EY720317

Overview
NameEY720317
Unique NameEY720317
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length849
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9875 contig Csv1_Contig9875:1269..2118. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY720317 vs. ExPASy Swiss-Prot
Match: DRTS_SOYBN (Bifunctional dihydrofolate reductase-thymidylate synthase OS=Glycine max PE=1 SV=1)

HSP 1 Score: 412.149 bits (1058), Expect = 1.910e-114
Identity = 190/215 (88.37%), Postives = 204/215 (94.88%), Query Frame = 3
Query:   12 RVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPFDLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVSEDFKLIGYDPHQKIEMKMAV 656
            +VLQEK IHIWDGNASREYLD VGLT+REEGDLGPVYGFQWRHFGARYT+MH DYSGQGFDQLLDVINKIK NP+DRRI+LSAWNP DLKLMALPPCHMFAQFYVA+GELSCQMYQRSADMGLG+PFNIASYALLTCMIAHVCDL PGDFIHVIGDAH+YRNHVRPL+EQL   PKPFP LKINP+KKDIDSFV+ DFKLIGYDPHQKI+MK++V
Sbjct:  316 KVLQEKGIHIWDGNASREYLDGVGLTEREEGDLGPVYGFQWRHFGARYTDMHHDYSGQGFDQLLDVINKIKRNPDDRRIILSAWNPVDLKLMALPPCHMFAQFYVAHGELSCQMYQRSADMGLGIPFNIASYALLTCMIAHVCDLIPGDFIHVIGDAHIYRNHVRPLQEQLHNQPKPFPTLKINPKKKDIDSFVAADFKLIGYDPHQKIDMKLSV 530          
BLAST of EY720317 vs. ExPASy Swiss-Prot
Match: DRTS2_ARATH (Bifunctional dihydrofolate reductase-thymidylate synthase 2 OS=Arabidopsis thaliana GN=THY-2 PE=2 SV=2)

HSP 1 Score: 409.838 bits (1052), Expect = 9.477e-114
Identity = 186/215 (86.51%), Postives = 207/215 (96.28%), Query Frame = 3
Query:   12 RVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPFDLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVSEDFKLIGYDPHQKIEMKMAV 656
            +VLQEK I IWDGNASR YLD +GLT+REEGDLGPVYGFQWRHFGA+YT+MHADY+GQGFDQLLDVINKIKNNP+DRRI++SAWNP DLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIASY+LLTC++AHVCDL PGDFIHVIGDAHVY+NHVRPL+EQL+  PKPFP+LKINPEKKDIDSFV++DF+LIGYDPH+KI+MKMAV
Sbjct:  351 KVLQEKGIRIWDGNASRAYLDGIGLTEREEGDLGPVYGFQWRHFGAKYTDMHADYTGQGFDQLLDVINKIKNNPDDRRIIMSAWNPSDLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIASYSLLTCILAHVCDLVPGDFIHVIGDAHVYKNHVRPLQEQLENPPKPFPVLKINPEKKDIDSFVADDFELIGYDPHKKIDMKMAV 565          
BLAST of EY720317 vs. ExPASy Swiss-Prot
Match: DRTS1_ARATH (Bifunctional dihydrofolate reductase-thymidylate synthase 1 OS=Arabidopsis thaliana GN=THY-1 PE=2 SV=2)

HSP 1 Score: 404.06 bits (1037), Expect = 5.200e-112
Identity = 183/215 (85.12%), Postives = 203/215 (94.42%), Query Frame = 3
Query:   12 RVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPFDLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVSEDFKLIGYDPHQKIEMKMAV 656
            +VLQEK IHIWDGNASREYLD +GLT+REEGDLGPVYGFQWRHFGA+YT+MHADY+GQGFDQL+DVI+KIKNNP+DRRI++SAWNP DLKLMALPPCHMFAQFYVA GELSCQMYQRSADMGLGVPFNIASY+LLTCM+AHVCDL PGDFIHV+GDAHVY+ HVRPL+EQL  LPKPFP++KINPEKK IDSFV+ DF L GYDPH+KIEMKMAV
Sbjct:  305 KVLQEKGIHIWDGNASREYLDGIGLTEREEGDLGPVYGFQWRHFGAKYTDMHADYTGQGFDQLVDVIDKIKNNPDDRRIIMSAWNPSDLKLMALPPCHMFAQFYVAEGELSCQMYQRSADMGLGVPFNIASYSLLTCMLAHVCDLVPGDFIHVLGDAHVYKTHVRPLQEQLLNLPKPFPVMKINPEKKQIDSFVASDFDLTGYDPHKKIEMKMAV 519          
BLAST of EY720317 vs. ExPASy Swiss-Prot
Match: DRTS_MAIZE (Bifunctional dihydrofolate reductase-thymidylate synthase OS=Zea mays GN=DRTS PE=2 SV=1)

HSP 1 Score: 399.823 bits (1026), Expect = 9.807e-111
Identity = 184/215 (85.58%), Postives = 202/215 (93.95%), Query Frame = 3
Query:   12 RVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPFDLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVSEDFKLIGYDPHQKIEMKMAV 656
            +VLQEK IHIWDGNASREYL+SVGL  REEGDLGP+YGFQWRHFGA YT+MHADY+G+GFDQL+DVI+KIKN+P DRRI+LSAWNP DLK MALPPCHMFAQFYV NGELSCQMYQRSADMGLGVPFNIASY+LLT MIA VCDL+PGDF+HVIGDAHVYRNHVR LEEQ+QK+PKPFPILKINP KKDIDSF++ DFKL+GYDPHQKIEMKMAV
Sbjct:  307 KVLQEKGIHIWDGNASREYLNSVGLAHREEGDLGPIYGFQWRHFGAEYTDMHADYTGKGFDQLMDVIDKIKNDPEDRRIILSAWNPSDLKKMALPPCHMFAQFYVENGELSCQMYQRSADMGLGVPFNIASYSLLTYMIAQVCDLSPGDFVHVIGDAHVYRNHVRALEEQIQKMPKPFPILKINPSKKDIDSFMASDFKLVGYDPHQKIEMKMAV 521          
BLAST of EY720317 vs. ExPASy Swiss-Prot
Match: DRTS_ORYSJ (Putative bifunctional dihydrofolate reductase-thymidylate synthase OS=Oryza sativa subsp. japonica GN=Os12g0446900 PE=3 SV=2)

HSP 1 Score: 396.356 bits (1017), Expect = 1.084e-109
Identity = 183/215 (85.12%), Postives = 199/215 (92.56%), Query Frame = 3
Query:   12 RVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPFDLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVSEDFKLIGYDPHQKIEMKMAV 656
            +VLQEK IHIWDGNASR+YLDS+GLT REEGDLGPVYGFQWRHFGA YT+MHADY G+GFDQL+DVI+KIKNNP+DRRI+LSAWNP DLK MALPPCHMFAQFYV NGELSCQMYQRSADMGLGVPFNIASY+LLTCMIA VCDL+PGDF+HVIGDAHVYR HV  LEEQ++K PKPFPILKINP KKDIDSFV+ DFKL+ YDPH KIEMKMAV
Sbjct:  280 KVLQEKGIHIWDGNASRQYLDSIGLTQREEGDLGPVYGFQWRHFGAEYTDMHADYVGKGFDQLMDVIDKIKNNPDDRRIILSAWNPTDLKKMALPPCHMFAQFYVENGELSCQMYQRSADMGLGVPFNIASYSLLTCMIAQVCDLSPGDFVHVIGDAHVYRTHVEALEEQMRKQPKPFPILKINPVKKDIDSFVTSDFKLVRYDPHHKIEMKMAV 494          
BLAST of EY720317 vs. ExPASy Swiss-Prot
Match: DRTS_DAUCA (Bifunctional dihydrofolate reductase-thymidylate synthase OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 382.489 bits (981), Expect = 1.620e-105
Identity = 177/216 (81.94%), Postives = 197/216 (91.20%), Query Frame = 3
Query:   12 RVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPFDLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPL-EEQLQKLPKPFPILKINPEKKDIDSFVSEDFKLIGYDPHQKIEMKMAV 656
            ++L+EK ++IW+GN SREYLDS+GLTDREEGDLGP+YGFQWRHFGARYT+MHADYSGQGFDQLLDVI+KIKNNP+DRRI+ SAWNP DL+LMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIA+YALLTCMIAHVCDL PGDF+H IGDAHVY NH+  L E   + LPK FP+LKIN  +KDIDSF + DFKLIGYDPHQKIEMKMAV
Sbjct:  313 KILKEKGVNIWEGNGSREYLDSIGLTDREEGDLGPIYGFQWRHFGARYTDMHADYSGQGFDQLLDVISKIKNNPDDRRIIQSAWNPSDLRLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIAAYALLTCMIAHVCDLVPGDFVHSIGDAHVYSNHLSDLFETSFRMLPKTFPVLKINSGEKDIDSFEAADFKLIGYDPHQKIEMKMAV 528          
BLAST of EY720317 vs. ExPASy Swiss-Prot
Match: TYSY_DROME (Thymidylate synthase OS=Drosophila melanogaster GN=Ts PE=1 SV=2)

HSP 1 Score: 310.457 bits (794), Expect = 7.825e-84
Identity = 143/217 (65.90%), Postives = 174/217 (80.18%), Query Frame = 3
Query:   12 RVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPFDLKLMALPPCHMFAQFYVA--NGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVSEDFKLIGYDPHQKIEMKMAV 656
            ++LQ K++HIWDGN+SRE+LD +G T R  GDLGPVYGFQWRHFGA+Y     DYSG+G DQL  VI+ I+NNP+DRRI++SAWNP D+  MALPPCH  AQFYV+   GELSCQ+YQRSADMGLGVPFNIASYALLT MIAHV  L PGDF+H +GD HVY NHV PL+EQL++ P+PFP L I  + +DI+ F  EDF+++ Y+PH KI+M MAV
Sbjct:  105 KLLQAKNVHIWDGNSSREFLDKMGFTGRAVGDLGPVYGFQWRHFGAQYGTCDDDYSGKGIDQLRQVIDTIRNNPSDRRIIMSAWNPLDIPKMALPPCHCLAQFYVSEKRGELSCQLYQRSADMGLGVPFNIASYALLTHMIAHVTGLKPGDFVHTMGDTHVYLNHVEPLKEQLERTPRPFPKLIIKRQVQDIEDFRFEDFQIVDYNPHPKIQMDMAV 321          
BLAST of EY720317 vs. ExPASy Swiss-Prot
Match: TYSY_PNECA (Thymidylate synthase OS=Pneumocystis carinii GN=THYA PE=1 SV=1)

HSP 1 Score: 309.686 bits (792), Expect = 1.335e-83
Identity = 139/219 (63.47%), Postives = 172/219 (78.54%), Query Frame = 3
Query:   18 LQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPFDLKLMALPPCHMFAQFYV------ANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVSEDFKLIGYDPHQKIEMKMAV 656
            L+EK+IHIWD N SREYLDS+GLT R+EGDLGP+YGFQWRHFGA Y +   +Y GQG DQL ++I KI+ +P DRR++LSAWNP DL+ MALPPCHMF QFYV         ELSCQ+YQRS DMGLGVPFNIASYALLTCMIAHVCDL PGDFIHV+GD H+Y++H+  L++QL + P+PFP L +N    DI+ F  +DF +  Y P++ I+MKM++
Sbjct:   79 LREKNIHIWDANGSREYLDSIGLTKRQEGDLGPIYGFQWRHFGAEYIDCKTNYIGQGVDQLANIIQKIRTSPYDRRLILSAWNPADLEKMALPPCHMFCQFYVHIPSNNHRPELSCQLYQRSCDMGLGVPFNIASYALLTCMIAHVCDLDPGDFIHVMGDCHIYKDHIEALQQQLTRSPRPFPTLSLNRSITDIEDFTLDDFNIQNYHPYETIKMKMSI 297          
BLAST of EY720317 vs. ExPASy Swiss-Prot
Match: TYSY_MOUSE (Thymidylate synthase OS=Mus musculus GN=Tyms PE=2 SV=1)

HSP 1 Score: 308.531 bits (789), Expect = 2.973e-83
Identity = 141/213 (66.20%), Postives = 169/213 (79.34%), Query Frame = 3
Query:   18 LQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPFDLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVSEDFKLIGYDPHQKIEMKMAV 656
            L  K + IWD N SR++LDS+G + R+EGDLGPVYGFQWRHFGA Y +M +DYSGQG DQL  VI+ IK NP+DRRI++ AWNP DL LMALPPCH   QFYV NGELSCQ+YQRS DMGLGVPFNIASYALLT MIAH+  L PGDF+H +GDAH+Y NH+ PL+ QLQ+ P+PFP LKI  + + ID F  EDF++ GY+PH  I+M+MAV
Sbjct:   95 LSSKGVRIWDANGSRDFLDSLGFSARQEGDLGPVYGFQWRHFGAEYKDMDSDYSGQGVDQLQKVIDTIKTNPDDRRIIMCAWNPKDLPLMALPPCHALCQFYVVNGELSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLQPGDFVHTLGDAHIYLNHIEPLKIQLQREPRPFPKLKILRKVETIDDFKVEDFQIEGYNPHPTIKMEMAV 307          
BLAST of EY720317 vs. ExPASy Swiss-Prot
Match: TYSY_HUMAN (Thymidylate synthase OS=Homo sapiens GN=TYMS PE=1 SV=3)

HSP 1 Score: 307.76 bits (787), Expect = 5.072e-83
Identity = 141/213 (66.20%), Postives = 169/213 (79.34%), Query Frame = 3
Query:   18 LQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPFDLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVSEDFKLIGYDPHQKIEMKMAV 656
            L  K + IWD N SR++LDS+G + REEGDLGPVYGFQWRHFGA Y +M +DYSGQG DQL  VI+ IK NP+DRRI++ AWNP DL LMALPPCH   QFYV N ELSCQ+YQRS DMGLGVPFNIASYALLT MIAH+  L PGDFIH +GDAH+Y NH+ PL+ QLQ+ P+PFP L+I  + + ID F +EDF++ GY+PH  I+M+MAV
Sbjct:  101 LSSKGVKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYRDMESDYSGQGVDQLQRVIDTIKTNPDDRRIIMCAWNPRDLPLMALPPCHALCQFYVVNSELSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKIQLQREPRPFPKLRILRKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 313          
The following BLAST results are available for this feature:
BLAST of EY720317 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 407
Match NameE-valueIdentityDescription
DRTS_SOYBN1.910e-11488.37Bifunctional dihydrofolate reductase-thymidylate s... [more]
DRTS2_ARATH9.477e-11486.51Bifunctional dihydrofolate reductase-thymidylate s... [more]
DRTS1_ARATH5.200e-11285.12Bifunctional dihydrofolate reductase-thymidylate s... [more]
DRTS_MAIZE9.807e-11185.58Bifunctional dihydrofolate reductase-thymidylate s... [more]
DRTS_ORYSJ1.084e-10985.12Putative bifunctional dihydrofolate reductase-thym... [more]
DRTS_DAUCA1.620e-10581.94Bifunctional dihydrofolate reductase-thymidylate s... [more]
TYSY_DROME7.825e-8465.90Thymidylate synthase OS=Drosophila melanogaster GN... [more]
TYSY_PNECA1.335e-8363.47Thymidylate synthase OS=Pneumocystis carinii GN=TH... [more]
TYSY_MOUSE2.973e-8366.20Thymidylate synthase OS=Mus musculus GN=Tyms PE=2 ... [more]
TYSY_HUMAN5.072e-8366.20Thymidylate synthase OS=Homo sapiens GN=TYMS PE=1 ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-703-004-G08-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720317 ID=EY720317; Name=EY720317; organism=Citrus sinensis; type=EST; length=849bp
CACCACGCGTCCGGGTTCTTCAGGAAAAGGATATTCATATATGGGATGGC
AATGCATCCAGGGAATATCTTGATAGTGTTGGTTTGACGGACAGAGAGGA
GGGTGACCTAGGACCTGTATATGGTTTTCAATGGAGGCACTTTGGTGCAA
GGTATACTAACATGCATGCTGACTACTCTGGCCAAGGCTTTGATCAGTTG
CTAGATGTTATTAACAAGATTAAGAATAATCCAAATGATCGGCGGATTGT
ACTCTCGGCTTGGAATCCTTTTGATCTCAAATTGATGGCGCTTCCACCTT
GCCACATGTTTGCTCAGTTCTATGTGGCTAATGGGGAGTTATCATGTCAA
ATGTATCAGCGCTCTGCTGATATGGGCCTGGGTGTGCCGTTTAACATTGC
TTCATATGCCCTCTTGACATGCATGATTGCTCATGTTTGTGATCTTGCTC
CTGGCGATTTCATTCATGTCATTGGTGATGCTCATGTTTATCGCAATCAT
GTCAGGCCTCTGGAGGAACAACTTCAGAAACTGCCAAAGCCTTTTCCAAT
TTTGAAGATCAATCCTGAGAAGAAAGATATAGATTCTTTTGTATCAGAGG
ATTTCAAACTTATAGGTTATGATCCACACCAGAAAATAGAAATGAAAATG
GCGGTATAGATCTCTCTTATAGGTTCAGTAACTCACAGACTCTGGTCCCT
CCTANGCAATAATTGCCAAGTTTTGAGGCACCGCTACTGGAGGCATGTAT
TGACGCCAGAGTTTATACCAATAGCCCATAGAATCTGATTGTNGGGATAA
CTTTTAAATAGTGCATATGTAGTAAGCGGGAATCCTTTANTCCACAGAG
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