DR403857

Overview
NameDR403857
Unique NameDR403857
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length638
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6152 contig Csv1_Contig6152:366..1002. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403857 vs. ExPASy Swiss-Prot
Match: VPS29_DANRE (Vacuolar protein sorting-associated protein 29 OS=Danio rerio GN=vps29 PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 7.230e-48
Identity = 84/140 (60.00%), Postives = 115/140 (82.14%), Query Frame = 3
Query:    9 EEVHDYLKSLCPDLHVTRGEYDEDSRYPETKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSATGAYSSFTFDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDFKKT 428
            +E +DYLK+L  D+H+ RG++DE+  YPE K +T+GQFK+G+ HGHQVIPWGD+ SLA+LQRQLDVDIL++GHTH+F+A+++E    INPGSATGAYS+   ++ PSFVLMDI    VV YVY+LI  +VKV++I++KK+
Sbjct:   43 KESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQLDVDILISGHTHKFEAFENENKFYINPGSATGAYSALESNITPSFVLMDIQASTVVTYVYQLIGDDVKVERIEYKKS 182          
BLAST of DR403857 vs. ExPASy Swiss-Prot
Match: VPS29_PONAB (Vacuolar protein sorting-associated protein 29 OS=Pongo abelii GN=VPS29 PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.611e-47
Identity = 83/140 (59.29%), Postives = 114/140 (81.43%), Query Frame = 3
Query:    9 EEVHDYLKSLCPDLHVTRGEYDEDSRYPETKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSATGAYSSFTFDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDFKKT 428
            +E +DYLK+L  D+H+ RG++DE+  YPE K +T+GQFK+G+ HGHQVIPWGD+ SLA+LQRQ DVDIL++GHTH+F+A++HE    INPGSATGAY++   ++ PSFVLMDI    VV YVY+LI  +VKV++I++KK+
Sbjct:   43 KESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYNALEANIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEYKKS 182          
BLAST of DR403857 vs. ExPASy Swiss-Prot
Match: VPS29_MOUSE (Vacuolar protein sorting-associated protein 29 OS=Mus musculus GN=Vps29 PE=1 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.611e-47
Identity = 83/140 (59.29%), Postives = 114/140 (81.43%), Query Frame = 3
Query:    9 EEVHDYLKSLCPDLHVTRGEYDEDSRYPETKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSATGAYSSFTFDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDFKKT 428
            +E +DYLK+L  D+H+ RG++DE+  YPE K +T+GQFK+G+ HGHQVIPWGD+ SLA+LQRQ DVDIL++GHTH+F+A++HE    INPGSATGAY++   ++ PSFVLMDI    VV YVY+LI  +VKV++I++KK+
Sbjct:   43 KESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEYKKS 182          
BLAST of DR403857 vs. ExPASy Swiss-Prot
Match: VPS29_BOVIN (Vacuolar protein sorting-associated protein 29 OS=Bos taurus GN=VPS29 PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.611e-47
Identity = 83/140 (59.29%), Postives = 114/140 (81.43%), Query Frame = 3
Query:    9 EEVHDYLKSLCPDLHVTRGEYDEDSRYPETKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSATGAYSSFTFDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDFKKT 428
            +E +DYLK+L  D+H+ RG++DE+  YPE K +T+GQFK+G+ HGHQVIPWGD+ SLA+LQRQ DVDIL++GHTH+F+A++HE    INPGSATGAY++   ++ PSFVLMDI    VV YVY+LI  +VKV++I++KK+
Sbjct:   47 KESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEYKKS 186          
BLAST of DR403857 vs. ExPASy Swiss-Prot
Match: VPS29_RAT (Vacuolar protein sorting-associated protein 29 OS=Rattus norvegicus GN=Vps29 PE=1 SV=2)

HSP 1 Score: 188.734 bits (478), Expect = 2.104e-47
Identity = 83/140 (59.29%), Postives = 113/140 (80.71%), Query Frame = 3
Query:    9 EEVHDYLKSLCPDLHVTRGEYDEDSRYPETKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSATGAYSSFTFDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDFKKT 428
            +E +DYLK+L  D+H+ RG++DE   YPE K +T+GQFK+G+ HGHQVIPWGD+ SLA+LQRQ DVDIL++GHTH+F+A++HE    INPGSATGAY++   ++ PSFVLMDI    VV YVY+LI  +VKV++I++KK+
Sbjct:   43 KESYDYLKTLAGDVHIVRGDFDESLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEYKKS 182          
BLAST of DR403857 vs. ExPASy Swiss-Prot
Match: VPS29_HUMAN (Vacuolar protein sorting-associated protein 29 OS=Homo sapiens GN=VPS29 PE=1 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.104e-47
Identity = 83/139 (59.71%), Postives = 113/139 (81.29%), Query Frame = 3
Query:    9 EEVHDYLKSLCPDLHVTRGEYDEDSRYPETKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSATGAYSSFTFDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDFKK 425
            +E +DYLK+L  D+H+ RG++DE+  YPE K +T+GQFK+G+ HGHQVIPWGD+ SLA+LQRQ DVDIL++GHTH+F+A++HE    INPGSATGAY++   ++ PSFVLMDI    VV YVY+LI  +VKV++I++KK
Sbjct:   43 KESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEYKK 181          
BLAST of DR403857 vs. ExPASy Swiss-Prot
Match: VPS29_CHICK (Vacuolar protein sorting-associated protein 29 OS=Gallus gallus GN=VPS29 PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 3.588e-47
Identity = 83/140 (59.29%), Postives = 113/140 (80.71%), Query Frame = 3
Query:    9 EEVHDYLKSLCPDLHVTRGEYDEDSRYPETKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSATGAYSSFTFDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDFKKT 428
            ++ +DYLK+L  D+HV RG++DE+  YPE K +T+GQFK+G+ HGHQVIPWGD+ SLA+LQRQ DVDIL++GHTH+F+A++HE    INPGSATGAY +   ++ PSFVLMDI    VV YVY+LI  +VKV++I++KK+
Sbjct:   47 KDTYDYLKTLAGDVHVVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYHALENNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEYKKS 186          
BLAST of DR403857 vs. ExPASy Swiss-Prot
Match: VPS29_DICDI (Vacuolar protein sorting-associated protein 29 OS=Dictyostelium discoideum GN=vps29 PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 7.994e-47
Identity = 80/139 (57.55%), Postives = 110/139 (79.14%), Query Frame = 3
Query:    9 EEVHDYLKSLCPDLHVTRGEYDEDSRYPETKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSATGAYSSFTFDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDFKK 425
            +E+HDY K L  D+H+ RG+ DE++ YP+TK ++IGQFK G+CHGHQ++PWGD  SLA LQRQLDVD+L++GHTH  + ++  G + +NPGSATGA+S+ + DV PSFVLMD+    + VY+Y+LIDG+VKV+KID  K
Sbjct:   43 KEIHDYFKVLTSDVHIVRGDLDENTSYPDTKIVSIGQFKFGLCHGHQIVPWGDRASLAALQRQLDVDVLISGHTHVLEVFESNGKLFVNPGSATGAFSNISNDVIPSFVLMDVQSNNITVYIYKLIDGQVKVEKIDHVK 181          
BLAST of DR403857 vs. ExPASy Swiss-Prot
Match: VPS29_XENTR (Vacuolar protein sorting-associated protein 29 OS=Xenopus tropicalis GN=vps29 PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.364e-46
Identity = 83/140 (59.29%), Postives = 113/140 (80.71%), Query Frame = 3
Query:    9 EEVHDYLKSLCPDLHVTRGEYDEDSRYPETKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSATGAYSSFTFDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDFKKT 428
            +E  DYLK+L  D+H+ RG++DE+  YPE K +T+GQFK+G+ HGHQVIPWGD+ SLA+LQRQLDVDIL++GHT +F+A++HE    INPGSATGAY++   ++ PSFVLMDI    VV YVY+LI  +VKV++I++KK+
Sbjct:   43 KESFDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQLDVDILISGHTQKFEAFEHENKFYINPGSATGAYNALENNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEYKKS 182          
BLAST of DR403857 vs. ExPASy Swiss-Prot
Match: VPS29_XENLA (Vacuolar protein sorting-associated protein 29 OS=Xenopus laevis GN=vps29 PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.364e-46
Identity = 83/140 (59.29%), Postives = 113/140 (80.71%), Query Frame = 3
Query:    9 EEVHDYLKSLCPDLHVTRGEYDEDSRYPETKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSATGAYSSFTFDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDFKKT 428
            +E  DYLK+L  D+H+ RG++DE+  YPE K +T+GQFK+G+ HGHQVIPWGD+ SLA+LQRQLDVDIL++GHT +F+A++HE    INPGSATGAY++   ++ PSFVLMDI    VV YVY+LI  +VKV++I++KK+
Sbjct:   43 KESFDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQLDVDILISGHTQKFEAFEHENKFYINPGSATGAYNALENNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEYKKS 182          
The following BLAST results are available for this feature:
BLAST of DR403857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
VPS29_DANRE7.230e-4860.00Vacuolar protein sorting-associated protein 29 OS=... [more]
VPS29_PONAB1.611e-4759.29Vacuolar protein sorting-associated protein 29 OS=... [more]
VPS29_MOUSE1.611e-4759.29Vacuolar protein sorting-associated protein 29 OS=... [more]
VPS29_BOVIN1.611e-4759.29Vacuolar protein sorting-associated protein 29 OS=... [more]
VPS29_RAT2.104e-4759.29Vacuolar protein sorting-associated protein 29 OS=... [more]
VPS29_HUMAN2.104e-4759.71Vacuolar protein sorting-associated protein 29 OS=... [more]
VPS29_CHICK3.588e-4759.29Vacuolar protein sorting-associated protein 29 OS=... [more]
VPS29_DICDI7.994e-4757.55Vacuolar protein sorting-associated protein 29 OS=... [more]
VPS29_XENTR1.364e-4659.29Vacuolar protein sorting-associated protein 29 OS=... [more]
VPS29_XENLA1.364e-4659.29Vacuolar protein sorting-associated protein 29 OS=... [more]

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Properties
Property NameValue
Genbank descriptionCSAH-PNP1246H21 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone CSAH-PNP1246H21 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403857 ID=DR403857; Name=DR403857; organism=Citrus sinensis; type=EST; length=638bp
GGGCTATCGAAGAAGTCCATGATTATTTGAAGAGTCTTTGTCCTGATTTG
CATGTCACTCGAGGTGAATATGATGAAGATTCACGTTATCCCGAAACTAA
GACACTCACCATTGGGCAATTCAAGCTTGGAATCTGCCATGGTCATCAGG
TTATTCCATGGGGGGACTTGGATTCGCTGGCAATGCTGCAAAGGCAGTTG
GATGTGGACATCCTTGTGACTGGTCATACCCATCAGTTCAAAGCCTACAA
ACATGAAGGTGGTGTTGTTATAAATCCTGGCTCTGCAACTGGTGCCTACA
GTAGCTTTACATTTGATGTAAACCCAAGCTTTGTACTCATGGACATTGAT
GGTCTGCGAGTTGTGGTTTATGTATACGAATTAATTGACGGTGAAGTAAA
GGTTGACAAAATTGATTTTAAGAAGACTGCCACTACTCGATTAGCACACT
GATTCAGCACACTGCATCCTTGACTTTGTTGGACTAATTGCTGAGAACTT
TTATGTAATGCCAATAAGTTGTTCATGTGTAAATTCTCTTTAACAGTTTT
GCTTGGATTCTGGAGATCATGTATTGAAACGAATAAATCGAATATTTACT
NNGGCTCATTCCTAGAAAAAAAAAAAAAAAAAAAAAAA
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