DR403624

Overview
NameDR403624
Unique NameDR403624
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length784
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DR403624 vs. ExPASy Swiss-Prot
Match: Y1491_ARATH (DUF246 domain-containing protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.415e-28
Identity = 86/260 (33.08%), Postives = 125/260 (48.08%), Query Frame = 2 
Query:   14 LLVAKILNATLVLXHLEVNPVWRDSSSFADIFDVDHFISSLRDEISIVKELPSEY-SWSSREYYATGIRDTRIKTAPVHASANWYLENVLPILQSYGIAAIAPFSHRLAFDNLPTNIQHLRCKVNFQALVFVPHIRKLGETIVHRLRHPPGKLQASGTEFHKGRIGDSEVTGAGKFTVLHLRFDKDMAAHSACDFGGGKAEKLALAKYRQVIWQGR--VLNSQFTG*GVEKSGALPIDSRRDWVTASGFGFHNGTRLYLA 784
            +L A+I+NATLVL  L+ N  W D S F  I+DV+HFI +L+ ++ IV ++P  + +  +++  A  IR  R   AP+     WYL   L  ++ +    + PFSHRLA +      Q LRC+VN+ AL F PHI KL E+IV +LR                          G F  +HLRF+ DM A + C       E+  L KYR+  +  +  + N +         G  P+      +      F N TR+YLA
Sbjct:  111 VLAARIMNATLVLPELDANSFWHDDSGFQGIYDVEHFIETLKYDVKIVGKIPDVHKNGKTKKIKAFQIRPPR--DAPIE----WYLTTALKAMREHSAIYLTPFSHRLAEEIDNPEYQRLRCRVNYHALRFKPHIMKLSESIVDKLR------------------------SQGHFMSIHLRFEMDMLAFAGCFDIFNPEEQKILRKYRKENFADKRLIYNER------RAIGKCPLTPEEVGLILRAMRFDNSTRIYLA 334
The following BLAST results are available for this feature:
BLAST of DR403624 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y1491_ARATH1.415e-2833.08DUF246 domain-containing protein At1g04910 OS=Arab... [more]
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Properties
Property NameValue
Genbank descriptionCSAC-PNP1241L06 Mature Albedo Citrus sinensis cDNA clone CSAC-PNP1241L06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403624 ID=DR403624; Name=DR403624; organism=Citrus sinensis; type=EST; length=784bp
GGGTGCGATGCAGTTGCTCGTTGCCAAAATATTGAATGCAACCTTGGTGC
TNNNGCACCTTGAAGTAAATCCGGTTTGGCGAGATTCTAGCTCCTTCGCA
GATATATTTGATGTAGATCACTTTATTTCTTCCTTGCGTGATGAAATCTC
TATAGTTAAAGAGTTACCTAGTGAATACTCTTGGAGCTCTCGGGAGTACT
ATGCTACTGGTATACGGGATACTAGAATTAAAACAGCACCTGTTCACGCT
TCTGCCAACTGGTACCTGGAAAATGTCTTGCCCATATTACAGAGCTATGG
CATTGCCGCTATCGCTCCATTCTCTCATCGTTTGGCTTTTGACAACTTGC
CGACAAATATTCAGCACCTACGGTGTAAAGTCAACTTTCAAGCTTTAGTT
TTTGTTCCCCATATCAGGAAGTTGGGAGAAACTATTGTTCATCGCCTCCG
TCACCCTCCAGGCAAACTTCAAGCTTCAGGGACTGAGTTCCATAAGGGGA
GGATAGGTGATTCTGAAGTCACTGGAGCTGGAAAATTCACTGTGTTACAT
CTTCGCTTTGATAAAGACATGGCCGCTCATTCAGCCTGTGATTTTGGTGG
CGGTAAAGCCGAAAAATTGGCTCTAGCAAAGTACCGGCAAGTGATTTGGC
AGGGCAGGGTCTTAAACTCTCAGTTCACTGGATGAGGAGTTGAGAAATCA
GGGGCGTTGCCCATTGACTCCAGAAGAGATTGGGTTACTGCTAGCGGCTT
TGGGTTTCACAATGGCACCCGCCTCTATCTTGCT
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