTTCAC
CCTTCACGGAGGGAGCTAAAACACATGCCAAGAAAGATGGCGGCAAACCA
TATCTCAAAATGCTCTCTGCAAAGACACGTACAGCACAAAAATGCATCCA
GGAACTAAAAACCTCGCCGTAACTGGTATAGCACCATTGCAAAAGAGAGC
TTCTCAAGCTTTCTTGGTCGTGAACTAATTTTTCCCAGCCTTCTTCTTCT
CACGTCTTTTTCT
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