EY693131

Overview
NameEY693131
Unique NameEY693131
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length479
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY693131 vs. ExPASy Swiss-Prot
Match: RER1A_ARATH (Protein RER1A OS=Arabidopsis thaliana GN=RER1A PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.246e-14
Identity = 34/36 (94.44%), Postives = 36/36 (100.00%), Query Frame = 1
Query:   13 VPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPFN 120
            VPVFWPILLCYWIVLFVLTMRRQIAHMIKY+YIPF+
Sbjct:  139 VPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPFS 174          
BLAST of EY693131 vs. ExPASy Swiss-Prot
Match: RER1B_ARATH (Protein RER1B OS=Arabidopsis thaliana GN=RER1B PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 2.126e-14
Identity = 33/37 (89.19%), Postives = 37/37 (100.00%), Query Frame = 1
Query:   13 VPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPFNI 123
            VPVFWPILLCYW+VLFVLTMRRQIAHMIK++YIPF+I
Sbjct:  138 VPVFWPILLCYWVVLFVLTMRRQIAHMIKHKYIPFSI 174          
BLAST of EY693131 vs. ExPASy Swiss-Prot
Match: RER1C_ARATH (Protein RER1C OS=Arabidopsis thaliana GN=RER1C PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.290e-11
Identity = 28/36 (77.78%), Postives = 33/36 (91.67%), Query Frame = 1
Query:   13 VPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPFN 120
            VPVFWPILL YW++LF LTMR+QI HMIKYRY+PF+
Sbjct:  160 VPVFWPILLFYWVMLFFLTMRKQIQHMIKYRYVPFS 195          
BLAST of EY693131 vs. ExPASy Swiss-Prot
Match: RER1_YEAST (Protein RER1 OS=Saccharomyces cerevisiae GN=RER1 PE=1 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 8.359e-11
Identity = 29/37 (78.38%), Postives = 33/37 (89.19%), Query Frame = 1
Query:   13 VPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPFNI 123
            +PVFWPILL Y+I+LF LTMRRQI HMIKYRYIP +I
Sbjct:  142 IPVFWPILLMYFILLFFLTMRRQIQHMIKYRYIPLDI 178          
The following BLAST results are available for this feature:
BLAST of EY693131 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RER1A_ARATH1.246e-1494.44Protein RER1A OS=Arabidopsis thaliana GN=RER1A PE=... [more]
RER1B_ARATH2.126e-1489.19Protein RER1B OS=Arabidopsis thaliana GN=RER1B PE=... [more]
RER1C_ARATH1.290e-1177.78Protein RER1C OS=Arabidopsis thaliana GN=RER1C PE=... [more]
RER1_YEAST8.359e-1178.38Protein RER1 OS=Saccharomyces cerevisiae GN=RER1 P... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-700-008-B07-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY693131 ID=EY693131; Name=EY693131; organism=Citrus sinensis; type=EST; length=479bp
CCACGCGTCCGTGTTCCTGTGTTTTGGCCTATATTACTTTGTTACTGGAT
TGTTCTGTTTGTTCTTACAATGAGACGCCAAATCGCACACATGATCAAAT
ACAGATATATCCCGTTCAACATTGGAAAACAGAAGTATGGTGGTAAGAAA
CCTTCATCAAGTGGCGGTGGCTCCCGTGGGGACTGAAGCAGAACTTATTC
ACAGAGCCAGTAGAAAAAGGACTGGATGGGGATAAAAAAATAGGTTATGG
GAAGATATTATAATTGAATTTTTTCCTTTCAAGGGACATGCACTTGGTTA
TTATGAATGAAGCTTATAGTAGACATAAAGTTCAATAGTGCGGGATTGCT
AAAATGTTGCAGAATTGAAACTTTAATGTTTACGCTCATGTTATGAAGAT
TCCAAGATTGTTGGCAATGTAATTGCATGACCCATTATAACAAAGATTTT
ACGGGAAAAAAAAAAAAAAAAAAAAAAAA
back to top