DR403865

Overview
NameDR403865
Unique NameDR403865
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length728
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DR403865_ssr648 microsatellite DR403865_ssr648:648..667. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of DR403865 vs. ExPASy Swiss-Prot
Match: KTNB1_ARATH (Katanin p80 WD40 repeat-containing subunit B1 homolog 1 OS=Arabidopsis thaliana GN=At5g23430 PE=2 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 1.931e-13
Identity = 38/68 (55.88%), Postives = 51/68 (75.00%), Query Frame = 1 
Query:    4 VVVFGPMIHSTLSAPPAVGVDLHAEQRRECCNRCFMQLQKIQKILPILERRGGLLAKCAHELNLVLQE 207
            V ++G  I+S+LSAP +VGVD+ AEQR E  +RCF++L+K++  LP L RRGGL+AK   ELNL  QE
Sbjct:  767 VRLYGSPIYSSLSAPASVGVDIEAEQRIERYSRCFVELEKVKACLPSLARRGGLVAKSVLELNLAFQE 834
The following BLAST results are available for this feature:
BLAST of DR403865 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
KTNB1_ARATH1.931e-1355.88Katanin p80 WD40 repeat-containing subunit B1 homo... [more]
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Properties
Property NameValue
Genbank descriptionCSAH-PNP1246I07 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone CSAH-PNP1246I07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403865 ID=DR403865; Name=DR403865; organism=Citrus sinensis; type=EST; length=728bp
GGGGTTGTAGTCTTTGGCCCAATGATACACTCAACTCTTTCAGCACCTCC
AGCTGTTGGTGTTGATCTTCATGCGGAGCAAAGGCGAGAATGTTGCAACC
GGTGCTTTATGCAGCTGCAAAAGATCCAGAAAATTCTTCCCATCCTTGAA
AGGAGGGGTGGCTTGCTGGCCAAATGTGCCCATGAATTGAATTTAGTTCT
TCAAGAATCATAAGCAGCACTTTAACCTTGATCCCAGTTCAGTTTTTTGC
TGAAACTTCAGCGTGGAGTTGCGGATACTCTTAACAGGATATTATTTGAT
ACAGCATTTGCACATCGGAATTCTGGGTAATCACAATTTTGTCTTGCTGC
TTCTTAAATTCTGAAGTCATCCATGGCTTTCATCTGCGTGGAAGCCACAG
GTTGAGACTCTCGAGAACAGAGCTCGGGGCAGTACCTTCGGTTTGTAACA
TTTTTGCCTGAAGGTGGGAAAAGCATTAATCGAATGTTGATCTTCGGGTA
CCATTCAGGAATTTCCAGTCGTGATTCTTTCATTCCAGGTAACGGTTGCA
CTTCCCATTAAAATGAATGTGTAAGTATGTGCCAATATGCCAAAATATAC
ATGTATGTATACTGCATTAGTAGTCATCAATGGATTACCTATACGTGTAT
ATATATATATATATATACACACTCTTGGAACTGCCCTCCATTTTTCCTTC
TGTCTTTGCTGCTGCTTGAGTGGTGCAT
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