CX053912

Overview
NameCX053912
Unique NameCX053912
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length835
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX053912 vs. ExPASy Swiss-Prot
Match: PATL5_ARATH (Patellin-5 OS=Arabidopsis thaliana GN=PATL5 PE=1 SV=2)

HSP 1 Score: 254.988 bits (650), Expect = 3.847e-67
Identity = 127/196 (64.80%), Postives = 152/196 (77.55%), Query Frame = -1
Query:  263 DLKNSPGPAKWELRQATKQALQLLQDNYPEFVAKQVFINVPWWYLAVNRMISPFLTQRTRSKFVFAGPSKSAETLLRYIAAEQLPVKYGGLSK-----VGEFAATDAVTEITVKPAAKHTVEFPVTEECHLTWEVRVVGWEVSYGAEFVPSTEGSYTVIIQKAKKLASNAEQPVVCDSFKIVEPGKVVLTIDNPTS 835
            DLKNSPGP K ELR ATKQAL LLQDNYPEFV+KQ+FINVPWWYLA  R+ISPF++QR++SK VFAGPS+SAETLL+YI+ E +PV+YGGLS        +F   D  TEITVKP  K TVE  V E+C + WE+RVVGWEVSYGAEFVP  +  YTVIIQK +K+ +  E  VV  SFK+ E G+++LT+DNPTS
Sbjct:  457 DLKNSPGPGKTELRLATKQALHLLQDNYPEFVSKQIFINVPWWYLAFYRIISPFMSQRSKSKLVFAGPSRSAETLLKYISPEHVPVQYGGLSVDNCECNSDFTHDDIATEITVKPTTKQTVEIIVYEKCTIVWEIRVVGWEVSYGAEFVPENKEGYTVIIQKPRKMTAKNEL-VVSHSFKVGEVGRILLTVDNPTS 651          
BLAST of CX053912 vs. ExPASy Swiss-Prot
Match: PATL3_ARATH (Patellin-3 OS=Arabidopsis thaliana GN=PATL3 PE=1 SV=2)

HSP 1 Score: 241.121 bits (614), Expect = 5.749e-63
Identity = 118/196 (60.20%), Postives = 149/196 (76.02%), Query Frame = -1
Query:  263 DLKNSPGPAKWELRQATKQALQLLQDNYPEFVAKQVFINVPWWYLAVNRMISPFLTQRTRSKFVFAGPSKSAETLLRYIAAEQLPVKYGGLSK-----VGEFAATDAVTEITVKPAAKHTVEFPVTEECHLTWEVRVVGWEVSYGAEFVPSTEGSYTVIIQKAKKLASNAEQPVVCDSFKIVEPGKVVLTIDNPTS 835
            D+KNSPG  K ELR ATKQA++LLQDNYPEFV KQ FINVPWWYL    +I PF+T R++SK VFAGPS+SAETL +YI+ EQ+PV+YGGLS        +F+  D+ +EITVKP  K TVE  + E+C L WE+RV GWEVSY AEFVP  + +YTV+IQK +K+   +++PV+  SFK+ E GKV+LT+DNPTS
Sbjct:  282 DMKNSPGLGKKELRSATKQAVELLQDNYPEFVFKQAFINVPWWYLVFYTVIGPFMTPRSKSKLVFAGPSRSAETLFKYISPEQVPVQYGGLSVDPCDCNPDFSLEDSASEITVKPGTKQTVEIIIYEKCELVWEIRVTGWEVSYKAEFVPEEKDAYTVVIQKPRKMRP-SDEPVLTHSFKVNELGKVLLTVDNPTS 476          
BLAST of CX053912 vs. ExPASy Swiss-Prot
Match: PATL1_ARATH (Patellin-1 OS=Arabidopsis thaliana GN=PATL1 PE=1 SV=2)

HSP 1 Score: 217.624 bits (553), Expect = 6.807e-56
Identity = 105/192 (54.69%), Postives = 141/192 (73.44%), Query Frame = -1
Query:  263 DLKNSPGPAKWELRQATKQALQLLQDNYPEFVAKQVFINVPWWYLAVNRMISPFLTQ-RTRSKFVFAGPSKSAETLLRYIAAEQLPVKYGGLSKVGEFAATDAVTEITVKPAAKHTVEFPVTEECHLTWEVRVVGWEVSYGAEFVPSTEGSYTVIIQKAKKLASNAEQPVVCDSFKIVEPGKVVLTIDNPTS 835
            D +N+PG  K  L Q  ++A++  +DNYPEF AK++FINVPWWY+   +     +T  RTRSK V AGPSKSA+T+ +YIA EQ+PVKYGGLSK       + +TE  VKPAA +T+E P +E C L+WE+RV+G +VSYGA+F P+TEGSY VI+ K +K+ S  ++PV+ DSFK+ EPGK+V+TIDN TS
Sbjct:  372 DFRNAPGLGKRALWQFIRRAVKQFEDNYPEFAAKELFINVPWWYIPYYKTFGSIITSPRTRSKMVLAGPSKSADTIFKYIAPEQVPVKYGGLSKDTPLTE-ETITEAIVKPAANYTIELPASEACTLSWELRVLGADVSYGAQFEPTTEGSYAVIVSKTRKIGS-TDEPVITDSFKVGEPGKIVITIDNQTS 561          
BLAST of CX053912 vs. ExPASy Swiss-Prot
Match: PATL2_ARATH (Patellin-2 OS=Arabidopsis thaliana GN=PATL2 PE=1 SV=2)

HSP 1 Score: 207.994 bits (528), Expect = 5.393e-53
Identity = 102/191 (53.40%), Postives = 135/191 (70.68%), Query Frame = -1
Query:  266 DLKNSPGPAKWELRQATKQALQLLQDNYPEFVAKQVFINVPWWYLAVNRMISPFLTQ-RTRSKFVFAGPSKSAETLLRYIAAEQLPVKYGGLSKVGEFAATDAVTEITVKPAAKHTVEFPVTEECHLTWEVRVVGWEVSYGAEFVPSTEGSYTVIIQKAKKLASNAEQPVVCDSFKIVEPGKVVLTIDNPT 835
            D +N+PG  +  L Q  K+A++  +DNYPEFVAK++FINVPWWY+   +     +T  RTRSK V +GPSKSAET+ +Y+A E +PVKYGGLSK   F   D VTE  VK  +K+T++ P TE   L+WE+RV+G +VSYGA+F PS E SYTVI+ K +K+    ++PV+ DSFK  E GKVV+TIDN T
Sbjct:  480 DFRNAPGLGQRALWQFIKRAVKQFEDNYPEFVAKELFINVPWWYIPYYKTFGSIITSPRTRSKMVLSGPSKSAETIFKYVAPEVVPVKYGGLSKDSPFTVEDGVTEAVVKSTSKYTIDLPATEGSTLSWELRVLGADVSYGAQFEPSNEASYTVIVSKNRKVGL-TDEPVITDSFKASEAGKVVITIDNQT 669          
BLAST of CX053912 vs. ExPASy Swiss-Prot
Match: PATL4_ARATH (Patellin-4 OS=Arabidopsis thaliana GN=PATL4 PE=1 SV=2)

HSP 1 Score: 200.675 bits (509), Expect = 8.611e-51
Identity = 98/190 (51.58%), Postives = 140/190 (73.68%), Query Frame = -1
Query:  272 DLKNSPGPAKWELRQATKQALQLLQDNYPEFVAKQVFINVPWWYLAVNRMISPFLTQRTRSKFVFAGPSKSAETLLRYIAAEQLPVKYGGLSKVGEFA-ATDAVTEITVKPAAKHTVEFPVTE-ECHLTWEVRVVGWEVSYGAEFVPSTEGSYTVIIQKAKKLASNAEQPVVCDSFKIVEPGKVVLTIDN 835
            DLKN+PG ++ E+    K+ ++ LQDNYPEFV++ +FINVP+W+ A+  ++SPFLTQRT+SKFV A P+K  ETLL+YI A++LPV+YGG   V +   + + V+E+ VKP +  T+E P  E E  L W++ V+GWEV+Y  EFVP+ EG+YTVI+QK KK+ +N E P + +SFK  + GK+VLT+DN
Sbjct:  333 DLKNAPGVSRTEIWVGIKKVIETLQDNYPEFVSRNIFINVPFWFYAMRAVLSPFLTQRTKSKFVVARPAKVRETLLKYIPADELPVQYGGFKTVDDTEFSNETVSEVVVKPGSSETIEIPAPETEGTLVWDIAVLGWEVNYKEEFVPTEEGAYTVIVQKVKKMGAN-EGP-IRNSFKNSQAGKIVLTVDN 520          
BLAST of CX053912 vs. ExPASy Swiss-Prot
Match: PATL6_ARATH (Patellin-6 OS=Arabidopsis thaliana GN=PATL6 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.378e-40
Identity = 86/194 (44.33%), Postives = 124/194 (63.92%), Query Frame = -1
Query:  263 DLKNSPGPAKWELRQATKQALQLLQDNYPEFVAKQVFINVPWWYLAVNRMISPFLTQRTRSKFVFAGPSKSAETLLRYIAAEQLPVKYGGLSKV--GEFAATDAVTEITVKPAAKHTVEFPVTE-ECHLTWEVRVVGWEVSYGAEFVPSTEGSYTVIIQKAKKLASNAEQPVVCDSFKIVEPGKVVLTIDNPTS 835
            DLK+ P   K ELR A+ Q L L QDNYPE VA ++FINVPW++  +  M SPFLTQRT+SKFV +    +AETL ++I  E +PV+YGGLS+    +       +E ++K   K  ++    E    +TW++ V GW++ Y AEFVP+ E SY ++++K KK+ +  E   VC+SF  VE GK++L++DN  S
Sbjct:  202 DLKDMP---KRELRVASNQILSLFQDNYPELVATKIFINVPWYFSVIYSMFSPFLTQRTKSKFVMSKEGNAAETLYKFIRPEDIPVQYGGLSRPTDSQNGPPKPASEFSIKGGEKVNIQIEGIEGGATITWDIVVGGWDLEYSAEFVPNAEESYAIVVEKPKKMKATDE--AVCNSFTTVEAGKLILSVDNTLS 390          
The following BLAST results are available for this feature:
BLAST of CX053912 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PATL5_ARATH3.847e-6764.80Patellin-5 OS=Arabidopsis thaliana GN=PATL5 PE=1 S... [more]
PATL3_ARATH5.749e-6360.20Patellin-3 OS=Arabidopsis thaliana GN=PATL3 PE=1 S... [more]
PATL1_ARATH6.807e-5654.69Patellin-1 OS=Arabidopsis thaliana GN=PATL1 PE=1 S... [more]
PATL2_ARATH5.393e-5353.40Patellin-2 OS=Arabidopsis thaliana GN=PATL2 PE=1 S... [more]
PATL4_ARATH8.611e-5151.58Patellin-4 OS=Arabidopsis thaliana GN=PATL4 PE=1 S... [more]
PATL6_ARATH1.378e-4044.33Patellin-6 OS=Arabidopsis thaliana GN=PATL6 PE=2 S... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS09_9A08_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-9A08-A16-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX053912 ID=CX053912; Name=CX053912; organism=Citrus sinensis; type=EST; length=835bp
TTTTTTTTTTTTCCAGACAAACAAACAAATTGAAATTTTATATAGCAAGA
AATACTTCTTAACAAGTTCTGTAAAGAACCGCTCAAAAAAAGATATAATT
TAACAGATATAATAAGAAGCAAATCCACGAACAATTTCAAGTTTTCGACC
TCTCTTTCTTTATCAACGAAAATTAGGCACAACATAATTCGTCCTTGAAG
CTTTGATGGCCAGAAGAAGGCTTGGTCTTCAAACGATAACGATAGAGGAG
CTTCTTCTTCTTAGAGGTCGGATTGTCAATGGTGAGAACAACTTTGCCTG
GTTCAACAATCTTGAAACTGTCACATACCACAGGCTGTTCAGCATTTGAG
GCCAATTTTTTAGCCTTTTGGATTATCACCGTGTAGCTTCCTTCAGTACT
TGGCACAAACTCTGCCCCATAGCTCACTTCCCATCCCACTACCCGCACTT
CCCAGGTCAAATGGCATTCCTCAGTAACTGGAAATTCAACAGTGTGCTTA
GCTGCTGGCTTGACGGTGATCTCAGTAACTGCATCTGTGGCAGCAAATTC
ACCTACTTTGCTCAGCCCGCCATATTTTACTGGTAGTTGCTCAGCTGCTA
TGTACCTTAGAAGGGTCTCTGCGGATTTGGATGGACCAGCAAAGACAAAC
TTGCTTCTAGTTCTCTGAGTCAAAAATGGGCTTATCATCCTGTTAACTGC
CAGGTACCACCATGGTACATTGATAAACACCTGTTTAGCAACAAACTCAG
GGTAATTGTCCTGGAGCAACTGAAGGGCCTGTTTGGTAGCTTGTCTAAGC
TCCCACTTAGCAGGTCCTGGAGAATTCTTCAAGTC
back to top