CX053916

Overview
NameCX053916
Unique NameCX053916
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length922
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX053916 vs. ExPASy Swiss-Prot
Match: YMF16_ARATH (Uncharacterized tatC-like protein ymf16 OS=Arabidopsis thaliana GN=YMF16 PE=2 SV=2)

HSP 1 Score: 64.3142 bits (155), Expect = 1.342e-17
Identity = 30/43 (69.77%), Postives = 31/43 (72.09%), Query Frame = -2 
Query:   43 TYDAMFSIASSYFVFPLQKYQFWCFLILSCYREQRTNNNRFLY 171
            T+ A  SIA SYFVFPL  YQ WCFLI SCY EQRT  NRF Y
Sbjct:   74 TFVATSSIACSYFVFPLISYQIWCFLIPSCYGEQRTKYNRFFY 116

HSP 2 Score: 46.595 bits (109), Expect = 1.342e-17
Identity = 25/40 (62.50%), Postives = 31/40 (77.50%), Query Frame = -1 
Query:  227 HEFHFALEIILREVQICFV*VLINLGLTRFTHYYFLKELI 346
            +EF+FALE IL EV+I  V +LI LGLT FT Y+F +ELI
Sbjct:    8 YEFNFALETILGEVRIRSVRILIGLGLTWFTCYWFSEELI 47
The following BLAST results are available for this feature:
BLAST of CX053916 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
YMF16_ARATH1.342e-1769.77Uncharacterized tatC-like protein ymf16 OS=Arabido... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS09_9A11_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-9A11-A22-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX053916 ID=CX053916; Name=CX053916; organism=Citrus sinensis; type=EST; length=922bp
AGAAGTTATGAATATGAAAAAGGAAAAGTGGGAACCGCTAAAATATAGGA
ATCGATTGTTATTCGTCCTTTGTTCCCTATAGCAACTAAGGATTAAAAAG
CACCAAAATTGATATTTTTGTAAAGGAAAGACGAAGTAAGAGGATGCTAT
TGAAAACATCGCATCATATGTCGGGGGGCGTCTATTGATTGTGTACTAAC
AAAATAGAAAAGGTAGGAAATGAAGATATTAACTCTTTTAGGAAGTAGTA
ATGCGTAAACCTTGTCAAACCAAGGTTGATCAATACCTAAACAAAACAGA
TTTGAACTTCTCGTAGAATAATTTCCAGTGCAAAATGAAATTCATGAGAT
AGATAAATATATATAGATATAGATATATATTTGATTAGAACTCCAAGCCC
GCGTAAGAGAGGAAAGGTTGGTTGCACATTTTTTAGGTGGAAGTATTGCC
TACTTATCGATTACTTTCTCTACTTCTGAGGACAATCAATCTCAAACGCA
AATAATGAGTGGAACTATTGACTCTGCAAACTCTGGCTATCACCTTTGGA
GCATTATTTTTCCTATTATTTTCCTTTAACTTTTGGACTAAGCCAGAATG
ATTTCAAGATAAGCTCTGCGCCATTCCATTAAAATTAATAGAATAATGAA
CATAATAAAAGAACTTATTTTGTACTTTTATTTCTCTTTTTTGTGGGAAA
GTAGTTTATACAACTTTACTATGCCTATGACCCTCTTTTTGTACCAAAGG
ACTTGATGTCACAACTTTTGTGGAACGGGGTCCTCGGCATACCCGCCAAG
AGAAGTAAAAAAAAAAAAGAAAAGGAAAAAAAGAACAAAGCAATTTCACC
AATGCAAAATTTTCATGAATGGAATATATCTCANGAGAGTTATTTCTCCA
TTTTGAGGGCATAAACTGTTAT
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