DR403859

Overview
NameDR403859
Unique NameDR403859
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length715
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig284 contig Csv1_Contig284:54..768. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DR403859 vs. ExPASy Swiss-Prot
Match: MPK20_ARATH (Mitogen-activated protein kinase 20 OS=Arabidopsis thaliana GN=MPK20 PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 2.523e-18
Identity = 56/130 (43.08%), Postives = 76/130 (58.46%), Query Frame = 2 
Query:    5 AYDPRTFIRSTVLPQAIPAAYCYRKSSTGKQEMDSEREMPSQVKHVPQCGMAAKFATDIAINMDSNPFFMTRAGVNKVEHIEDQISIDTNLLQAKSQYGGVGXXXXXXXXXXXXHRKIGTVQYGMTTRMY 394
            AYDPR+FIRST LP +  +A         +QE  +  E   Q + + Q     ++A D+AIN+D+NPF M R G+NK E+I D+I IDTNLLQA +   GV             HRK+G V+YGM ++MY
Sbjct:  484 AYDPRSFIRSTNLPFSQQSAATVAMGK--QQERRTTMEPEKQARQISQYN---RYAPDVAINIDNNPFIMARTGMNKAENISDRIIIDTNLLQATAGI-GVAAAAAAAAPGGSAHRKVGAVRYGM-SKMY 606
The following BLAST results are available for this feature:
BLAST of DR403859 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
MPK20_ARATH2.523e-1843.08Mitogen-activated protein kinase 20 OS=Arabidopsis... [more]
back to top
Properties
Property NameValue
Genbank descriptionCSAH-PNP1246H23 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone CSAH-PNP1246H23 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403859 ID=DR403859; Name=DR403859; organism=Citrus sinensis; type=EST; length=715bp
GGGTGCTTATGATCCAAGAACATTTATCAGAAGCACAGTGCTCCCTCAGG
CAATCCCTGCTGCTTATTGCTACCGCAAATCTAGTACAGGAAAGCAAGAA
ATGGATTCTGAGAGGGAAATGCCTTCACAGGTGAAACATGTTCCTCAATG
TGGCATGGCGGCCAAATTTGCAACAGACATAGCTATCAACATGGACTCCA
ATCCCTTTTTTATGACACGCGCAGGGGTGAACAAGGTGGAACACATAGAA
GACCAAATCTCCATTGACACAAATTTGTTGCAGGCAAAATCTCAGTATGG
TGGGGTTGGTGCTGCTGCCACTGCTGCTGCAGCAACAGCTGCCGCTCACA
GAAAGATTGGAACGGTTCAGTATGGTATGACAACGAGGATGTATTAGCCA
AAGGACTAGAGGCAGTTTCAGTAAAGTTTGAGTAATCGACAGTGAAGGGT
TCTTTGAAGGCATTGGGACAAAACTAGAAAATGCGGATTGAGCAGTAGGA
TGTGTAAAATATGCGAGTTCAGGTTTGTCCACTCCTTCAAAGAGCTAGCG
TTTCTCAGGTTTGTCTTAGGCGCTAGTAAAAGTTTGTTTATAAGAAATGA
TATGTTAGTGAAATTATACAATTCCATCCTTAAAGAAAAATAATTCTCTC
TTGCCTCTCTTGAAACACATTTCAAATGGGAAGTTCATGTGGATTCATTT
TAATGATAAAATGAA
back to top