CX053763

Overview
NameCX053763
Unique NameCX053763
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX053763 vs. ExPASy Swiss-Prot
Match: PAP8_ARATH (Probable plastid-lipid-associated protein 8, chloroplastic OS=Arabidopsis thaliana GN=PAP8 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.158e-38
Identity = 78/127 (61.42%), Postives = 91/127 (71.65%), Query Frame = -1 
Query:  284 LQKYCVEAPVKCPLIFGEWDVVYCSVPTSPXXXXXXXXXXXXFKTKEMIQAVEAPDTVRNKVSFTALGFFDGEVFLKGKLNALDEKWIQVVFEPPELKVXXXXXXXXXXXGVKLQITYIDEKIRLGL 664
            LQKYCV+ PVK PLIFG+W+VVYCS PTSP            FKTKEMIQA++APD VRNKVS  A GF DG+V L GKL ALD +W+QV+FEPPE+KV            VKL+ITY+DEK+RLGL
Sbjct:  100 LQKYCVKEPVKNPLIFGDWEVVYCSRPTSPGGGYRSVIGRLFFKTKEMIQAIDAPDIVRNKVSINAFGFLDGDVSLTGKLKALDSEWVQVIFEPPEIKVGSLEFKYGFESEVKLRITYVDEKLRLGL 226

HSP 2 Score: 22.7126 bits (47), Expect = 1.158e-38
Identity = 9/11 (81.82%), Postives = 11/11 (100.00%), Query Frame = -3 
Query:  249 SRGSLFVFQRR 281
            S+GSLFVF+RR
Sbjct:  228 SKGSLFVFRRR 238
The following BLAST results are available for this feature:
BLAST of CX053763 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PAP8_ARATH1.158e-3861.42Probable plastid-lipid-associated protein 8, chlor... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS09_8A09_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-8A09-A17-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX053763 ID=CX053763; Name=CX053763; organism=Citrus sinensis; type=EST; length=706bp
TTTTTTTTTTTTTTTTTAAGGGCTTTTCCGCTGCCCCACAAAAATAAGCA
TTAATTCAGGATTGCATGTTTCTATCAAACAACAGTTGAGTTGGGATTAC
AGGGTACAAAAAAAACGGTATGGCGCTGAGGCATCAGTTTCTGCCTAAAT
TTGCTATTCACGGGCATAGCTTGGCATTACAAAAAAACATTCAGGATTTA
CAAAACACAAGCACAAACTTTAACTCTGTCCAGCTATGCTGCTTGGGGGC
GTCTCTGGAAAACAAATAGGGAACCTCTCGATCTAACCCAAGCCTGATCT
TTTCATCTATGTATGTAATCTGCAACTTAACCCCCCTCTGACCGCCATAT
CGGAACCCCAATCCCCCAACTTTCAGTTCAGGGGGTTCAAATACAACTTG
AATCCATTTCTCATCCAAAGCATTAAGCTTTCCTTTCAAAAAAACCTCCC
CGTCAAAAAAACCCAAAGCGGTGAAGGAAACCTTGTTTCTAACAGTGTCA
GGAGCTTCAACAGCCTGAATCATTTCCTTTGTTTTGAAAAAAAAACGGCC
AAATGCCCTTCTGTACCCCCCCCCAGGGGAAGTTGGCACTGAACAGTACA
CCACATCCCATTCTCCAAAAATTAAAGGGCATTTTACTGGGGCTTCAACA
CAATATTTTTGCAACTCTTGAGCAACTTCAGCGACCTCTTTGTGTTCTTC
TTTGGC
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