CX053915

Overview
NameCX053915
Unique NameCX053915
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length844
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX053915 vs. ExPASy Swiss-Prot
Match: ARP5_ARATH (Actin-related protein 5 OS=Arabidopsis thaliana GN=ARP5 PE=1 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 4.427e-71
Identity = 146/282 (51.77%), Postives = 182/282 (64.54%), Query Frame = 1
Query:    1 EDLKMEHCYIAPDYFSEAQLFQKGTKEAEHKTRCWQLPWVXXXXXXXXXXXXXXXXXXXXXXQGQRLREMAEAKRSSRINELENQIHGXXXXXXXXXXXXXNDIAAFLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAELEKT-DASMNEKYPLIHIPDNMLSLEQLKEKRRQIFLKTTTEGRQRAKQKRVXXXXXXXXXXXXXXXXXXXXPELYVEQMRAKYKELFEKIDQRKRLKXXXXXXXXXXXXXXXXXXERLNAAQRERMRLLTTAAFDRGK 843
            EDLK+EHCYIAPDY SE +LFQ+G KEAE KT  WQLPW+                      QGQRLREMAEAKR S+IN++ENQ+               +DI  FLSDTGY SRQE+EST+ K+TQSLRKA+GE K E AE E+  D+  NEKYPL+++PD++L+ EQLK+K+RQ+FLKTT EGR RA+QKR                     PE Y+E+++A+YKE+ E+++Q+KRLK                  ERL+AAQRERMRLLTTAAFDRGK
Sbjct:   97 EDLKLEHCYIAPDYASEIRLFQEGRKEAEEKTSYWQLPWIPPPTEVPPSEEEIARKAAIREKQGQRLREMAEAKRVSKINDMENQLISLRFLLKQVDQVEEDDIPTFLSDTGYASRQELESTITKVTQSLRKARGEPKNEPAEYEENPDSLNNEKYPLMNVPDDILTPEQLKDKKRQMFLKTTAEGRLRARQKRNEEELEKEKRNQLEEERRRENPESYLEELQAQYKEVLERVEQKKRLK-TNGSSNGNNKSGGIGRGERLSAAQRERMRLLTTAAFDRGK 377          
BLAST of CX053915 vs. ExPASy Swiss-Prot
Match: ARP5_ORYSJ (Actin-related protein 5 OS=Oryza sativa subsp. japonica GN=ARP5 PE=3 SV=2)

HSP 1 Score: 229.18 bits (583), Expect = 2.279e-59
Identity = 132/282 (46.81%), Postives = 164/282 (58.16%), Query Frame = 1
Query:    1 EDLKMEHCYIAPDYFSEAQLFQKGTKEAEHKTRCWQLPWVXXXXXXXXXXXXXXXXXXXXXXQGQRLREMAEAKRSSRINELENQIHGXXXXXXXXXXXXXNDIAAFLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLSLEQLKEKRRQIFLKTTTEGRQRAKQKRVXXXXXXXXXXXXXXXXXXXXPELYVEQMRAKYKELFEKIDQRKRLK-XXXXXXXXXXXXXXXXXXERLNAAQRERMRLLTTAAFDRGK 843
            E+LK EHCY+A DY SE Q+F+   +EAE KTR WQLPWV                       GQRLR+MA AKRS +I ELE Q+                +  A L  +GY+S+QEI+S ++K TQSLRKAKGE    +   EK DAS  +KYPL+ +PD  L+ EQLKEK++QI LKTTTEGR RAKQ+R                     PELY+E++RA+Y EL +++DQRKR K                   ERLNAAQ+ERMRLLT+AAFDRGK
Sbjct:   91 EELKKEHCYVALDYMSELQIFKNNKEEAEEKTRYWQLPWVPPPVEEPPSEEELARKAALKEKAGQRLRDMAAAKRSQKIAELEKQLSYLEELMEQLDGAEEEEATAILGRSGYLSQQEIKSAILKATQSLRKAKGESNGNE---EKADASGVDKYPLVSVPDETLTPEQLKEKKKQILLKTTTEGRMRAKQRRA---EEEALREKQEEERRLENPELYLEELRARYSELSDRVDQRKRQKLNGGKTNGNHNSSGGVGRGERLNAAQKERMRLLTSAAFDRGK 366          
BLAST of CX053915 vs. ExPASy Swiss-Prot
Match: ARP5_ORYSI (Actin-related protein 5 OS=Oryza sativa subsp. indica GN=ARP5 PE=2 SV=2)

HSP 1 Score: 229.18 bits (583), Expect = 2.279e-59
Identity = 132/282 (46.81%), Postives = 164/282 (58.16%), Query Frame = 1
Query:    1 EDLKMEHCYIAPDYFSEAQLFQKGTKEAEHKTRCWQLPWVXXXXXXXXXXXXXXXXXXXXXXQGQRLREMAEAKRSSRINELENQIHGXXXXXXXXXXXXXNDIAAFLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLSLEQLKEKRRQIFLKTTTEGRQRAKQKRVXXXXXXXXXXXXXXXXXXXXPELYVEQMRAKYKELFEKIDQRKRLK-XXXXXXXXXXXXXXXXXXERLNAAQRERMRLLTTAAFDRGK 843
            E+LK EHCY+A DY SE Q+F+   +EAE KTR WQLPWV                       GQRLR+MA AKRS +I ELE Q+                +  A L  +GY+S+QEI+S ++K TQSLRKAKGE    +   EK DAS  +KYPL+ +PD  L+ EQLKEK++QI LKTTTEGR RAKQ+R                     PELY+E++RA+Y EL +++DQRKR K                   ERLNAAQ+ERMRLLT+AAFDRGK
Sbjct:   91 EELKKEHCYVALDYMSELQIFKNNKEEAEEKTRYWQLPWVPPPVEEPPSEEELARKAALKEKAGQRLRDMAAAKRSQKIAELEKQLSYLEELMEQLDGAEEEEATAILGRSGYLSQQEIKSAILKATQSLRKAKGESNGNE---EKADASGVDKYPLVSVPDETLTPEQLKEKKKQILLKTTTEGRMRAKQRRA---EEEALREKQEEERRLENPELYLEELRARYSELSDRVDQRKRQKLNGGKTNGNHNSSGGVGRGERLNAAQKERMRLLTSAAFDRGK 366          
The following BLAST results are available for this feature:
BLAST of CX053915 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ARP5_ARATH4.427e-7151.77Actin-related protein 5 OS=Arabidopsis thaliana GN... [more]
ARP5_ORYSJ2.279e-5946.81Actin-related protein 5 OS=Oryza sativa subsp. jap... [more]
ARP5_ORYSI2.279e-5946.81Actin-related protein 5 OS=Oryza sativa subsp. ind... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS09_9A10_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-9A10-A20-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX053915 ID=CX053915; Name=CX053915; organism=Citrus sinensis; type=EST; length=844bp
GAAGACCTGAAAATGGAGCATTGTTATATTGCACCTGATTATTTCTCAGA
AGCTCAACTATTTCAGAAAGGGACCAAGGAAGCTGAACACAAAACCAGGT
GTTGGCAACTTCCATGGGTTCCACCACCAACTGAGGAACCTCCTTCAGAA
GAAGAGATTGCGAGGAAGGCAGCCATTAAAGAGAGACAAGGTCAAAGGTT
GCGGGAGATGGCTGAGGCTAAGAGATCTTCTAGGATAAATGAACTGGAAA
ATCAAATTCATGGTTTAGAGTTTCTTTTACAACAACTTGAACAAGTGGAA
GAGAATGACATTGCAGCTTTCCTTTCAGACACCGGTTATGTCTCCCGGCA
GGAAATAGAATCTACCCTTGTGAAACTTACACAATCTTTAAGAAAAGCTA
AAGGGGAACGGAAGGTTGAACAAGCTGAACTTGAGAAGACTGATGCCTCT
ATGAATGAAAAGTATCCTCTTATTCACATCCCTGACAACATGCTGTCCCT
TGAGCAGCTTAAGGAGAAGAGAAGACAGATTTTCCTTAAAACTACAACTG
AGGGCCGCCAGCGAGCTAAACAAAAGCGTGTTGAGGAGGAGTTGGAACAA
GAGAAAAAAAACCAAGAAGAAGAAGAAAGACGCTTAGAGAACCCAGAACT
CTATGTAGAGCAGATGCGGGCCAAGTACAAAGAACTTTTTGAGAAAATTG
ACCAGCGAAAACGGCTTAAGACAAATGGGAACCACACAAATGGAAATAAC
ACATCTGGAGGGGTTGGCCGTGGTGAGAGATTGAATGCTGCTCAGAGAGA
AAGGATGCGCCTCCTAACAACGGCAGCCTTTGATCGAGGGAAGG
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