DR403715

Overview
NameDR403715
Unique NameDR403715
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length635
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DR403715_ssr253 microsatellite DR403715_ssr253:253..267. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9675 contig Csv1_Contig9675:4..639. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403715 vs. ExPASy Swiss-Prot
Match: ELI_PEA (Early light-induced protein, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.034e-46
Identity = 104/166 (62.65%), Postives = 122/166 (73.49%), Query Frame = 3
Query:  162 RSGANQLSSVK--YLPSLRRNVNLSVRCTAXXXXXXXXXXXX-PTIPKAE---PQPP--KKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALA 635
            RS  NQ +++   Y+P+LRRNV+L VR  A             PT P A    PQP   + P+MST FS++ AFSGPAPERINGRLAMIGFVAA+GVEI+KGQ +  QLS GGVAWFLGTSVLL++ASL+P F+GVSVESKS   M+SDAE WNGR AMLGLVALA
Sbjct:   20 RSRVNQFTNIPSVYIPTLRRNVSLKVRSMAEGEPKEQSKVAVDPTTPTASTPTPQPAYTRPPKMSTKFSDLMAFSGPAPERINGRLAMIGFVAAMGVEIAKGQGLSEQLSGGGVAWFLGTSVLLSLASLIPFFQGVSVESKSKSIMSSDAEFWNGRIAMLGLVALA 185          
BLAST of DR403715 vs. ExPASy Swiss-Prot
Match: DS22_CRAPL (Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum GN=DSP-22 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.216e-32
Identity = 78/166 (46.99%), Postives = 107/166 (64.46%), Query Frame = 3
Query:  156 IRRSGANQLSSVKY---LPSLRRNVNLSVRCTAXXXXXXXXXXXXP--TIPKAEPQPPKKPRMSTGFS-EVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALA 635
            I R G N L   K    LP +RRN   +VR                  T        P +  ++T  + ++F+F G APERINGR AMIGFVAA+GVE++ G+DVF+Q+ +GGV WFL TS +L +A+L+P+++G+S E+K++GF  SDAE+WNGRFAM+GLVALA
Sbjct:   21 ITRFGPNNLFLGKQSYELPLMRRNAKFTVRSMREDNEKEEQQQQKQQQTHDGGPDLTPNRTEVTTKRTVDLFSFDGLAPERINGRSAMIGFVAAVGVELATGRDVFSQVFNGGVMWFLLTSAVLVLATLIPIYRGLSPEAKNNGFWNSDAEIWNGRFAMIGLVALA 186          
BLAST of DR403715 vs. ExPASy Swiss-Prot
Match: ELI6_HORVU (Low molecular mass early light-inducible protein HV60, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.021e-30
Identity = 65/110 (59.09%), Postives = 80/110 (72.73%), Query Frame = 3
Query:  309 PPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDG-GVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALA 635
            PP KP+ ST   +  AFSGPAPERINGRLAM+GFV AL VE  +G  + +QL  G G AWF  T  +L++ASLVPL +G S E ++   M ++AELWNGRFAM+GLVALA
Sbjct:   45 PPNKPKASTSIWDAMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAMLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMIGLVALA 154          
BLAST of DR403715 vs. ExPASy Swiss-Prot
Match: ELI9_HORVU (Low molecular mass early light-inducible protein HV90, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.946e-30
Identity = 66/110 (60.00%), Postives = 80/110 (72.73%), Query Frame = 3
Query:  309 PPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDG-GVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALA 635
            PP KP+ ST   +  AFSGPAPERINGRLAM+GFV AL VE  +G  + +QL  G G AWF  T  +L++ASLVPL +G S E ++   M ++AELWNGRFAMLGLVALA
Sbjct:   50 PPNKPKASTSIWDEMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAVLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMLGLVALA 159          
BLAST of DR403715 vs. ExPASy Swiss-Prot
Match: ELI5_HORVU (High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.153e-30
Identity = 70/120 (58.33%), Postives = 87/120 (72.50%), Query Frame = 3
Query:  282 PTIPKAEPQPPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLS--DGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALA 635
            PT   A P+P  K + +    +  AFSGPAPERINGRLAM+GFVAAL VE ++G  +  Q+     G+AWFL T+ + +VASL+PL +G SVESKS G  ++DAELWNGRFAMLGLVALA
Sbjct:  100 PTTIPAAPKPVTK-KANPSVWDALAFSGPAPERINGRLAMVGFVAALSVEAARGGGLLDQVGMWSSGLAWFLATAGVFSVASLLPLLQGQSVESKSSGIWSADAELWNGRFAMLGLVALA 218          
BLAST of DR403715 vs. ExPASy Swiss-Prot
Match: CBR_DUNBA (Carotene biosynthesis-related protein CBR, chloroplastic OS=Dunaliella bardawil GN=CBR PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.317e-17
Identity = 59/120 (49.17%), Postives = 69/120 (57.50%), Query Frame = 3
Query:  285 TIPKAEPQPPKKPRMSTG--FSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSD--GFMTSDAELWNGRFAMLGLVAL 632
            T P + P PP  P        +EV  FSG APE INGRLAM+GFVAALG E+S G+ V  QL D      L T VL + ASL+P F       K D  G  T DAE+ NGRFAM+G  A+
Sbjct:   47 TPPPSSPSPPPPPPTPAAPTVTEVMGFSG-APEIINGRLAMLGFVAALGAELSTGESVLTQLGDQPTLIAL-TFVLFSAASLIPAF----ARRKGDAMGPFTPDAEMTNGRFAMIGFAAM 160          
The following BLAST results are available for this feature:
BLAST of DR403715 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
ELI_PEA1.034e-4662.65Early light-induced protein, chloroplastic OS=Pisu... [more]
DS22_CRAPL4.216e-3246.99Desiccation stress protein DSP-22, chloroplastic O... [more]
ELI6_HORVU3.021e-3059.09Low molecular mass early light-inducible protein H... [more]
ELI9_HORVU3.946e-3060.00Low molecular mass early light-inducible protein H... [more]
ELI5_HORVU5.153e-3058.33High molecular mass early light-inducible protein ... [more]
CBR_DUNBA1.317e-1749.17Carotene biosynthesis-related protein CBR, chlorop... [more]
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Properties
Property NameValue
Genbank descriptionCSAH-PNP1246A22 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone CSAH-PNP1246A22 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403715 ID=DR403715; Name=DR403715; organism=Citrus sinensis; type=EST; length=635bp
GGGGTCAAGAAATTNNNNNNAAGGAACCCGCCGACCTGAAGCACCCAATT
CCCGAATTATACTTTGTTCTGTTTTCTACTTCATAAATTAAAAATGGCCG
CATCACTGCTACTCAATCTATGCTGGCAAGTCCTGTAGCAGCTCGTGTGA
CTGGTATCAGGAGATCCGGGGCAAACCAACTTTCCTCCGTCAAGTACTTG
CCTAGTCTGCGTAGAAATGTCAACTTATCCGTGCGCTGCACGGCAGAGGA
TGAGCAGCAGCAGCAGCAGAAAGATGATCAACCAACCATACCGAAAGCTG
AGCCTCAGCCACCAAAGAAGCCGCGGATGAGCACGGGGTTCTCTGAGGTG
TTCGCGTTCAGCGGGCCGGCACCGGAGAGGATAAACGGGAGGCTTGCGAT
GATTGGGTTCGTGGCAGCATTGGGGGTGGAGATATCCAAGGGTCAGGATG
TGTTTGCCCAGTTATCAGACGGTGGGGTTGCCTGGTTCTTGGGGACCAGT
GTTTTGCTCACGGTTGCGTCCCTGGTTCCTTTGTTTAAAGGTGTCAGCGT
GGAGTCTAAATCGGATGGGTTCATGACTTCGGATGCTGAGTTGTGGAATG
GGAGGTTTGCTATGCTGGGCCTTGTTGCTTTGGCT
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