CX054029

Overview
NameCX054029
Unique NameCX054029
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length796
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX054029 vs. ExPASy Swiss-Prot
Match: IAA16_ARATH (Auxin-responsive protein IAA16 OS=Arabidopsis thaliana GN=IAA16 PE=2 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 5.810e-62
Identity = 120/158 (75.95%), Postives = 134/158 (84.81%), Query Frame = -3
Query:  357 SFRKNIMAVQK----DNEEGDNK--------AXXXXXSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIGLAPRAVEKCKNRS 794
            SFRKN+M+ QK    D  EG++K        +     + VA+VKVSMDGAPYLRK+DLKLYK+YQ+LS+AL KMFSSFTIGN G QGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPW+MFVDSCKR+RIMKGSEAIGLAPRA+EKCKNRS
Sbjct:   79 SFRKNVMSGQKPTTGDATEGNDKTSGSSGATSSASACATVAYVKVSMDGAPYLRKIDLKLYKTYQDLSNALSKMFSSFTIGNYGPQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRIRIMKGSEAIGLAPRALEKCKNRS 236          
BLAST of CX054029 vs. ExPASy Swiss-Prot
Match: AUX28_SOYBN (Auxin-induced protein AUX28 OS=Glycine max GN=AUX28 PE=2 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 3.188e-60
Identity = 117/148 (79.05%), Postives = 126/148 (85.14%), Query Frame = -3
Query:  357 SFRKNIMAVQKDNEEGDNKAXXXXXSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAI--GLAPRAVEKCKNRS 794
            SFRKN++AVQK   E   K       N +FVKVSMDGAPYLRKVDLK+YKSY+ELSD+LGKMFSSFT GNC SQGMKDFMNESKL DLLN SDYVPTYEDKDGDWMLVGDVPW+MFV+SCKRLRIMKG EAI  GLAPRA+ KCKNRS
Sbjct:   99 SFRKNMLAVQKSVGEESEK---NSSPNASFVKVSMDGAPYLRKVDLKMYKSYRELSDSLGKMFSSFTFGNCESQGMKDFMNESKLNDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGKEAIGLGLAPRAMAKCKNRS 243          
BLAST of CX054029 vs. ExPASy Swiss-Prot
Match: IAA30_ORYSJ (Auxin-responsive protein IAA30 OS=Oryza sativa subsp. japonica GN=IAA30 PE=2 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 6.648e-58
Identity = 114/150 (76.00%), Postives = 125/150 (83.33%), Query Frame = -3
Query:  357 SFRKNIMAVQ----KDNEEGDNKAXXXXXSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIGLAPRAVEKCKNRS 794
            S+RKNI+AVQ    KD  +G         +  AFVKVSMDGAPYLRKVDLK+YKSY ELS AL KMFSSFTIGNCGS G+   MNESK+ DLLNGS+YVPTYEDKDGDWMLVGDVPW+MFV+SCKRLRIMKGSEAIGLAPRA+EKCKNRS
Sbjct:  129 SYRKNILAVQADKGKDAADGGGDKSGAGAAAAAFVKVSMDGAPYLRKVDLKMYKSYLELSKALEKMFSSFTIGNCGSHGVNG-MNESKIADLLNGSEYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAMEKCKNRS 277          
BLAST of CX054029 vs. ExPASy Swiss-Prot
Match: IAA14_ARATH (Auxin-responsive protein IAA14 OS=Arabidopsis thaliana GN=IAA14 PE=1 SV=2)

HSP 1 Score: 220.32 bits (560), Expect = 9.599e-57
Identity = 109/146 (74.66%), Postives = 125/146 (85.62%), Query Frame = -3
Query:  357 SFRKNIMAVQKDNEEGDNKAXXXXXSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIGLAPRAVEKCKNRS 794
            ++RKN+MA QK  E    +A       VAFVKVSMDGAPYLRKVDLK+Y SY++LSDAL KMFSSFT+G+ G+QGM DFMNESK++DLLN S+YVP+YEDKDGDWMLVGDVPW MFV+SCKRLRIMKGSEAIGLAPRA+EK KNRS
Sbjct:   85 NYRKNVMANQKSGEA--EEAMSSGGGTVAFVKVSMDGAPYLRKVDLKMYTSYKDLSDALAKMFSSFTMGSYGAQGMIDFMNESKVMDLLNSSEYVPSYEDKDGDWMLVGDVPWPMFVESCKRLRIMKGSEAIGLAPRAMEKFKNRS 228          
BLAST of CX054029 vs. ExPASy Swiss-Prot
Match: IAA7_ARATH (Auxin-responsive protein IAA7 OS=Arabidopsis thaliana GN=IAA7 PE=1 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 4.033e-55
Identity = 109/153 (71.24%), Postives = 127/153 (83.01%), Query Frame = -3
Query:  357 SFRKNIMAVQKDN---EEGDNKAXXXXXSNVA---FVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIGLAPRAVEK-CKNRS 794
            ++RKN+M  QK +   EE  ++         A    VKVSMDGAPYLRKVDLK+YKSYQ+LSDAL KMFSSFT+GN G+QGM DFMNESKL++LLN S+YVP+YEDKDGDWMLVGDVPW+MFV+SCKRLRIMKGSEA+GLAPRA+EK CKNRS
Sbjct:   91 NYRKNMMTQQKTSSGAEEASSEKAGNFGGGAAGAGLVKVSMDGAPYLRKVDLKMYKSYQDLSDALAKMFSSFTMGNYGAQGMIDFMNESKLMNLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAVGLAPRAMEKYCKNRS 243          
BLAST of CX054029 vs. ExPASy Swiss-Prot
Match: IAA17_ARATH (Auxin-responsive protein IAA17 OS=Arabidopsis thaliana GN=IAA17 PE=1 SV=2)

HSP 1 Score: 200.675 bits (509), Expect = 7.871e-51
Identity = 99/147 (67.35%), Postives = 119/147 (80.95%), Query Frame = -3
Query:  357 SFRKNIMAVQKDNEEGDNKAXXXXXSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIG-NCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIGLAPRAVEKCKNRS 794
            S+RKN+M   + +  G   A        AFVKVSMDGAPYLRK+DL++YKSY ELS+AL  MFSSFT+G + G +GM DFMNE KL+DL+N  DYVP+YEDKDGDWMLVGDVPW MFVD+CKRLR+MKGS+AIGLAPRA+EKCK+R+
Sbjct:   91 SYRKNVMVSCQKSSGGPEAA--------AFVKVSMDGAPYLRKIDLRMYKSYDELSNALSNMFSSFTMGKHGGEEGMIDFMNERKLMDLVNSWDYVPSYEDKDGDWMLVGDVPWPMFVDTCKRLRLMKGSDAIGLAPRAMEKCKSRA 229          
BLAST of CX054029 vs. ExPASy Swiss-Prot
Match: IAA27_ARATH (Auxin-responsive protein IAA27 OS=Arabidopsis thaliana GN=IAA27 PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 2.006e-46
Identity = 96/154 (62.34%), Postives = 114/154 (74.03%), Query Frame = -3
Query:  357 SFRKNIMAVQKDNEEGDN------KAXXXXXSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGM--KDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIGLAPRAVEKCKNRS 794
            SFRKN MA  +  + G+N      +A         +VKVSM+GAPYLRK+DLK YKSY ELS AL KMFS FTIG  GS G   +D +NES+L DLL GS+YV TYEDKD DWMLVGDVPW+MF+ SCK+LRIMK SEAIGLAPR +EKC++R+
Sbjct:  152 SFRKNSMASSQSQKPGNNSETEEAEAKSGPEQPCLYVKVSMEGAPYLRKIDLKTYKSYLELSSALEKMFSCFTIGQFGSHGGCGRDGLNESRLTDLLRGSEYVVTYEDKDSDWMLVGDVPWEMFICSCKKLRIMKSSEAIGLAPRVMEKCRSRN 305          
BLAST of CX054029 vs. ExPASy Swiss-Prot
Match: IAA9_ARATH (Auxin-responsive protein IAA9 OS=Arabidopsis thaliana GN=IAA9 PE=1 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 8.429e-45
Identity = 94/151 (62.25%), Postives = 115/151 (76.16%), Query Frame = -3
Query:  357 SFRKNIMAVQ-KDNEEGDNKAXXXXXSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGM--KDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIGL--APRAVEKCKNRS 794
            S+RKN +A   K+++E D +          FVKVSMDGAPYLRKVDL+ Y +Y ELS AL KMF++FT+G CGS G   KD ++E+KL DLLNG DYV TYEDKDGDWMLVGDVPW+MF+D CK+L+IMKG +AIGL  APRA+EK K R+
Sbjct:  192 SYRKNTLATTCKNSDEVDGRPGS----GALFVKVSMDGAPYLRKVDLRSYTNYGELSSALEKMFTTFTLGQCGSNGAAGKDMLSETKLKDLLNGKDYVLTYEDKDGDWMLVGDVPWEMFIDVCKKLKIMKGCDAIGLAAAPRAMEKSKMRA 338          
BLAST of CX054029 vs. ExPASy Swiss-Prot
Match: IAA8_ARATH (Auxin-responsive protein IAA8 OS=Arabidopsis thaliana GN=IAA8 PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.452e-44
Identity = 92/149 (61.74%), Postives = 114/149 (76.51%), Query Frame = -3
Query:  360 SFRKNIMA--VQKDNEEGDNKAXXXXXSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGM--KDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIGLAPRAVEKCKNR 794
            S+RKN MA    K+ +E D K        V FVKVSMDGAPYLRKVDL+ Y SYQ+LS AL KMFS FT+G CG  G   ++ M+E KL DLL+GS++V TYEDKDGDWMLVGDVPW++F ++C++L+IMKGS++IGLAP AVEK KN+
Sbjct:  174 SYRKNTMASSTSKNTDEVDGKPGL----GVLFVKVSMDGAPYLRKVDLRTYTSYQQLSSALEKMFSCFTLGQCGLHGAQGRERMSEIKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEIFTETCQKLKIMKGSDSIGLAPGAVEKSKNK 318          
BLAST of CX054029 vs. ExPASy Swiss-Prot
Match: IAA21_ORYSJ (Auxin-responsive protein IAA21 OS=Oryza sativa subsp. japonica GN=IAA21 PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.590e-43
Identity = 91/150 (60.67%), Postives = 115/150 (76.67%), Query Frame = -3
Query:  357 SFRKNIMAVQKDNEEG--DNKAXXXXXSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGM--KDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIGLAPRAVEKCKNRS 794
            S+RKN MA+ +   +G  D +A     S   +VKVSMDGAPYLRKVDLK+YK+Y+ELS AL KMFS FT+G+  S G   +D +++ +L+DL NG++ V TYEDKD DWMLVGDVPW MF DSC+RLRIMKGS+A+GLAPRA +K KNR+
Sbjct:  117 SYRKNTMAMSQPALKGKDDGEAKQAPASGCLYVKVSMDGAPYLRKVDLKMYKNYKELSLALEKMFSCFTVGHGESNGKSGRDGLSDCRLMDLKNGTELVLTYEDKDEDWMLVGDVPWRMFTDSCRRLRIMKGSDAVGLAPRATDKSKNRN 266          
The following BLAST results are available for this feature:
BLAST of CX054029 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
IAA16_ARATH5.810e-6275.95Auxin-responsive protein IAA16 OS=Arabidopsis thal... [more]
AUX28_SOYBN3.188e-6079.05Auxin-induced protein AUX28 OS=Glycine max GN=AUX2... [more]
IAA30_ORYSJ6.648e-5876.00Auxin-responsive protein IAA30 OS=Oryza sativa sub... [more]
IAA14_ARATH9.599e-5774.66Auxin-responsive protein IAA14 OS=Arabidopsis thal... [more]
IAA7_ARATH4.033e-5571.24Auxin-responsive protein IAA7 OS=Arabidopsis thali... [more]
IAA17_ARATH7.871e-5167.35Auxin-responsive protein IAA17 OS=Arabidopsis thal... [more]
IAA27_ARATH2.006e-4662.34Auxin-responsive protein IAA27 OS=Arabidopsis thal... [more]
IAA9_ARATH8.429e-4562.25Auxin-responsive protein IAA9 OS=Arabidopsis thali... [more]
IAA8_ARATH2.452e-4461.74Auxin-responsive protein IAA8 OS=Arabidopsis thali... [more]
IAA21_ORYSJ1.590e-4360.67Auxin-responsive protein IAA21 OS=Oryza sativa sub... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_9G09_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-9G09-M18-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX054029 ID=CX054029; Name=CX054029; organism=Citrus sinensis; type=EST; length=796bp
TTTTAAAATAAATAATAAGATATTATTATTATTATTGGACAAGTCATAGA
CAATAAACTCAAGTTACAGAAGTGGGAAGTTGGAGACTTATAAACATGTT
CTAAGAATATTAATTATTGCTTCTTGTCACTAAACAAATCTCTCTCAGAA
TATATTCCAACTCTCTACTAATTACTAACATTTTAAAAACAAAAACCCAA
AAAAGAGAAAAGAAAAAAAAAAACGCATGATACATAAGCACATCCAAACT
CTCCCTGCTTGATTCCTCAACAAGCCGGTTTGCCCTTTTGGTTTTGAAAT
CAGCTTTTTTAACAAGCTGCTTTTGGCAAAAAGTTGCTGATCATAATCAA
TCTTCAGCTTCTGTTCTTGCACTTCTCAACTGCCCTTGGTGCAAGTCCAA
TGGCCTCGGATCCTTTCATTATTCTTAAGCGTTTGCATGAATCAACAAAC
ATATCCCATGGTACATCACCAACAAGCATCCAATCTCCATCTTTGTCTTC
ATAAGTAGGTACATAATCTGAGCCATTCAAAAGATCAATCAGTTTGCTCT
CATTCATAAAATCCTTCATCCCTTGAGACCCACAGTTACCAATGGTGAAA
GAGCTGAACATTTTGCCAAGGGCATCAGAGAGTTCTTGGTAGCTTTTGTA
TAGCTTCAAGTCAACCTTGCGCAAGTATGGGGCACCATCCATGCTCACTT
TAACAAAAGCTACATTGCTGCTGCTGCTGCTGCTAGCCTTATTATCACCT
TCTTCATTGTCCTTTTGGACGGCCATGATGTTCTTTCTGAATGATC
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