CX054047

Overview
NameCX054047
Unique NameCX054047
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length871
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX054047 vs. ExPASy Swiss-Prot
Match: SRG1_ARATH (Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 8.259e-60
Identity = 117/235 (49.79%), Postives = 156/235 (66.38%), Query Frame = -2
Query:  178 IEGYGQAFVVSKDQKLDWGDMLFLLTQPANIRTTSLWPTIPTSLRATIEEYSLELQKVTIFLLKLMAKNLGIEPGKLASLFED--GIQGIRMNYYPPCAQANRVIGLTPHSDSVAXXXXXXXXXXXXXXVKKYGKWVPVKPIPGAFIINIGDIIEIMSNGEYKSIEHRAVVNPEKERLSVAAFHSPNMNTTIGPLPNSVEDRAI--YKNITHEEFIKLVVTSKLDGKNLLSHVRL 870
            IEG+GQAFVVS+DQKLDW D+ F   QP  +R   L+P +P   R T+E YS E+Q V   L+  MA+ L I+P +L  LF+D   +Q +RMNYYPPC Q ++VIGLTPHSDSV               +KK GKWVPVKP+P AFI+NIGD++EI++NG Y+SIEHR VVN EKERLS+A FH+  M   +GP  + VE + +  +K +T +E+   + +  LDGK  L  +R+
Sbjct:  124 IEGFGQAFVVSEDQKLDWADLFFHTVQPVELRKPHLFPKLPLPFRDTLEMYSSEVQSVAKILIAKMARALEIKPEELEKLFDDVDSVQSMRMNYYPPCPQPDQVIGLTPHSDSVGLTVLMQVNDVEGLQIKKDGKWVPVKPLPNAFIVNIGDVLEIITNGTYRSIEHRGVVNSEKERLSIATFHNVGMYKEVGPAKSLVERQKVARFKRLTMKEYNDGLFSRTLDGKAYLDALRI 358          
BLAST of CX054047 vs. ExPASy Swiss-Prot
Match: NCS1_COPJA (S-norcoclaurine synthase 1 OS=Coptis japonica GN=NCS1 PE=1 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 1.010e-57
Identity = 115/232 (49.57%), Postives = 150/232 (64.66%), Query Frame = -2
Query:  178 IEGYGQAFVVSKDQKLDWGDMLFLLTQPANIRTTSLWPTIPTSLRATIEEYSLELQKVTIFLLKLMAKNLGIEPGKLASLFEDGIQGIRMNYYPPCAQANRVIGLTPHSDSVAXXXXXXXXXXXXXXVKKYGKWVPVKPIPGAFIINIGDIIEIMSNGEYKSIEHRAVVNPEKERLSVAAFHSPNMNTTIGPLPNSVEDRAI-YKNITHEEFIKLVVTSKLDGKNLLSHVRL 870
            +EGYGQAFV S++QKLDW DM FL+T+P   R    WPT PTS R T+E+YS+ELQKV + L  +MAKNLG+E   L       +        P  +     +GL+PHSD+                +KK  KWVP+KPI GAF++NIGD+IEIMSNG YKSIEHRAV+N +KERLS+AAFH P   T IGPLP+ V++  + YK I +E+++      KLDGK+LL  ++L
Sbjct:  122 MEGYGQAFVTSEEQKLDWADMHFLITKPVQERNMRFWPTSPTSFRETMEKYSMELQKVAMCLTGMMAKNLGLESEILTKPLRT-VFNREDELLPSMSSCGEGLGLSPHSDATGLTLLIQVNEVNGLHIKKDEKWVPIKPILGAFVVNIGDVIEIMSNGIYKSIEHRAVINTDKERLSIAAFHDPEYGTKIGPLPDLVKENGVKYKTIDYEDYLIRSSNIKLDGKSLLDQMKL 352          
BLAST of CX054047 vs. ExPASy Swiss-Prot
Match: FNSI_PETCR (Flavone synthase OS=Petroselinum crispum GN=FNSI PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.984e-29
Identity = 74/235 (31.49%), Postives = 121/235 (51.49%), Query Frame = -2
Query:  175 GYGQAFVVSKDQKLDWGDMLFLLTQPANIRTTSLWPTIPTSLRATIEEYSLELQKVTIFLLKLMAKNLGIEPGKLASLFEDGIQGIRMNYYPPCAQANRVIGLTPHSDSVAXXXXXXXXXXXXXXVKKYGK-WVPVKPIPGAFIINIGDIIEIMSNGEYKSIEHRAVVNPEKERLSVAAFHSPNMNTTIGPLPNSVEDRAIY-KNITHEEFIKLVVTSKLD---GKNLLSHVRLE 864
            G+  + V+  D  +DW + +   + P N R  S WP  P   R+T E YS +L  +   LL+++++ +G+E G L     D  Q + +NYYP C Q +  +G+  H+D                  +  GK W+ V+P+ GAF++N+GD    +SNG +++ +H+AVVN    RLS+A F +P  N  + PL     ++AI  + IT+ E  K  +T  ++    K L    RL+
Sbjct:  113 GFTISTVLQGDDAMDWREFVTYFSYPINARDYSRWPKKPEGWRSTTEVYSEKLMVLGAKLLEVLSEAMGLEKGDLTKACVDMEQKVLINYYPTCPQPDLTLGVRRHTDPGTITILLQDMVGGLQATRDGGKTWITVQPVEGAFVVNLGDHGHYLSNGRFRNADHQAVVNSTSSRLSIATFQNPAQNAIVYPLKIREGEKAILDEAITYAEMYKKCMTKHIEVATRKKLAKEKRLQ 347          
BLAST of CX054047 vs. ExPASy Swiss-Prot
Match: FLS_CITUN (Flavonol synthase/flavanone 3-hydroxylase OS=Citrus unshiu GN=FLS PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.865e-28
Identity = 71/201 (35.32%), Postives = 105/201 (52.24%), Query Frame = -2
Query:  274 IEGYGQAFVVSKDQKLDWGDMLFLLTQPANIRTTSLWPTIPTSLRATIEEYSLELQKVTIFLLKLMAKNLGIEPGKL--ASLFEDGIQGIRMNYYPPCAQANRVIGLTPHSDSVAXXXXXXXXXXXXXXVKKYGKWVPVKPIPGAFIINIGDIIEIMSNGEYKSIEHRAVVNPEKERLSVAAFHSPNMNTTIGPLPNSVED 870
            ++GYG       + K  W D LF    P +      WP  P S RA  EEY+  +++V   L   ++  LG+E G L  A+  +D    +++NYYPPC + +  +G+  H+D  A               K   +W+  K IP A +I+IGD IEI+SNG+YK++ HR  VN +K R+S   F  P  +T +GPLP  V+D
Sbjct:  112 VQGYGTKLQKEVEGKKSWVDHLFHRVWPPSSINYRFWPKNPPSYRAVNEEYAKYMREVVDKLFTYLSLGLGVEGGVLKEAAGGDDIEYMLKINYYPPCPRPDLALGVVAHTDLSALTVLVPNEVPGLQVFKD-DRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVVGPLPQLVDD 311          
BLAST of CX054047 vs. ExPASy Swiss-Prot
Match: LDOX_MALDO (Leucoanthocyanidin dioxygenase OS=Malus domestica GN=ANS PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 6.383e-28
Identity = 72/225 (32.00%), Postives = 115/225 (51.11%), Query Frame = -2
Query:  232 IEGYGQAFVVSKDQKLDWGDMLFLLTQPANIRTTSLWPTIPTSLRATIEEYSLELQKVTIFLLKLMAKNLGIEPGKLASL---FEDGIQGIRMNYYPPCAQANRVIGLTPHSDSVAXXXXXXXXXXXXXXVKKYGKWVPVKPIPGAFIINIGDIIEIMSNGEYKSIEHRAVVNPEKERLSVAAF-HSPNMNTTIGPLPNSVED--------RAIYKNITHEEFIK 870
            I+GYG     +   +L+W D  F    P + R  S+WP  P        EY+ +L+++   +LK+++  LG++ G+L       E+ +  +++NYYP C Q    +G+  H+D  A                + GKWV  K +P + +++IGD +EI+SNG+YKSI HR +VN EK R+S A F   P     + PLP +V +        R   ++I H+ F K
Sbjct:  126 IQGYGSKLANNASGQLEWEDYFFHCVYPEDKRDLSIWPQTPADYIEATAEYAKQLRELATKVLKVLSLGLGLDEGRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFYE-GKWVTAKCVPNSIVMHIGDTLEILSNGKYKSILHRGMVNKEKVRISWAVFCEPPKEKIILKPLPETVSEDEPAMFPPRTFAEHIQHKLFRK 349          
BLAST of CX054047 vs. ExPASy Swiss-Prot
Match: FLS_EUSGR (Flavonol synthase/flavanone 3-hydroxylase OS=Eustoma grandiflorum GN=FLS PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.422e-27
Identity = 78/219 (35.62%), Postives = 108/219 (49.32%), Query Frame = -2
Query:  238 IEGYGQAFVVSKDQKLDWGDMLFLLTQPANIRTTSLWPTIPTSLRATIEEYSLELQKVTIFLLKLMAKNLGIEPGKLASLFEDGIQG------IRMNYYPPCAQANRVIGLTPHSDSVAXXXXXXXXXXXXXXVKKYGKWVPVKPIPGAFIINIGDIIEIMSNGEYKSIEHRAVVNPEKERLSVAAFHSPNMNTTIGPLPNSV--EDRAIYKNITHEEF 870
            IEGYG       D K  W D LF    P +      WP  P + R   EEY+  LQ V   L K ++  L +EP      F+DG  G      +++NYYPPC + +  +G+  H+D  A               K  G W   K IP A I++IGD +EIMSNG+YKS+ HR  VN EK R+S   F  P  +  +GP+P  V  E+ A +K   ++++
Sbjct:  112 IEGYGTRLQKEVDGKKGWVDHLFHKIWPPSAINYQFWPKNPPAYREANEEYAKRLQLVVDNLFKYLSLGLDLEPNS----FKDGAGGDDLVYLMKINYYPPCPRPDLALGVA-HTDMSAITVLVPNEVPGLQVYKD-GHWYDCKYIPNALIVHIGDQVEIMSNGKYKSVYHRTTVNKEKTRMSWPVFLEPPPDHEVGPIPKLVNEENPAKFKTKKYKDY 324          
BLAST of CX054047 vs. ExPASy Swiss-Prot
Match: LDOX_PETHY (Leucoanthocyanidin dioxygenase OS=Petunia hybrida GN=ANT17 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.857e-27
Identity = 74/225 (32.89%), Postives = 113/225 (50.22%), Query Frame = -2
Query:  232 IEGYGQAFVVSKDQKLDWGDMLFLLTQPANIRTTSLWPTIPTSLRATIEEYSLELQKVTIFLLKLMAKNLGIEPGKLASL---FEDGIQGIRMNYYPPCAQANRVIGLTPHSDSVAXXXXXXXXXXXXXXVKKYGKWVPVKPIPGAFIINIGDIIEIMSNGEYKSIEHRAVVNPEKERLSVAAF-HSPNMNTTIGPLPNSVED--------RAIYKNITHEEFIK 870
            ++GYG     S   +L+W D  F    P + R  S+WP  PT       EY+ +++ +   +L +++  LG+E G+L       ED +  +++NYYP C Q    +G+  H+D  A                + G+WV  K +P + I++IGD IEI+SNG+YKSI HR VVN EK R S A F   P     + PLP +V +        R   +++ H+ F K
Sbjct:  126 VQGYGSKLANSACGQLEWEDYFFHCAFPEDKRDLSIWPKNPTDYTPATSEYAKQIRALATKILTVLSIGLGLEEGRLEKEVGGMEDLLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFYE-GQWVTAKCVPNSIIMHIGDTIEILSNGKYKSILHRGVVNKEKVRFSWAIFCEPPKEKIILKPLPETVTEAEPPRFPPRTFAQHMAHKLFRK 349          
BLAST of CX054047 vs. ExPASy Swiss-Prot
Match: ACCO1_DORSP (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Doritaenopsis sp. GN=ACO1 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.857e-27
Identity = 67/224 (29.91%), Postives = 116/224 (51.79%), Query Frame = -2
Query:  202 QKLDWGDMLFLLTQPANIRTTSLWPTIPTSLRATIEEYSLELQKVTIFLLKLMAKNLGIEPGKLASLFEDGIQGI-----RMNYYPPCAQANRVIGLTPHSDSVAXXXXXXXXXXXXXXVKKYGKWVPVKPIPGAFIINIGDIIEIMSNGEYKSIEHRAVVNPEKERLSVAAFHSPNMNTTIGPLPNSVEDRA---------IYKNITHEEFIKLVVTSKLDGK 831
            + LDW    FL   P +    S  P +    R+T++E++LEL+ +   LL L+ ++LG+E G L  +F  G  G+     +++ YPPC +   + GL  H+D+                + K G+W+ V P+  + ++NIGD +E+++NG+YKS+ HR V   +  R+S+A+F++P  +  I P P  VE  A         IY     ++++ L +  K + K
Sbjct:   84 ENLDWESTFFLRHLPTS--NISQIPDLDDDCRSTMKEFALELENLAERLLDLLCEDLGLEKGYLKKVFCGGSDGLPTFGTKVSNYPPCPKPELIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGEWIDVPPVRHSIVVNIGDQLEVITNGKYKSVLHRVVAQTDGNRMSIASFYNPGSDAVIFPAPALVEKEAEEKEEKKKEIYPKFVFQDYMNLYIRKKFEAK 305          
BLAST of CX054047 vs. ExPASy Swiss-Prot
Match: ACCO1_MALDO (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Malus domestica PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.168e-27
Identity = 70/222 (31.53%), Postives = 116/222 (52.25%), Query Frame = -2
Query:  202 VVSKDQKLDWGDMLFLLTQPANIRTTSLWPTIPTSLRATIEEYSLELQKVTIFLLKLMAKNLGIEPGKLASLFEDGIQ---GIRMNYYPPCAQANRVIGLTPHSDSVAXXXXXXXXXXXXXXVKKYGKWVPVKPIPGAFIINIGDIIEIMSNGEYKSIEHRAVVNPEKERLSVAAFHSPNMNTTIGPLP----NSVEDRAIYKNITHEEFIKLVVTSKLDGK 846
            V S+   LDW    FL   P++    S  P +    R T++E+++EL+K+   LL L+ +NLG+E G L  +F        G +++ YPPC + + + GL  HSD+                + K G+WV V P+  + +IN+GD IE+++NG+YKS+ HR +   +  R+S+A+F++P  ++ I P P       ED   Y     ++++KL    K   K
Sbjct:   77 VQSEIHDLDWESTFFLRHLPSS--NISEIPDLEEEYRKTMKEFAVELEKLAEKLLDLLCENLGLEKGYLKKVFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHSDAGGIILLFQDDKVSGLQLLKDGEWVDVPPMHHSIVINLGDQIEVITNGKYKSVMHRVIAQSDGTRMSIASFYNPGNDSFISPAPAVLEKKTEDAPTYPKFVFDDYMKLYSGLKFQAK 296          
BLAST of CX054047 vs. ExPASy Swiss-Prot
Match: LDOX_ARATH (Leucoanthocyanidin dioxygenase OS=Arabidopsis thaliana GN=LDOX PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 9.217e-27
Identity = 77/229 (33.62%), Postives = 114/229 (49.78%), Query Frame = -2
Query:  202 IEGYGQAFVVSKDQKLDWGDMLFLLTQPANIRTTSLWPTIPTSLRATIEEYSLELQKVTIFLLKLMAKNLGIEPGKLASL---FEDGIQGIRMNYYPPCAQANRVIGLTPHSDSVAXXXXXXXXXXXXXXVKKYGKWVPVKPIPGAFIINIGDIIEIMSNGEYKSIEHRAVVNPEKERLSVAAF-HSPNMNTTIGPLPN--SVEDRAIYKNITHEEFIKLVVTSKLDGK 870
            I+GYG     +   +L+W D  F L  P   R  S+WP  P+       EY+  L+ +   + K ++  LG+EP +L       E+ +  +++NYYP C Q    +G+  H+D  A                + GKWV  K +P + +++IGD +EI+SNG+YKSI HR +VN EK R+S A F   P     + PLP   SVE  A +   T  + I+     KL GK
Sbjct:  122 IQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFYE-GKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIE----HKLFGK 345          
The following BLAST results are available for this feature:
BLAST of CX054047 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
SRG1_ARATH8.259e-6049.79Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 ... [more]
NCS1_COPJA1.010e-5749.57S-norcoclaurine synthase 1 OS=Coptis japonica GN=N... [more]
FNSI_PETCR1.984e-2931.49Flavone synthase OS=Petroselinum crispum GN=FNSI P... [more]
FLS_CITUN2.865e-2835.32Flavonol synthase/flavanone 3-hydroxylase OS=Citru... [more]
LDOX_MALDO6.383e-2832.00Leucoanthocyanidin dioxygenase OS=Malus domestica ... [more]
FLS_EUSGR1.422e-2735.62Flavonol synthase/flavanone 3-hydroxylase OS=Eusto... [more]
LDOX_PETHY1.857e-2732.89Leucoanthocyanidin dioxygenase OS=Petunia hybrida ... [more]
ACCO1_DORSP1.857e-2729.911-aminocyclopropane-1-carboxylate oxidase 1 OS=Dor... [more]
ACCO1_MALDO3.168e-2731.531-aminocyclopropane-1-carboxylate oxidase 1 OS=Mal... [more]
LDOX_ARATH9.217e-2733.62Leucoanthocyanidin dioxygenase OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_9H08_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-9H08-O16-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX054047 ID=CX054047; Name=CX054047; organism=Citrus sinensis; type=EST; length=871bp
TTTTTTTTTTTTTTTTTGATGAATAGAAATTAGATTATGAGTAAAATCTT
TTCTTGCCATTGCACAACTCAGTAAGCAGACAAAAGCGCTTAGAGGTTTA
ATCTGTAACTGGCATTAGATGGCATAGCATTTTTAAGGGGCACACTCTTG
GTGAAATTCTCTGACCATTTATGGCTCAAGTCTCACATGACTCAATAGGT
TCTTACCATCAAGTTTGCTGGTTACAACGAGCTTTATAAATTCTTCGTGT
GTTATATTCTTGTAAATTGCTCTGTCCTCCACGGAATTTGGTAAAGGACC
AATAGTAGTATTCATGTTTGGACTGTGAAATGCTGCTACCGAAAGGCGTT
CCTTTTCTGGATTCACAACAGCTCTGTGCTCTATGCTCTTGTATTCTCCA
TTGCTCATTATCTCAATGATGTCTCCAATATTGATAATGAATGCACCTGG
GATTGGTTTGACTGGTACCCACTTGCCATATTTCTTTACCTGTAAACCTT
GTACTTGGTTCACTTGAACCAACAATGTTAATGCAACAGAGTCAGAGTGT
GGAGTGAGACCAATAACCCTGTTGGCCTGGGCACATGGTGGATAATAATT
CATTCTTATTCCTTGTATACCATCTTCAAACAAGCTTGCAAGTTTCCCAG
GTTCAATCCCCAAATTCTTAGCCATCAACTTCAACAGAAAGATTGTAACC
TTTTGCAGTTCCAAAGAGTATTCCTCTATGGTTGCTCTTAAAGAAGTAGG
GATGGTAGGCCAGAGACTCGTGGTTCTAATATTGGCAGGTTGAGTAAGAA
GAAAAAGCATGTCTCCCCAATCAAGCTTTTGATCCTTGGAGACAACGAAA
GCTTGCCCATAACCTTCAATG
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