DR403659

Overview
NameDR403659
Unique NameDR403659
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length520
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403659 vs. ExPASy Swiss-Prot
Match: LIPA_NATPD (Probable lipoyl synthase OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=lipA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 7.550e-14
Identity = 33/53 (62.26%), Postives = 41/53 (77.36%), Query Frame = 1
Query:  319 KKPEWLRQKAPQGQRFQEVKESLSSLKLNTVCEEAQCPNIGECWNG--GWGTA 471
            +KPEWLR + P G+RF E+KE+L    LNTVCEEA CPN+G+CW+G  G GTA
Sbjct:    6 RKPEWLRTRPPSGRRFTEIKETLRDRDLNTVCEEANCPNLGDCWSGRDGPGTA 58          
BLAST of DR403659 vs. ExPASy Swiss-Prot
Match: LIPA_CHRVO (Lipoyl synthase OS=Chromobacterium violaceum GN=lipA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 7.550e-14
Identity = 33/54 (61.11%), Postives = 40/54 (74.07%), Query Frame = 1
Query:  307 DPDVKKPEWLRQKAPQGQRFQEVKESLSSLKLNTVCEEAQCPNIGECWNGGWGT 468
            D  +KKPEW+R K P GQRF E+K+ L   KL+TVCEEA CPNIGEC++ G  T
Sbjct:   28 DEKLKKPEWIRAKLPNGQRFHEIKQILREQKLHTVCEEATCPNIGECFSKGTAT 81          
BLAST of DR403659 vs. ExPASy Swiss-Prot
Match: LIPA_ANADE (Lipoyl synthase OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=lipA PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 7.550e-14
Identity = 30/54 (55.56%), Postives = 39/54 (72.22%), Query Frame = 1
Query:  313 DVKKPEWLRQKAPQGQRFQEVKESLSSLKLNTVCEEAQCPNIGECWNGGWGTAL 474
            D KKP WLR   P G+R+Q+V+E+L  L+L+TVC EA CPN+ ECW GG  T +
Sbjct:    2 DAKKPSWLRVNVPGGERYQKVRETLKGLQLHTVCAEAHCPNVAECWGGGTATVM 55          
BLAST of DR403659 vs. ExPASy Swiss-Prot
Match: LIPA_LARHH (Lipoyl synthase OS=Laribacter hongkongensis (strain HLHK9) GN=lipA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.747e-13
Identity = 32/51 (62.75%), Postives = 40/51 (78.43%), Query Frame = 1
Query:  316 VKKPEWLRQKAPQGQRFQEVKESLSSLKLNTVCEEAQCPNIGECWNGGWGT 468
            ++KPEW+R K P GQRF E+KE L + KL+TVCEEA CPNIGEC++ G  T
Sbjct:   31 LRKPEWIRAKLPTGQRFFEIKEILRNQKLHTVCEEASCPNIGECFSHGTAT 81          
BLAST of DR403659 vs. ExPASy Swiss-Prot
Match: LIPA_METFK (Lipoyl synthase OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=lipA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.893e-13
Identity = 31/57 (54.39%), Postives = 41/57 (71.93%), Query Frame = 1
Query:  310 PDVKKPEWLRQKAPQGQRFQEVKESLSSLKLNTVCEEAQCPNIGECWNGGWGTALQL 480
            P ++KPEW+R K P   RF+E+K+ L    L+TVCEEA CPNIGEC++GG  T + L
Sbjct:   37 PAMRKPEWIRMKVPDSARFREIKQVLRENNLHTVCEEASCPNIGECFSGGTATFMIL 93          
BLAST of DR403659 vs. ExPASy Swiss-Prot
Match: LIPA1_THEEB (Lipoyl synthase 1 OS=Thermosynechococcus elongatus (strain BP-1) GN=lipA1 PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 4.893e-13
Identity = 36/55 (65.45%), Postives = 38/55 (69.09%), Query Frame = 1
Query:  316 VKKPEWLRQKAPQGQRFQEVKESLSSLKLNTVCEEAQCPNIGECWNGGWGTALQL 480
            V KPEWLR KAPQ QR   VKE L  L LNTVCEEA CPNIGEC+  G  T L +
Sbjct:    2 VVKPEWLRVKAPQWQRVGSVKELLRDLNLNTVCEEASCPNIGECFYQGTATFLMM 56          
BLAST of DR403659 vs. ExPASy Swiss-Prot
Match: LIPA_HALSA (Probable lipoyl synthase OS=Halobacterium salinarium GN=lipA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.391e-13
Identity = 31/53 (58.49%), Postives = 41/53 (77.36%), Query Frame = 1
Query:  319 KKPEWLRQKAPQGQRFQEVKESLSSLKLNTVCEEAQCPNIGECWNG--GWGTA 471
            +KPEWL+ + P G+RF ++KE+L    L+TVCEEA CPN+GECW+G  G GTA
Sbjct:    5 RKPEWLKMRPPSGERFTDIKETLRDNDLHTVCEEASCPNMGECWSGRDGPGTA 57          
BLAST of DR403659 vs. ExPASy Swiss-Prot
Match: LIPA_HALS3 (Probable lipoyl synthase OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=lipA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.391e-13
Identity = 31/53 (58.49%), Postives = 41/53 (77.36%), Query Frame = 1
Query:  319 KKPEWLRQKAPQGQRFQEVKESLSSLKLNTVCEEAQCPNIGECWNG--GWGTA 471
            +KPEWL+ + P G+RF ++KE+L    L+TVCEEA CPN+GECW+G  G GTA
Sbjct:    5 RKPEWLKMRPPSGERFTDIKETLRDNDLHTVCEEASCPNMGECWSGRDGPGTA 57          
BLAST of DR403659 vs. ExPASy Swiss-Prot
Match: LIPA_PARDP (Lipoyl synthase OS=Paracoccus denitrificans (strain Pd 1222) GN=lipA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.347e-13
Identity = 31/71 (43.66%), Postives = 44/71 (61.97%), Query Frame = 1
Query:  262 MKPPQRQQMGLHTGRDPDVKKPEWLRQKAPQGQRFQEVKESLSSLKLNTVCEEAQCPNIGECWNGGWGTAL 474
            M P  R     H    P  KKP+W+R KAP  Q +++ ++ L + +L+TVCEEA CPN+GECW+ G  T +
Sbjct:    4 MPPVLRHPEKAHRPDQPQPKKPDWIRVKAPTSQGYKDTRDILRNNRLSTVCEEAGCPNVGECWSQGHATMM 74          
BLAST of DR403659 vs. ExPASy Swiss-Prot
Match: LIPA_HALLT (Probable lipoyl synthase OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=lipA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.424e-12
Identity = 31/53 (58.49%), Postives = 39/53 (73.58%), Query Frame = 1
Query:  319 KKPEWLRQKAPQGQRFQEVKESLSSLKLNTVCEEAQCPNIGECWNG--GWGTA 471
            +KP+WL+ + P G RF E+KE L    L+TVCEEA CPN+GECW+G  G GTA
Sbjct:    6 RKPDWLKSRPPSGSRFTEIKERLRERDLHTVCEEANCPNMGECWSGRDGPGTA 58          
The following BLAST results are available for this feature:
BLAST of DR403659 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
LIPA_NATPD7.550e-1462.26Probable lipoyl synthase OS=Natronomonas pharaonis... [more]
LIPA_CHRVO7.550e-1461.11Lipoyl synthase OS=Chromobacterium violaceum GN=li... [more]
LIPA_ANADE7.550e-1455.56Lipoyl synthase OS=Anaeromyxobacter dehalogenans (... [more]
LIPA_LARHH3.747e-1362.75Lipoyl synthase OS=Laribacter hongkongensis (strai... [more]
LIPA_METFK4.893e-1354.39Lipoyl synthase OS=Methylobacillus flagellatus (st... [more]
LIPA1_THEEB4.893e-1365.45Lipoyl synthase 1 OS=Thermosynechococcus elongatus... [more]
LIPA_HALSA6.391e-1358.49Probable lipoyl synthase OS=Halobacterium salinari... [more]
LIPA_HALS36.391e-1358.49Probable lipoyl synthase OS=Halobacterium salinaru... [more]
LIPA_PARDP8.347e-1343.66Lipoyl synthase OS=Paracoccus denitrificans (strai... [more]
LIPA_HALLT1.424e-1258.49Probable lipoyl synthase OS=Halorubrum lacusprofun... [more]

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Properties
Property NameValue
Genbank descriptionCSAC-PNP1241N15 Mature Albedo Citrus sinensis cDNA clone CSAC-PNP1241N15 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403659 ID=DR403659; Name=DR403659; organism=Citrus sinensis; type=EST; length=520bp
GGGGAAACAGCTATCGACTGAATTGAATTCCAGGCGGAGAAATCGAAGCC
CACGACGCTGAACTAACGCTTACAAAAAAGGGGGAAAATTGAGAAACCAA
ACTTTATTATAAACGAGCTTGAAAATTTTAGCATTTTGTTTCCACAGCCA
GAAAACGAAAACAGCAGAATGATTCATCAAGCGATTTGGAAACCTTCAAA
TTCAATTTCATATTCAATCCCGTCGAAAATCCGGTGCGAGTCAAGAACTG
ACACGGTGAAGATGAAGCCACCACAAAGACAACAAATGGGTCTGCACACG
GGGAGAGATCCGGATGTGAAGAAGCCGGAGTGGCTGAGACAGAAAGCTCC
ACAAGGTCAGAGGTTTCAAGAAGTTAAAGAATCTCTTTCCTCATTGAAAC
TCAACACTGTTTGCGAGGAGGCCCAGTGCCCCAATATTGGAGAGTGTTGG
AATGGAGGGTGGGGGACGGCATTGCAACTGCAACGATCATNNNNCTTGNN
GNNACCTGNNNCCGCGGCTG
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